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BUG: get_dbgap_accession_as_parts does not correctly parse a full dbgap accession #222

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SpencerAxelrod opened this issue Jun 6, 2024 · 0 comments

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SpencerAxelrod commented Jun 6, 2024

gen3.external.nih.utils.get_dbgap_accession_as_parts does not seem to parse a full dbgap accession.

Example:

get_dbgap_accession_as_parts("phs001961.v2.p1.c1")

returns

{
'phsid': 'phs001961', 
'phsid_number': '001961', 
'participant_set': '', 
'participant_set_number': '',
'version': 'v2', 
'version_number': '2', 
'consent': '', 
'consent_number': ''
}

with participant set and consent group information missing

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