diff --git a/config/F16.config b/config/F16.config
deleted file mode 100644
index 1fb00e0..0000000
--- a/config/F16.config
+++ /dev/null
@@ -1,114 +0,0 @@
-process {
-    withName: run_validate_PipeVal {
-        cpus = 1
-        memory = 1.GB
-    }
-    withName: extract_GenomeIntervals {
-        cpus = 1
-        memory = 1.GB
-    }
-    withName: run_SplitIntervals_GATK {
-        cpus = 1
-        memory = 1.GB
-    }
-    withName: run_HaplotypeCallerGVCF_GATK {
-        cpus = 2
-        memory = 4.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_CombineGVCFs_GATK {
-        cpus = 2
-        memory = 4.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_GenotypeGVCFs_GATK {
-        cpus = 2
-        memory = 4.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_MergeVcfs_Picard_VCF {
-        cpus = 1
-        memory = 15.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_MergeVcfs_Picard_GVCF {
-        cpus = 1
-        memory = 15.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_VariantRecalibratorSNP_GATK {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_VariantRecalibratorINDEL_GATK {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_ApplyVQSR_GATK_SNP {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_ApplyVQSR_GATK_INDEL {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: filter_gSNP_GATK {
-        cpus = 1
-        memory = 5.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-}
diff --git a/config/F2.config b/config/F2.config
deleted file mode 100644
index 4cd814f..0000000
--- a/config/F2.config
+++ /dev/null
@@ -1,10 +0,0 @@
-process {
-    withName: extract_GenomeIntervals {
-        cpus = 1
-        memory = 1.GB
-    }
-    withName: run_SplitIntervals_GATK {
-        cpus = 1
-        memory = 1.GB
-    }
-}
diff --git a/config/F32.config b/config/F32.config
deleted file mode 100644
index 1fb00e0..0000000
--- a/config/F32.config
+++ /dev/null
@@ -1,114 +0,0 @@
-process {
-    withName: run_validate_PipeVal {
-        cpus = 1
-        memory = 1.GB
-    }
-    withName: extract_GenomeIntervals {
-        cpus = 1
-        memory = 1.GB
-    }
-    withName: run_SplitIntervals_GATK {
-        cpus = 1
-        memory = 1.GB
-    }
-    withName: run_HaplotypeCallerGVCF_GATK {
-        cpus = 2
-        memory = 4.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_CombineGVCFs_GATK {
-        cpus = 2
-        memory = 4.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_GenotypeGVCFs_GATK {
-        cpus = 2
-        memory = 4.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_MergeVcfs_Picard_VCF {
-        cpus = 1
-        memory = 15.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_MergeVcfs_Picard_GVCF {
-        cpus = 1
-        memory = 15.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_VariantRecalibratorSNP_GATK {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_VariantRecalibratorINDEL_GATK {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_ApplyVQSR_GATK_SNP {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_ApplyVQSR_GATK_INDEL {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: filter_gSNP_GATK {
-        cpus = 1
-        memory = 5.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-}
diff --git a/config/F72.config b/config/F72.config
deleted file mode 100644
index b16f3db..0000000
--- a/config/F72.config
+++ /dev/null
@@ -1,114 +0,0 @@
-process {
-    withName: run_validate_PipeVal {
-        cpus = 1
-        memory = 1.GB
-    }
-    withName: extract_GenomeIntervals {
-        cpus = 1
-        memory = 1.GB
-    }
-    withName: run_SplitIntervals_GATK {
-        cpus = 1
-        memory = 1.GB
-    }
-    withName: run_HaplotypeCallerGVCF_GATK {
-        cpus = 3
-        memory = 7.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_CombineGVCFs_GATK {
-        cpus = 2
-        memory = 4.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_GenotypeGVCFs_GATK {
-        cpus = 2
-        memory = 4.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_MergeVcfs_Picard_VCF {
-        cpus = 1
-        memory = 15.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_MergeVcfs_Picard_GVCF {
-        cpus = 1
-        memory = 15.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_VariantRecalibratorSNP_GATK {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_VariantRecalibratorINDEL_GATK {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_ApplyVQSR_GATK_SNP {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_ApplyVQSR_GATK_INDEL {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: filter_gSNP_GATK {
-        cpus = 1
-        memory = 5.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-}
diff --git a/config/M64.config b/config/M64.config
deleted file mode 100644
index b16f3db..0000000
--- a/config/M64.config
+++ /dev/null
@@ -1,114 +0,0 @@
-process {
-    withName: run_validate_PipeVal {
-        cpus = 1
-        memory = 1.GB
-    }
-    withName: extract_GenomeIntervals {
-        cpus = 1
-        memory = 1.GB
-    }
-    withName: run_SplitIntervals_GATK {
-        cpus = 1
-        memory = 1.GB
-    }
-    withName: run_HaplotypeCallerGVCF_GATK {
-        cpus = 3
-        memory = 7.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_CombineGVCFs_GATK {
-        cpus = 2
-        memory = 4.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_GenotypeGVCFs_GATK {
-        cpus = 2
-        memory = 4.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_MergeVcfs_Picard_VCF {
-        cpus = 1
-        memory = 15.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_MergeVcfs_Picard_GVCF {
-        cpus = 1
-        memory = 15.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_VariantRecalibratorSNP_GATK {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_VariantRecalibratorINDEL_GATK {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_ApplyVQSR_GATK_SNP {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: run_ApplyVQSR_GATK_INDEL {
-        cpus = 10
-        memory = 10.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-    withName: filter_gSNP_GATK {
-        cpus = 1
-        memory = 5.GB
-        retry_strategy {
-            memory {
-                strategy = 'exponential'
-                operand = 2
-            }
-        }
-    }
-}
diff --git a/config/methods.config b/config/methods.config
index 0c44506..f24a048 100644
--- a/config/methods.config
+++ b/config/methods.config
@@ -2,7 +2,8 @@ includeConfig "${projectDir}/external/pipeline-Nextflow-config/config/csv/csv_pa
