From 88c15b5933e4c740799870dfec5af45c3cc91b15 Mon Sep 17 00:00:00 2001 From: Jerome Kelleher Date: Fri, 3 Nov 2023 11:50:40 +0000 Subject: [PATCH 1/2] Tweak --- paper.tex | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/paper.tex b/paper.tex index 99caf76..8948453 100644 --- a/paper.tex +++ b/paper.tex @@ -335,8 +335,8 @@ \section{Genome ARGs} How nodes are interpreted, exactly, is application dependent. Following \citet{hudson1983properties}, we can view nodes -as representing gametes, or we can imagine them representing -the genomes present in cells immediately before or after +as representing gametes, or we can imagine them representing, +for example, the genomes present in cells immediately before or after some instantaneous event (Appendix~\ref{sec-cell-lineages-and-args}). A node can represent any genome along a chain of cell divisions or can be interpreted as representing one of the genomes of a From 05da470dc46b3ac308ffe5bc90005ba84c4e5a2f Mon Sep 17 00:00:00 2001 From: Jerome Kelleher Date: Fri, 3 Nov 2023 11:58:43 +0000 Subject: [PATCH 2/2] Typo --- paper.tex | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/paper.tex b/paper.tex index 8948453..d5002c4 100644 --- a/paper.tex +++ b/paper.tex @@ -2476,7 +2476,7 @@ \section{Cell lineages and ARGs} % minimally simplified gARG. The schematic illustrates an important point about the biological reality of polytomies. -Three linages coalesce in the left-hand genome of individual $D_{10}$, but do +Three lineages coalesce in the left-hand genome of individual $D_{10}$, but do so as the result of two successive bifurcations. This is \emph{necessarily} so, because the only known method of reproducing DNA is by (semi-conservative) duplication. Whether this polytomy is resolvable depends on the available mutational data.