diff --git a/qa-vpodc.planx-pla.net/etlMapping.yaml b/qa-vpodc.planx-pla.net/etlMapping.yaml index 96e0a6e5a..0d255e78d 100644 --- a/qa-vpodc.planx-pla.net/etlMapping.yaml +++ b/qa-vpodc.planx-pla.net/etlMapping.yaml @@ -1,38 +1,24 @@ mappings: - - name: vpodc_subject - doc_type: subject + - name: vpodc_case + doc_type: case type: aggregator - root: subject + root: case props: - name: project_id - name: submitter_id - - name: amputation_type - - name: geographic_site - - name: cohort_id - - name: eligibility - - name: index_date - - name: transplanted_organ - - name: consent_codes - - name: unit_geographic_site - - name: derived_parent_subject_id - - name: derived_topmed_subject_id - - name: participant_id - name: vpodc_data_file - doc_type: data_file + doc_type: imaging_file type: collector root: None category: data_file props: + - name: submitter_id - name: file_name - name: file_size - - name: file_format - name: md5sum - - name: object_id - - name: file_state - - name: error_type - - name: ga4gh_drs_uri - - name: bucket_path - - name: callset + - name: data_format + - name: data_type + - name: data_category injecting_props: subject: props: diff --git a/qa-vpodc.planx-pla.net/manifest.json b/qa-vpodc.planx-pla.net/manifest.json index 4c1f2e825..9f1580edb 100644 --- a/qa-vpodc.planx-pla.net/manifest.json +++ b/qa-vpodc.planx-pla.net/manifest.json @@ -40,7 +40,7 @@ "environment": "qa-vpodc", "hostname": "qa-vpodc.planx-pla.net", "revproxy_arn": "arn:aws:acm:us-east-1:851725307933:certificate/94dc6b22-6ad2-481f-aff5-59ad7381e9c6", - "dictionary_url": "https://s3.amazonaws.com/dictionary-artifacts/gtexdictionary/4.0.6/schema.json", + "dictionary_url": "https://s3.amazonaws.com/dictionary-artifacts/vadictionary/0.5.4/schema.json", "dispatcher_job_num": "10", "portal_app": "gitops", "sync_from_dbgap": "False", @@ -61,8 +61,8 @@ "guppy": { "indices": [ { - "index": "vpodc_subject", - "type": "subject" + "index": "vpodc_case", + "type": "case" }, { "index": "vpodc_data_file",