-
Notifications
You must be signed in to change notification settings - Fork 56
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
covid19_sir.ipynb errors on first cell #14
Comments
@sam-qordoba Yes, sunode is a very alpha package and the NB is not really meant for public consumption yet. Do you just want to check it out or are you familiar with ODEs and want to extend the model? |
I have a background in math and physics, so I am not new to ODEs, however, it's been a while since I have focused on them. The motivation is: I work on chime, and we are working on improving the underlying model. |
What error are you getting? You need to install sunode master as well as sundials (conda-forge). |
|
ok, @twiecki here is what I have. If I start the docker container rm -rf /usr/local
apt-get install wget
wget -c https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
bash ./Miniconda3-latest-Linux-x86_64.sh -b -p /usr/local
conda install -y -c chogan -c conda-forge conda-build conda-verify sundials
git clone https://github.com/aseyboldt/sunode
cd sunode
conda-build --no-test --dirty --no-verify -c conda-forge ./conda
cd ..
conda install --use-local sunode gives a lot of output, ending with
which, I get that I can use a different docker container... it just feels like a lot? does this seem like the right track? |
Yeah, I think this might be a bit too rough of a ride in its current state, sorry. |
I haven't seen the dependency
sunode
before. It is not pip installable. I tried pip installing by pointing to the GitHub repo, and by cloning it:But they both error out. Could you explain how to install sunode? Thank you.
The text was updated successfully, but these errors were encountered: