Merge pull request #360 from trellis-ldp/trellis-359

Remove support for Digest/Want-Digest

components/app/src/main/java/org/trellisldp/app/config/CORSConfiguration.java

@@ -32,11 +32,11 @@ public class CORSConfiguration {
             "GET", "HEAD", "OPTIONS", "POST");
 
     private List<String> allowHeaders = asList("Content-Type", "Link", "Accept",
-            "Accept-Datetime", "Prefer", "Want-Digest", "Slug", "Digest", "Origin");
+            "Accept-Datetime", "Prefer", "Slug", "Origin");
 
     private List<String> exposeHeaders = asList("Content-Type", "Link",
             "Memento-Datetime", "Preference-Applied", "Location",
-            "Accept-Patch", "Accept-Post", "Digest", "Accept-Ranges", "ETag", "Vary");
+            "Accept-Patch", "Accept-Post", "Accept-Ranges", "ETag", "Vary");
 
     private boolean allowCredentials = true;
 

components/app/src/test/java/org/trellisldp/app/config/TrellisConfigurationTest.java

@@ -143,7 +143,7 @@ public void testConfigurationCORS1() throws Exception {
 
         assertTrue(config.getCors().getEnabled(), "CORS not enabled!");
         assertTrue(config.getCors().getAllowOrigin().contains("*"), "'*' not in CORS allow-origin!");
-        assertTrue(config.getCors().getAllowHeaders().contains("Want-Digest"), "want-digest not in CORS allow-headers");
+        assertTrue(config.getCors().getAllowHeaders().contains("Link"), "Link not in CORS allow-headers");
         assertTrue(config.getCors().getAllowMethods().contains("PUT"), "PUT not in CORS allow-methods!");
         assertTrue(config.getCors().getExposeHeaders().contains("Memento-Datetime"),
                 "memento-datetime missing from CORS expose-headers!");

components/app/src/test/resources/config1.yml

@@ -77,7 +77,6 @@ cors:
         - "PATCH"
     allowHeaders:
         - "Content-Type"
-        - "Want-Digest"
         - "Link"
     exposeHeaders:
         - "Link"

components/file/build.gradle

@@ -12,7 +12,6 @@ dependencies {
     api("org.glassfish.hk2.external:javax.inject:$javaxInjectVersion")
     api project(':trellis-api')
 
-    implementation("commons-codec:commons-codec:$commonsCodecVersion")
     implementation("commons-io:commons-io:$commonsIoVersion")
     implementation("org.apache.commons:commons-rdf-jena:$commonsRdfVersion") {
         exclude group: 'org.apache.jena', module: 'jena-osgi'

components/file/src/main/java/module-info.java

@@ -17,7 +17,6 @@
     requires transitive org.trellisldp.api;
     requires transitive org.trellisldp.vocabulary;
 
-    requires org.apache.commons.codec;
     requires org.apache.commons.io;
     requires org.apache.commons.rdf.api;
     requires org.apache.commons.rdf.jena;

components/file/src/main/java/org/trellisldp/file/FileBinaryService.java

@@ -16,34 +16,19 @@
 import static java.nio.file.Files.copy;
 import static java.nio.file.Files.delete;
 import static java.nio.file.StandardCopyOption.REPLACE_EXISTING;
-import static java.util.Arrays.asList;
 import static java.util.Objects.requireNonNull;
 import static java.util.Optional.of;
 import static java.util.ServiceLoader.load;
 import static java.util.concurrent.CompletableFuture.supplyAsync;
-import static java.util.stream.Collectors.toSet;
-import static org.apache.commons.codec.digest.DigestUtils.updateDigest;
-import static org.apache.commons.codec.digest.MessageDigestAlgorithms.MD2;
-import static org.apache.commons.codec.digest.MessageDigestAlgorithms.MD5;
-import static org.apache.commons.codec.digest.MessageDigestAlgorithms.SHA3_256;
-import static org.apache.commons.codec.digest.MessageDigestAlgorithms.SHA3_384;
-import static org.apache.commons.codec.digest.MessageDigestAlgorithms.SHA3_512;
-import static org.apache.commons.codec.digest.MessageDigestAlgorithms.SHA_1;
-import static org.apache.commons.codec.digest.MessageDigestAlgorithms.SHA_256;
-import static org.apache.commons.codec.digest.MessageDigestAlgorithms.SHA_384;
-import static org.apache.commons.codec.digest.MessageDigestAlgorithms.SHA_512;
 import static org.slf4j.LoggerFactory.getLogger;
 
 import java.io.File;
-import java.io.FileInputStream;
 import java.io.IOException;
 import java.io.InputStream;
 import java.io.UncheckedIOException;
 import java.net.URI;
-import java.security.MessageDigest;
 import java.util.Iterator;
 import java.util.ServiceLoader;
-import java.util.Set;
 import java.util.concurrent.CompletionStage;
 import java.util.function.Supplier;
 