 includeConfig "${projectDir}/external/pipeline-Nextflow-config/config/bam/bam_parser.config"
 includeConfig "${projectDir}/external/pipeline-Nextflow-config/config/methods/common_methods.config"
 includeConfig "${projectDir}/external/pipeline-Nextflow-config/config/schema/schema.config"
-includeConfig "${projectDir}/external/pipeline-Nextflow-config/config/retry/retry.config"
+// includeConfig "${projectDir}/external/pipeline-Nextflow-config/config/retry/retry.config"
+includeConfig "/hot/code/yashpatel/GitHub/uclahs-cds/pipeline-Nextflow-config/yashpatel-generalized-resource-handler/config/resource_handler/resource_handler.config"
 
 methods {
     set_output_dirs = {
@@ -69,14 +70,12 @@ methods {
         methods.set_env()
         schema.load_custom_types("${projectDir}/config/custom_schema_types.config")
         schema.validate()
-        methods.set_resources_allocation()
-        methods.modify_base_allocations()
+        resource_handler.handle_resources("${projectDir}/config/resources.json")
         methods.set_ids_from_bams()
         methods.set_output_dirs()
         methods.set_pipeline_logs()
         methods.set_process()
         methods.detect_mode()
-        retry.setup_retry()
         methods.setup_docker_cpus()
     }
 }
diff --git a/config/resources.json b/config/resources.json
new file mode 100644
index 0000000..4cf3316
--- /dev/null
+++ b/config/resources.json
@@ -0,0 +1,1118 @@
+{
+    "f2": {
+        "extract_GenomeIntervals": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.5,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.26,
+                "max": "1 GB"
+            }
+        },
+        "run_SplitIntervals_GATK": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.5,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.26,
+                "max": "1 GB"
+            }
+        }
+    },
+    "f16": {
+        "run_validate_PipeVal": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.06,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.03,
+                "max": "1 GB"
+            }
+        },
+        "extract_GenomeIntervals": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.06,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.03,
+                "max": "1 GB"
+            }
+        },
+        "run_SplitIntervals_GATK": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.06,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.03,
+                "max": "1 GB"
+            }
+        },
+        "run_HaplotypeCallerGVCF_GATK": {
+            "cpus": {
+                "min": 2,
+                "fraction": 0.13,
+                "max": 2
+            },
+            "memory": {
+                "min": "4 GB",
+                "fraction": 0.13,
+                "max": "4 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_CombineGVCFs_GATK": {
+            "cpus": {
+                "min": 2,
+                "fraction": 0.13,
+                "max": 2
+            },
+            "memory": {
+                "min": "4 GB",
+                "fraction": 0.13,
+                "max": "4 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_GenotypeGVCFs_GATK": {
+            "cpus": {
+                "min": 2,
+                "fraction": 0.13,
+                "max": 2
+            },
+            "memory": {
+                "min": "4 GB",
+                "fraction": 0.13,
+                "max": "4 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_MergeVcfs_Picard_VCF": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.06,
+                "max": 1
+            },
+            "memory": {
+                "min": "15 GB",
+                "fraction": 0.49,
+                "max": "15 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_MergeVcfs_Picard_GVCF": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.06,
+                "max": 1
+            },
+            "memory": {
+                "min": "15 GB",
+                "fraction": 0.49,
+                "max": "15 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_VariantRecalibratorSNP_GATK": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.63,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.33,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_VariantRecalibratorINDEL_GATK": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.63,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.33,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_ApplyVQSR_GATK_SNP": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.63,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.33,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_ApplyVQSR_GATK_INDEL": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.63,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.33,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "filter_gSNP_GATK": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.06,
+                "max": 1
+            },
+            "memory": {
+                "min": "5 GB",
+                "fraction": 0.16,
+                "max": "5 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        }
+    },
+    "f32": {
+        "run_validate_PipeVal": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.03,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.02,
+                "max": "1 GB"
+            }
+        },
+        "extract_GenomeIntervals": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.03,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.02,
+                "max": "1 GB"
+            }
+        },
+        "run_SplitIntervals_GATK": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.03,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.02,
+                "max": "1 GB"
+            }
+        },
+        "run_HaplotypeCallerGVCF_GATK": {
+            "cpus": {
+                "min": 2,
+                "fraction": 0.06,
+                "max": 2
+            },
+            "memory": {
+                "min": "4 GB",
+                "fraction": 0.07,
+                "max": "4 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_CombineGVCFs_GATK": {
+            "cpus": {
+                "min": 2,
+                "fraction": 0.06,
+                "max": 2
+            },
+            "memory": {
+                "min": "4 GB",
+                "fraction": 0.07,
+                "max": "4 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_GenotypeGVCFs_GATK": {
+            "cpus": {
