nftest.yml

---
global:
  temp_dir: ./test/work
  nf_config: test/global.config
  remove_temp: false
  clean_logs: true

cases:
  - name: test-integration-entrypoint-parser
    message: Integration test with entypoint of parser
    nf_script: main.nf
    nf_config: test/test-integration-entrypoint-parser/test.config
    skip: false
    verbose: true

  - name: test-integration-entrypoint-parser-multiple-vep
    message: Integration test with entypoint of parser
    nf_script: main.nf
    nf_config: test/test-integration-entrypoint-parser-multiple-vep/test.config
    skip: false
    verbose: true

  - name: test-integration-entrypoint-gvf
    message: Integration test with entypoint of gvf
    nf_script: main.nf
    nf_config: test/test-integration-entrypoint-gvf/test.config
    skip: false
    verbose: true

  - name: test-integration-no-split
    message: Integration test with splitFasta off
    nf_script: main.nf
    nf_config: test/test-integration-no-split/test.config
    skip: false
    verbose: true

  - name: test-integration-no-encode
    message: Integration test with encodeFasta off
    nf_script: main.nf
    nf_config: test/test-integration-no-encode/test.config
    skip: false
    verbose: true

  - name: test-integration-entrypoint-fasta
    message: Integration test with entrypoint of variant fasta
    nf_script: main.nf
    nf_config: test/test-integration-entrypoint-fasta/test.config
    skip: false
    verbose: true

  - name: test-integration-merge
    message: Integration test with variant and noncoding peptides merged
    nf_script: main.nf
    nf_config: test/test-integration-merge/test.config
    skip: false
    verbose: true

  - name: test-integration-no-filter
    message: Integration test with no filter
    nf_script: main.nf
    nf_config: test/test-integration-no-filter/test.config
    skip: false
    verbose: true