Merge pull request #3275 from uc-cdis/MaribelleHGomez-patch-1

Update manifest.json

Author: m0nhawk

qa-vpodc.planx-pla.net/etlMapping.yaml

@@ -1,38 +1,24 @@
 mappings:
-  - name: vpodc_subject
-    doc_type: subject
+  - name: vpodc_case
+    doc_type: case
     type: aggregator
-    root: subject
+    root: case
     props:
       - name: project_id
       - name: submitter_id
-      - name: amputation_type
-      - name: geographic_site
-      - name: cohort_id
-      - name: eligibility
-      - name: index_date
-      - name: transplanted_organ
-      - name: consent_codes
-      - name: unit_geographic_site
-      - name: derived_parent_subject_id
-      - name: derived_topmed_subject_id
-      - name: participant_id
   - name: vpodc_data_file
-    doc_type: data_file
+    doc_type: imaging_file
     type: collector
     root: None
     category: data_file
     props:
+      - name: submitter_id
       - name: file_name
       - name: file_size
-      - name: file_format
       - name: md5sum
-      - name: object_id
-      - name: file_state
-      - name: error_type
-      - name: ga4gh_drs_uri
-      - name: bucket_path
-      - name: callset
+      - name: data_format
+      - name: data_type
+      - name: data_category
     injecting_props:
       subject:
         props:

qa-vpodc.planx-pla.net/manifest.json

@@ -40,7 +40,7 @@
         "environment": "qa-vpodc",
         "hostname": "qa-vpodc.planx-pla.net",
         "revproxy_arn": "arn:aws:acm:us-east-1:851725307933:certificate/94dc6b22-6ad2-481f-aff5-59ad7381e9c6",
-        "dictionary_url": "https://s3.amazonaws.com/dictionary-artifacts/gtexdictionary/4.0.6/schema.json",
+        "dictionary_url": "https://s3.amazonaws.com/dictionary-artifacts/vadictionary/0.5.4/schema.json",
         "dispatcher_job_num": "10",
         "portal_app": "gitops",
         "sync_from_dbgap": "False",
@@ -61,8 +61,8 @@
     "guppy": {
         "indices": [
             {
-                "index": "vpodc_subject",
-                "type": "subject"
+                "index": "vpodc_case",
+                "type": "case"
             },
             {
                 "index": "vpodc_data_file",