+                "min": 2,
+                "fraction": 0.06,
+                "max": 2
+            },
+            "memory": {
+                "min": "4 GB",
+                "fraction": 0.07,
+                "max": "4 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_MergeVcfs_Picard_VCF": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.03,
+                "max": 1
+            },
+            "memory": {
+                "min": "15 GB",
+                "fraction": 0.25,
+                "max": "15 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_MergeVcfs_Picard_GVCF": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.03,
+                "max": 1
+            },
+            "memory": {
+                "min": "15 GB",
+                "fraction": 0.25,
+                "max": "15 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_VariantRecalibratorSNP_GATK": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.31,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.16,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_VariantRecalibratorINDEL_GATK": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.31,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.16,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_ApplyVQSR_GATK_SNP": {
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+                "min": 10,
+                "fraction": 0.31,
+                "max": 10
+            },
+            "memory": {
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+                "fraction": 0.16,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_ApplyVQSR_GATK_INDEL": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.31,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.16,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "filter_gSNP_GATK": {
+            "cpus": {
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+                "fraction": 0.03,
+                "max": 1
+            },
+            "memory": {
+                "min": "5 GB",
+                "fraction": 0.08,
+                "max": "5 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        }
+    },
+    "f72": {
+        "run_validate_PipeVal": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.01,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.01,
+                "max": "1 GB"
+            }
+        },
+        "extract_GenomeIntervals": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.01,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.01,
+                "max": "1 GB"
+            }
+        },
+        "run_SplitIntervals_GATK": {
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+                "fraction": 0.01,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.01,
+                "max": "1 GB"
+            }
+        },
+        "run_HaplotypeCallerGVCF_GATK": {
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+                "min": 3,
+                "fraction": 0.04,
+                "max": 3
+            },
+            "memory": {
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+                "fraction": 0.05,
+                "max": "7 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_CombineGVCFs_GATK": {
+            "cpus": {
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+                "fraction": 0.03,
+                "max": 2
+            },
+            "memory": {
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+                "fraction": 0.03,
+                "max": "4 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_GenotypeGVCFs_GATK": {
+            "cpus": {
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+                "fraction": 0.03,
+                "max": 2
+            },
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+                "fraction": 0.03,
+                "max": "4 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_MergeVcfs_Picard_VCF": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.01,
+                "max": 1
+            },
+            "memory": {
+                "min": "15 GB",
+                "fraction": 0.11,
+                "max": "15 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_MergeVcfs_Picard_GVCF": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.01,
+                "max": 1
+            },
+            "memory": {
+                "min": "15 GB",
+                "fraction": 0.11,
+                "max": "15 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_VariantRecalibratorSNP_GATK": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.14,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.07,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_VariantRecalibratorINDEL_GATK": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.14,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.07,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_ApplyVQSR_GATK_SNP": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.14,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.07,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_ApplyVQSR_GATK_INDEL": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.14,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.07,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "filter_gSNP_GATK": {
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+                "fraction": 0.01,
+                "max": 1
+            },
+            "memory": {
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+                "fraction": 0.04,
+                "max": "5 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        }
+    },
+    "m64": {
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+                "fraction": 0.02,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.00,
+                "max": "1 GB"
+            }
+        },
+        "extract_GenomeIntervals": {
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+                "fraction": 0.02,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.00,
+                "max": "1 GB"
+            }
+        },
+        "run_SplitIntervals_GATK": {
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+                "fraction": 0.02,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.00,
+                "max": "1 GB"
+            }
+        },
+        "run_HaplotypeCallerGVCF_GATK": {
+            "cpus": {
+                "min": 3,
+                "fraction": 0.05,
+                "max": 3
+            },
+            "memory": {
