docs/sqc-bam-flow.svg

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@startuml
skinparam SwimlaneTitleFontStyle bold
:**Input Validation**\nValidate the input BAM and reference files;
-> BAM;
split
  :**SAMtools stats**\nExtract BAM statistics;
  kill
split again
  -> //reference fasta//;
  :**Picard CollectWgsMetrics**\nCollect whole genome metrics;
  kill
split again
  :**Qualimap bamqc**\nQuality control for BAM files;
  kill
end split
@enduml

PlantUML version 1.2022.6(Tue Jun 21 17:34:49 GMT 2022)
(GPL source distribution)
Java Runtime: OpenJDK Runtime Environment
JVM: OpenJDK 64-Bit Server VM
Default Encoding: UTF-8
Language: en
Country: US
--></g></svg>