From 5f351ca9297b64ffead1ab0f3285ac3a67fa3901 Mon Sep 17 00:00:00 2001
From: Nicholas Wiltsie <nwiltsie@mednet.ucla.edu>
Date: Tue, 16 Jul 2024 14:33:47 -0700
Subject: [PATCH] Move 'save_intermediate_files' into default.config

---
 config/default.config  | 2 ++
 config/template.config | 1 -
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/config/default.config b/config/default.config
index 4848a43..0ee67bd 100644
--- a/config/default.config
+++ b/config/default.config
@@ -8,6 +8,8 @@ params {
     min_cpus = 1
     min_memory = 1.MB
 
+    save_intermediate_files = false
+
     dataset_id = ''
     blcds_registered_dataset = false
 
diff --git a/config/template.config b/config/template.config
index 121e4ee..9fd15cf 100644
--- a/config/template.config
+++ b/config/template.config
@@ -13,7 +13,6 @@ params {
 
     // Choices: ["Mutect2", "HaplotypeCaller"]
     variant_caller = "Mutect2"
-    save_intermediate_files = false
 
     rf_model = ""