+                "min": "7 GB",
+                "fraction": 0.01,
+                "max": "7 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_CombineGVCFs_GATK": {
+            "cpus": {
+                "min": 2,
+                "fraction": 0.03,
+                "max": 2
+            },
+            "memory": {
+                "min": "4 GB",
+                "fraction": 0.00,
+                "max": "4 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_GenotypeGVCFs_GATK": {
+            "cpus": {
+                "min": 2,
+                "fraction": 0.03,
+                "max": 2
+            },
+            "memory": {
+                "min": "4 GB",
+                "fraction": 0.00,
+                "max": "4 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_MergeVcfs_Picard_VCF": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.02,
+                "max": 1
+            },
+            "memory": {
+                "min": "15 GB",
+                "fraction": 0.02,
+                "max": "15 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_MergeVcfs_Picard_GVCF": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.02,
+                "max": 1
+            },
+            "memory": {
+                "min": "15 GB",
+                "fraction": 0.02,
+                "max": "15 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_VariantRecalibratorSNP_GATK": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.16,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.01,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_VariantRecalibratorINDEL_GATK": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.16,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.01,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_ApplyVQSR_GATK_SNP": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.16,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.01,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_ApplyVQSR_GATK_INDEL": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.16,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.01,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "filter_gSNP_GATK": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.02,
+                "max": 1
+            },
+            "memory": {
+                "min": "5 GB",
+                "fraction": 0.01,
+                "max": "5 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        }
+    },
+    "default": {
+        "run_validate_PipeVal": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.01,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.01,
+                "max": "1 GB"
+            }
+        },
+        "extract_GenomeIntervals": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.01,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.01,
+                "max": "1 GB"
+            }
+        },
+        "run_SplitIntervals_GATK": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.01,
+                "max": 1
+            },
+            "memory": {
+                "min": "1 GB",
+                "fraction": 0.01,
+                "max": "1 GB"
+            }
+        },
+        "run_HaplotypeCallerGVCF_GATK": {
+            "cpus": {
+                "min": 3,
+                "fraction": 0.04,
+                "max": 3
+            },
+            "memory": {
+                "min": "7 GB",
+                "fraction": 0.05,
+                "max": "7 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_CombineGVCFs_GATK": {
+            "cpus": {
+                "min": 2,
+                "fraction": 0.03,
+                "max": 2
+            },
+            "memory": {
+                "min": "4 GB",
+                "fraction": 0.03,
+                "max": "4 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_GenotypeGVCFs_GATK": {
+            "cpus": {
+                "min": 2,
+                "fraction": 0.03,
+                "max": 2
+            },
+            "memory": {
+                "min": "4 GB",
+                "fraction": 0.03,
+                "max": "4 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_MergeVcfs_Picard_VCF": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.01,
+                "max": 1
+            },
+            "memory": {
+                "min": "15 GB",
+                "fraction": 0.11,
+                "max": "15 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_MergeVcfs_Picard_GVCF": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.01,
+                "max": 1
+            },
+            "memory": {
+                "min": "15 GB",
+                "fraction": 0.11,
+                "max": "15 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_VariantRecalibratorSNP_GATK": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.14,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.07,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_VariantRecalibratorINDEL_GATK": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.14,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.07,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_ApplyVQSR_GATK_SNP": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.14,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.07,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "run_ApplyVQSR_GATK_INDEL": {
+            "cpus": {
+                "min": 10,
+                "fraction": 0.14,
+                "max": 10
+            },
+            "memory": {
+                "min": "10 GB",
+                "fraction": 0.07,
+                "max": "10 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        },
+        "filter_gSNP_GATK": {
+            "cpus": {
+                "min": 1,
+                "fraction": 0.01,
+                "max": 1
+            },
+            "memory": {
+                "min": "5 GB",
+                "fraction": 0.04,
+                "max": "5 GB"
+            },
+            "retry_strategy": {
+                "memory": {
+                    "strategy": "exponential",
+                    "operand": 2
+                }
+            }
+        }
+    }
+}
\ No newline at end of file
diff --git a/external/pipeline-Nextflow-config b/external/pipeline-Nextflow-config
index be1eaf5..8b500b7 160000
--- a/external/pipeline-Nextflow-config
+++ b/external/pipeline-Nextflow-config
@@ -1 +1 @@
-Subproject commit be1eaf5e2831fb4d4c4e9bcef2a4b9618dfae8cd
+Subproject commit 8b500b7d2f733689842d9f5c74d3616935ab2be1