diff --git a/CHANGELOG.rst b/CHANGELOG.rst index 7465a48b..225b210c 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -2,15 +2,20 @@ [UPCOMING.X.X] - XXXX-XX-XX *************************** +******************** +[0.700] - 2021-02-24 +******************** + **Breaking changes**: - `pyslim.recapitate` is updated to use new demography features in msprime 1.0, - and differs from `SlimTreeSequence.recapitate()` (now deprecated). The - argument `Ne` is removed; use `ancestral_Ne`. + and differs from `SlimTreeSequence.recapitate()` (now deprecated). Since + the backend is now `msprime.sim_ancestry()` instead of `msprime.simulate()`, + the argument `Ne` should be replaced with `ancestral_Ne`. -- `reference_sequence` is now a tskit attribute, no longer managed by pyslim. - It is no longer mutable on tree sequences (only TableCollections), and - previous calls to `ts.reference_sequence` to get the actual sequence +- `reference_sequence` is now a tskit TreeSequence attribute, no longer managed + by pyslim. It is no longer mutable on tree sequences (only TableCollections), + and previous calls to `ts.reference_sequence` to get the actual sequence should be replaced by `ts.reference_sequence.data`. - Old-style "legacy" metadata (previously deprecated) has been removed. diff --git a/pyslim/_version.py b/pyslim/_version.py index fe0c55fb..b90a80c4 100644 --- a/pyslim/_version.py +++ b/pyslim/_version.py @@ -1,5 +1,5 @@ # coding: utf-8 -pyslim_version = '0.600' +pyslim_version = '0.700' slim_file_version = '0.7' # other file versions that require no modification compatible_slim_file_versions = ['0.7']