@@ -61,24 +46,6 @@
 
 /**
  * A {@link BinaryService} implementation that stores LDP-NR resources as files on a local filesystem.
- *
- * <p>This service supports the following digest algorithms:
- * <ul>
- * <li>MD5</li>
- * <li>MD2</li>
- * <li>SHA</li>
- * <li>SHA-1</li>
- * <li>SHA-256</li>
- * <li>SHA-384</li>
- * <li>SHA-512</li>
- * </ul>
- *
- * <p>When running under JDK 9+, the following additional digest algorithms are supported:
- * <ul>
- * <li>SHA3-256</li>
- * <li>SHA3-384</li>
- * <li>SHA3-512</li>
- * </ul>
  */
 public class FileBinaryService implements BinaryService {
 
@@ -92,14 +59,9 @@ public class FileBinaryService implements BinaryService {
     public static final String CONFIG_FILE_BINARY_LENGTH = "trellis.file.binary.length";
 
     private static final Logger LOGGER = getLogger(FileBinaryService.class);
-    private static final String SHA = "SHA";
     private static final int DEFAULT_HIERARCHY = 3;
     private static final int DEFAULT_LENGTH = 2;
 
-    private static final Set<String> algorithms = asList(MD5, MD2, SHA, SHA_1, SHA_256, SHA_384, SHA_512,
-            SHA3_256, SHA3_384, SHA3_512).stream()
-        .collect(toSet());
-
     private final String basePath;
     private final Supplier<String> idSupplier;
 
@@ -176,16 +138,6 @@ public CompletionStage<Void> setContent(final BinaryMetadata metadata, final Inp
         });
     }
 
-    @Override
-    public CompletionStage<MessageDigest> calculateDigest(final IRI identifier, final MessageDigest algorithm) {
-        return supplyAsync(() -> computeDigest(identifier, algorithm));
-    }
-
-    @Override
-    public Set<String> supportedAlgorithms() {
-        return algorithms;
-    }
-
     @Override
     public String generateIdentifier() {
         return idSupplier.get();
@@ -198,14 +150,6 @@ private File getFileFromIdentifier(final IRI identifier) {
             .orElseThrow(() -> new IllegalArgumentException("Could not create File object from IRI: " + identifier));
     }
 
-    private MessageDigest computeDigest(final IRI identifier, final MessageDigest algorithm) {
-        try (final InputStream input = new FileInputStream(getFileFromIdentifier(identifier))) {
-            return updateDigest(algorithm, input);
-        } catch (final IOException ex) {
-            throw new UncheckedIOException("Error computing digest", ex);
-        }
-    }
-
     private static String trimStart(final String str, final String trim) {
         if (str.startsWith(trim)) {
             return trimStart(str.substring(trim.length()), trim);

components/file/src/test/java/org/trellisldp/file/FileBinaryServiceTest.java

@@ -14,18 +14,14 @@
 package org.trellisldp.file;
 
 import static java.nio.charset.StandardCharsets.UTF_8;
-import static java.util.Base64.getEncoder;
-import static org.apache.commons.codec.digest.DigestUtils.getDigest;
 import static org.junit.jupiter.api.Assertions.*;
-import static org.junit.jupiter.api.condition.JRE.JAVA_8;
 import static org.mockito.Mockito.mock;
 
 import java.io.ByteArrayInputStream;
 import java.io.File;
 import java.io.IOException;
 import java.io.InputStream;
 import java.math.BigInteger;
-import java.security.MessageDigest;
 import java.security.SecureRandom;
 import java.util.concurrent.CompletionException;
 
@@ -36,7 +32,6 @@
 import org.junit.jupiter.api.AfterAll;
 import org.junit.jupiter.api.BeforeAll;
 import org.junit.jupiter.api.Test;
-import org.junit.jupiter.api.condition.DisabledOnJre;
 import org.trellisldp.api.Binary;
 import org.trellisldp.api.BinaryMetadata;
 import org.trellisldp.api.BinaryService;
@@ -65,15 +60,6 @@ public static void cleanUp() {
         System.clearProperty(FileBinaryService.CONFIG_FILE_BINARY_BASE_PATH);
     }
 
