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- Predict Stability SNV SV Liftover Annotation bcftools annotate Stability predict-liftover-stability.R rf_model Note: Annotation is performed before Liftover when lifting backward funcotator_sources repeat_bed bcftools annotate Trinucleotide bcftools annotate RepeatMasker gatk Funcotator chain_file bcftools +liftover chain_file gnomad_rds liftover-Delly2-vcf.R Legend Nodes Input File Parameterized Input Output file Processes GATK bcftools Rscript Generic Linux Input VCF pipeval Variant Type? Output VCFs
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+ Predict Stability SNV SV Liftover Annotation bcftools annotate Stability predict-variant-stability.R rf_model Note: Annotation is performed prior to LiftOver when converting from GRCh38 -> GRCh37 funcotator_sources repeat_bed bcftools annotate Trinucleotide bcftools annotate RepeatMasker gatk Funcotator chain_file bcftools +liftover chain_file gnomad_rds liftover-Delly2-vcf.R Legend Nodes Input File Parameterized Input Output file Processes GATK bcftools Rscript Generic Linux Input VCF pipeval Variant Type? Output VCFs
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