From a9f4283e05da4b8ff989bb39df8411c2b2ad1dd4 Mon Sep 17 00:00:00 2001
From: Yash Patel <86321070+yashpatel6@users.noreply.github.com>
Date: Tue, 12 Mar 2024 17:51:35 -0700
Subject: [PATCH 1/4] Update CHANGELOG.md

---
 CHANGELOG.md | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 9dcca69..edf35f1 100755
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -8,6 +8,10 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 ---
 
 ## [Unreleased]
+
+---
+
+## [6.1.0] - 2024-03-12
 ### Removed
 - Local versions of modularized functions
 ### Added

From 058fc6fd876f31955bc550bf53e010203a6caeee Mon Sep 17 00:00:00 2001
From: Yash Patel <86321070+yashpatel6@users.noreply.github.com>
Date: Tue, 12 Mar 2024 17:52:10 -0700
Subject: [PATCH 2/4] Bump version in nextflow.config

---
 nextflow.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nextflow.config b/nextflow.config
index e77404b..44c753e 100755
--- a/nextflow.config
+++ b/nextflow.config
@@ -5,5 +5,5 @@ manifest {
     name = "call-sSV"
     author = "Yu Pan, Ghouse Mohammed, Mohammed Faizal Eeman Mootor"
     description = "A pipeline to call somatic SVs utilizing Delly and Manta"
-    version = "6.0.0"
+    version = "6.1.0"
     }

From d04405d042e9e1706290db27b7725737701d8cd9 Mon Sep 17 00:00:00 2001
From: Yash Patel <86321070+yashpatel6@users.noreply.github.com>
Date: Tue, 12 Mar 2024 18:00:35 -0700
Subject: [PATCH 3/4] Update version in test

---
 test/configtest-F16.json | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/test/configtest-F16.json b/test/configtest-F16.json
index 468dcb9..9912f29 100644
--- a/test/configtest-F16.json
+++ b/test/configtest-F16.json
@@ -72,7 +72,7 @@
           ]
         }
       },
-      "log_output_dir": "/tmp/outputs/call-sSV-6.0.0/610093/log-call-sSV-6.0.0-19970704T165655Z",
+      "log_output_dir": "/tmp/outputs/call-sSV-6.1.0/610093/log-call-sSV-6.1.0-19970704T165655Z",
       "mad_cutoff": "15",
       "manta_version": "1.6.0",
       "map_qual": "20",
@@ -82,7 +82,7 @@
       "min_cpus": "1",
       "min_memory": "1 MB",
       "output_dir": "/tmp/outputs",
-      "output_dir_base": "/tmp/outputs/call-sSV-6.0.0/610093",
+      "output_dir_base": "/tmp/outputs/call-sSV-6.1.0/610093",
       "pipeval_version": "4.0.0-rc.2",
       "proc_resource_params": {
         "call_sSV_Delly": {
@@ -360,18 +360,18 @@
     },
     "report": {
       "enabled": true,
-      "file": "/tmp/outputs/call-sSV-6.0.0/610093/log-call-sSV-6.0.0-19970704T165655Z/nextflow-log/report.html"
+      "file": "/tmp/outputs/call-sSV-6.1.0/610093/log-call-sSV-6.1.0-19970704T165655Z/nextflow-log/report.html"
     },
     "sample": [
       "610093"
     ],
     "timeline": {
       "enabled": true,
-      "file": "/tmp/outputs/call-sSV-6.0.0/610093/log-call-sSV-6.0.0-19970704T165655Z/nextflow-log/timeline.html"
+      "file": "/tmp/outputs/call-sSV-6.1.0/610093/log-call-sSV-6.1.0-19970704T165655Z/nextflow-log/timeline.html"
     },
     "trace": {
       "enabled": true,
-      "file": "/tmp/outputs/call-sSV-6.0.0/610093/log-call-sSV-6.0.0-19970704T165655Z/nextflow-log/trace.txt"
+      "file": "/tmp/outputs/call-sSV-6.1.0/610093/log-call-sSV-6.1.0-19970704T165655Z/nextflow-log/trace.txt"
     },
     "tz": "sun.util.calendar.ZoneInfo[id=\"UTC\",offset=0,dstSavings=0,useDaylight=false,transitions=0,lastRule=null]",
     "workDir": "/scratch/523557",

From f083b8dec34966aa89b9dc0388c61eb8fdc24133 Mon Sep 17 00:00:00 2001
From: Yash Patel <86321070+yashpatel6@users.noreply.github.com>
Date: Tue, 12 Mar 2024 18:09:39 -0700
Subject: [PATCH 4/4] Update configtest-F16.json with version

---
 test/configtest-F16.json | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/test/configtest-F16.json b/test/configtest-F16.json
index 9912f29..c46f24a 100644
--- a/test/configtest-F16.json
+++ b/test/configtest-F16.json
@@ -41,7 +41,7 @@
       "author": "Yu Pan, Ghouse Mohammed, Mohammed Faizal Eeman Mootor",
       "description": "A pipeline to call somatic SVs utilizing Delly and Manta",
       "name": "call-sSV",
-      "version": "6.0.0"
+      "version": "6.1.0"
     },
     "params": {
       "algorithm": [