-    @Test
-    public void testSupportedAlgorithms() {
-        final BinaryService service = new FileBinaryService();
-        assertTrue(service.supportedAlgorithms().contains("SHA"));
-        assertTrue(service.supportedAlgorithms().contains("SHA-1"));
-        assertTrue(service.supportedAlgorithms().contains("SHA-256"));
-        assertTrue(service.supportedAlgorithms().contains("MD5"));
-    }
-
     @Test
     public void testFilePurge() {
         final BinaryService service = new FileBinaryService();
@@ -171,38 +157,6 @@ public void testGetFileSkipContentError() throws Exception {
             }).toCompletableFuture().join());
     }
 
-    @Test
-    public void testBase64Digest() throws IOException {
-        final BinaryService service = new FileBinaryService();
-        assertEquals("oZ1Y1O/8vs39RH31fh9lrA==", service.calculateDigest(file, getDigest("MD5"))
-                        .thenApply(MessageDigest::digest).thenApply(getEncoder()::encodeToString)
-                        .toCompletableFuture().join(), "Bad MD5 digest!");
-        assertEquals("QJuYLse9SK/As177lt+rSfixyH0=", service.calculateDigest(file, getDigest("SHA-1"))
-                        .thenApply(MessageDigest::digest).thenApply(getEncoder()::encodeToString)
-                        .toCompletableFuture().join(), "Bad SHA digest!");
-        assertThrows(CompletionException.class, () ->
-                service.calculateDigest(rdf.createIRI("file:///" + randomFilename()), getDigest("MD5"))
-                .toCompletableFuture().join(), "Computing digest on invalid file should throw an exception!");
-    }
-
-    @Test
-    @DisabledOnJre(JAVA_8)
-    public void testJdk9Digests() throws IOException {
-        final BinaryService service = new FileBinaryService();
-        assertEquals("FQgyH2yU2NhyMTZ7YDDKwV5vcWUBM1zq0uoIYUiHH+4=",
-                        service.calculateDigest(file, getDigest("SHA3-256")).thenApply(MessageDigest::digest)
-                                        .thenApply(getEncoder()::encodeToString).toCompletableFuture().join(),
-                        "Bad SHA3-256 digest!");
-        assertEquals("746UDLrFXM61gzI0FnoVT2S0Z7EmQUfhHnoSYwkR2MHzbBe6j9rMigQBfR8ApZUA",
-                        service.calculateDigest(file, getDigest("SHA3-384")).thenApply(MessageDigest::digest)
-                                        .thenApply(getEncoder()::encodeToString).toCompletableFuture().join(),
-                        "Bad SHA3-384 digest!");
-        assertEquals("Ecu/R0kV4eL0J/VOpyVA2Lz0T6qsJj9ioQ+QorJDztJeMj6uhf6zqyhZnu9zMYiwrkX8U4oWiZMDT/0fWjOyYg==",
-                        service.calculateDigest(file, getDigest("SHA3-512")).thenApply(MessageDigest::digest)
-                                        .thenApply(getEncoder()::encodeToString).toCompletableFuture().join(),
-                        "Bad SHA3-512 digest!");
-    }
-
     @Test
     public void testBadIdentifier() {
         final BinaryService service = new FileBinaryService();

components/test/src/main/java/org/trellisldp/test/LdpBinaryTests.java

@@ -23,9 +23,7 @@
 import static org.junit.jupiter.api.Assertions.*;
 import static org.junit.jupiter.api.TestInstance.Lifecycle.PER_CLASS;
 import static org.trellisldp.api.TrellisUtils.getInstance;
-import static org.trellisldp.http.core.HttpConstants.DIGEST;
 import static org.trellisldp.http.core.HttpConstants.SLUG;
-import static org.trellisldp.http.core.HttpConstants.WANT_DIGEST;
 import static org.trellisldp.http.core.RdfMediaType.APPLICATION_SPARQL_UPDATE;
 import static org.trellisldp.http.core.RdfMediaType.TEXT_TURTLE_TYPE;
 import static org.trellisldp.test.TestUtils.readEntityAsGraph;
@@ -127,23 +125,6 @@ default void testPostBinary() {
         }
     }
 
