diff --git a/pipeline/config/methods.config b/pipeline/config/methods.config
index c7ef8792..2a12475e 100644
--- a/pipeline/config/methods.config
+++ b/pipeline/config/methods.config
@@ -105,7 +105,11 @@ params {
 // Enable docker
 docker {
     enabled = true
-    sudo = params.sge_scheduler // Set to true if run on SGE
-    runOptions = "-u \$(id -u):\$(id -g)"
-    runOptions = "\$(for i in `id --real --groups`; do echo -n \"--group-add=\$i \"; done)"
-}
\ No newline at end of file
+    sudo = (params.sge_scheduler) ? true : false // Set to true if run on SGE
+
+    // Pass user's UID/GID and group IDs to Docker
+    uid_and_gid = "-u \$(id -u):\$(id -g)"
+    all_group_ids = "\$(for i in `id --real --groups`; do echo -n \"--group-add=\$i \"; done)"
+
+    runOptions = "${uid_and_gid} ${all_group_ids}"
+}