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nftest.yml
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---
global:
temp_dir: test/work
remove_temp: true
clean_logs: true
nf_config: test/nftest.config
cases:
- name: TWGSAMIN000001-T002-S02-F
nf_script: ./main.nf
params_file: ./test/single.yaml
skip: false
verbose: true
asserts:
- actual: calculate-targeted-coverage-*/TWGSAMIN000001-T002-S02-F/SAMtools-*/output/BEDtools-*_TWGSAMIN000001_TWGSAMIN000001-T002-S02-F_collapsed-coverage.bed
expect: /hot/software/pipeline/pipeline-calculate-targeted-coverage/Nextflow/development/output/TWGSAMIN000001-T002-S02-F.collapsed_coverage.bed
method: md5
- actual: calculate-targeted-coverage-*/TWGSAMIN000001-T002-S02-F/SAMtools-*/output/BEDtools-*_TWGSAMIN000001_TWGSAMIN000001-T002-S02-F_off-target-dbSNP-depth-per-base.bed
expect: /hot/software/pipeline/pipeline-calculate-targeted-coverage/Nextflow/development/output/TWGSAMIN000001-T002-S02-F.off-target-dbSNP_depth-per-base.bed
method: md5
- actual: calculate-targeted-coverage-*/TWGSAMIN000001-T002-S02-F/SAMtools-*/output/BEDtools-*_TWGSAMIN000001_TWGSAMIN000001-T002-S02-F_target-with-enriched-off-target-intervals.bed.gz
expect: /hot/software/pipeline/pipeline-calculate-targeted-coverage/Nextflow/development/output/TWGSAMIN000001-T002-S02-F.target_with_enriched_off-target_intervals.bed.gz
method: md5
- actual: calculate-targeted-coverage-*/TWGSAMIN000001-T002-S02-F/SAMtools-*/output/BEDtools-*_TWGSAMIN000001_TWGSAMIN000001-T002-S02-F_target-with-enriched-off-target-intervals.bed.gz.tbi
expect: /hot/software/pipeline/pipeline-calculate-targeted-coverage/Nextflow/development/output/TWGSAMIN000001-T002-S02-F.target_with_enriched_off-target_intervals.bed.gz.tbi
method: md5