-    /**
-     * Test creating a new binary via POST with a digest header.
-     */
-    @Test
-    @DisplayName("Test creating a new binary via POST with a digest header")
-    default void testPostBinaryWithDigest() {
-        // POST an LDP-NR
-        try (final Response res = target().request().header(DIGEST, "md5=bUMuG430lSc5B2PWyoNIgA==")
-                .header(SLUG, generateRandomValue(getClass().getSimpleName()))
-                .post(entity(CONTENT, TEXT_PLAIN))) {
-            assertAll("Check POSTing LDP-NR with digest", checkNonRdfResponse(res, null));
-            final String resource = res.getLocation().toString();
-            assertTrue(resource.startsWith(getBaseURL()), "Check the response location");
-            assertTrue(resource.length() > getBaseURL().length(), "Check for a nested response location");
-        }
-    }
-
     /**
      * Test modifying a binary's description via PATCH.
      */
@@ -211,44 +192,4 @@ default void testBinaryIsInContainer() {
                         rdf.createIRI(getResourceLocation())), "Check for an ldp:contains triple");
         }
     }
-
-    /**
-     * Test that the SHA digest is generated.
-     */
-    @Test
-    @DisplayName("Test that the SHA digest is generated")
-    default void testBinaryWantDigestSha() {
-        // Test the SHA-1 algorithm
-        try (final Response res = target(getResourceLocation()).request().header(WANT_DIGEST, "SHA,MD5").get()) {
-            assertAll("Check binary with SHA-1 digest", checkNonRdfResponse(res, TEXT_PLAIN_TYPE));
-            assertEquals("sha=Z5pg2cWB1IqkKKMjh57cQKAeKp0=", res.getHeaderString(DIGEST), "Check the SHA digest value");
-        }
-    }
-
-    /**
-     * Test that the SHA-256 digest is generated.
-     */
-    @Test
-    @DisplayName("Test that the SHA-256 digest is generated")
-    default void testBinaryWantDigestSha256() {
-        // Test the SHA-256 algorithm
-        try (final Response res = target(getResourceLocation()).request().header(WANT_DIGEST, "SHA-256").get()) {
-            assertAll("Check binary with SHA-256 digest", checkNonRdfResponse(res, TEXT_PLAIN_TYPE));
-            assertEquals("sha-256=wZXqBpAjgZLSoADF419CRpJCurDcagOwnb/8VAiiQXA=", res.getHeaderString(DIGEST),
-                    "Check the SHA-256 digest value");
-        }
-    }
-
-    /**
-     * Test that an unknown digest is ignored.
-     */
-    @Test
-    @DisplayName("Test that an unknown digest is ignored")
-    default void testBinaryWantDigestUnknown() {
-        // Test an unknown digest algorithm
-        try (final Response res = target(getResourceLocation()).request().header(WANT_DIGEST, "FOO").get()) {
-            assertAll("Check binary with unknown digest", checkNonRdfResponse(res, TEXT_PLAIN_TYPE));
-            assertNull(res.getHeaderString(DIGEST), "Check that no Digest header is present");
-        }
-    }
 }

core/api/src/main/java/org/trellisldp/api/BinaryService.java

@@ -14,9 +14,6 @@
 package org.trellisldp.api;
 
 import java.io.InputStream;
-import java.security.DigestInputStream;
-import java.security.MessageDigest;
-import java.util.Set;
 import java.util.concurrent.CompletionStage;
 
 import org.apache.commons.rdf.api.IRI;
@@ -39,21 +36,6 @@ public interface BinaryService extends RetrievalService<Binary> {
      */
     CompletionStage<Void> setContent(BinaryMetadata metadata, InputStream stream);
 
-    /**
-     * Set the content for a binary object using a digest algorithm.
-     *
-     * @implSpec The default implementation will compute a digest while processing the {@code InputStream}.
-     * @param metadata the binary metadata
-     * @param stream the context
-     * @param algorithm the digest algorithm
-     * @return the new completion stage containing the server-computed digest.
-     */
-    default CompletionStage<MessageDigest> setContent(final BinaryMetadata metadata, final InputStream stream,
-                    final MessageDigest algorithm) {
-        final DigestInputStream input = new DigestInputStream(stream, algorithm);
-        return setContent(metadata, input).thenApply(future -> input.getMessageDigest());
-    }
-
     /**
      * Purge the content from its corresponding datastore.
      *
@@ -65,24 +47,6 @@ default CompletionStage<MessageDigest> setContent(final BinaryMetadata metadata,
      */
     CompletionStage<Void> purgeContent(IRI identifier);
 
-    /**
-     * Calculate the digest for a binary object.
-     *
-     * @apiNote As per RFC 3230, the digest value is calculated over the entire resource,
-     *          not just the HTTP payload.
-     * @param identifier the identifier
-     * @param algorithm the algorithm
-     * @return the new completion stage containing a computed digest for the binary resource
-     */
-    CompletionStage<MessageDigest> calculateDigest(IRI identifier, MessageDigest algorithm);
-
-    /**
-     * Get a list of supported algorithms.
-     *
-     * @return the supported digest algorithms
-     */
-    Set<String> supportedAlgorithms();
-
     /**
      * Get a new identifier.
      *