Implement Java modularity

Resolves #66

.travis.yml

@@ -42,6 +42,7 @@ jobs:
     - env: JOB=sonatype
     - env: JOB=docker
     - env: JOB=aws
+    - env: JOB=jpms
 
   include:
     # JDK 8
@@ -57,6 +58,13 @@ jobs:
       jdk: openjdk11
       script: travis_retry ./gradlew check install
 
+    # JDK 11 (modules)
+    - name: "Java 11 (modules)"
+      stage: test
+      jdk: openjdk11
+      env: JOB=jpms
+      script: ./gradlew clean check install --continue -Pjpms
+
     # deploy JDK 8 builds to Sonatype
     - name: "Publish to Sonatype"
       stage: deploy

auth/basic/build.gradle

@@ -5,6 +5,7 @@ description = 'Trellis Basic authentication filter'
 
 ext {
     moduleName = 'org.trellisldp.auth.basic'
+    testModules = ['tamaya.core']
 }
 
 dependencies {
@@ -14,8 +15,8 @@ dependencies {
 
     implementation("org.apache.tamaya:tamaya-api:$tamayaVersion")
     implementation("org.slf4j:slf4j-api:$slf4jVersion")
+    implementation("javax.xml.bind:jaxb-api:$jaxbVersion")
 
-    testRuntime("javax.xml.bind:jaxb-api:$jaxbVersion")
     testRuntime("javax.activation:javax.activation-api:$activationApiVersion")
 
     testImplementation("ch.qos.logback:logback-classic:$logbackVersion")

auth/basic/src/main/java/module-info.java

@@ -0,0 +1,25 @@
+/*
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+module org.trellisldp.auth.basic {
+    exports org.trellisldp.auth.basic;
+
+    requires slf4j.api;
+    requires tamaya.api;
+    requires javax.inject;
+    requires java.ws.rs;
+    requires java.xml.bind;
+    requires java.annotation;
+
+    uses org.apache.tamaya.spi.ConfigurationProviderSpi;
+}

auth/oauth/build.gradle

@@ -8,18 +8,19 @@ ext {
 }
 
 dependencies {
-    api("io.jsonwebtoken:jjwt-api:$jjwtVersion")
     api("javax.annotation:javax.annotation-api:$javaxAnnotationsVersion")
     api("javax.ws.rs:javax.ws.rs-api:$jaxrsVersion")
     api("org.glassfish.hk2.external:javax.inject:$javaxInjectVersion")
 
+    implementation("com.fasterxml.jackson.core:jackson-databind:$jacksonVersion")
     implementation("commons-io:commons-io:$commonsIoVersion")
-    implementation("io.jsonwebtoken:jjwt-impl:$jjwtVersion")
-    implementation("io.jsonwebtoken:jjwt-jackson:$jjwtVersion")
     implementation("org.apache.tamaya:tamaya-api:$tamayaVersion")
     implementation("org.slf4j:slf4j-api:$slf4jVersion")
+    implementation("javax.xml.bind:jaxb-api:$jaxbVersion")
+    implementation("io.jsonwebtoken:jjwt-jackson:$jjwtVersion")
+    implementation("io.jsonwebtoken:jjwt-api:$jjwtVersion")
+    implementation("io.jsonwebtoken:jjwt-impl:$jjwtVersion")
 
-    testRuntime("javax.xml.bind:jaxb-api:$jaxbVersion")
     testRuntime("javax.activation:javax.activation-api:$activationApiVersion")
 
     testImplementation("ch.qos.logback:logback-classic:$logbackVersion")
@@ -28,4 +29,3 @@ dependencies {
     testImplementation("org.glassfish.jersey.core:jersey-server:$jerseyVersion")
     testImplementation("org.mockito:mockito-core:$mockitoVersion")
 }
-

build.gradle

@@ -19,6 +19,8 @@ ext {
     commonsRdfVersion = '0.5.0'
     javaxAnnotationsVersion = '1.3.2'
     javaxInjectVersion = '2.5.0-b62'
+    javaxJmsVersion = '2.0.1'
+    javaxManagementVersion = '1.1.2'
     jaxrsVersion = '2.1.1'
     metricsVersion = '4.0.5'
     slf4jVersion = '1.7.25'
@@ -43,6 +45,7 @@ ext {
     kafkaVersion = '2.0.0'
     mustacheVersion = '0.9.5'
     rabbitMqVersion = '5.5.2'
+    validationVersion = '2.0.1.Final'
 
     /* Testing */
     apiguardianVersion = '1.0.0'
@@ -51,6 +54,7 @@ ext {
     commonsTextVersion = '1.6'
     junitVersion = '5.3.2'
     junitLauncherVersion = '1.3.2'
+    hamcrestVersion = '2.1'
     logbackVersion = '1.2.3'
     mockitoVersion = '2.23.4'
     qpidVersion = '7.1.0'
@@ -149,8 +153,11 @@ allprojects { subproj ->
     }
 
     configurations.all {
+        exclude group: 'commons-logging', module: 'commons-logging'
         resolutionStrategy.dependencySubstitution {
             substitute module("org.apache.geronimo.specs:geronimo-annotation_1.2_spec") with module ("javax.annotation:javax.annotation-api:$javaxAnnotationsVersion")
+            substitute module("org.apache.geronimo.specs:geronimo-jms_1.1_spec") with module("javax.jms:javax.jms-api:$javaxJmsVersion")
+            substitute module("org.apache.geronimo.specs:geronimo-j2ee-management_1.1_spec") with module("javax.management.j2ee:javax.management.j2ee-api:$javaxManagementVersion")
         }
         resolutionStrategy.eachDependency { DependencyResolveDetails details ->
             if (details.requested.group.startsWith('com.fasterxml.jackson.')) {
@@ -163,15 +170,81 @@ allprojects { subproj ->
 
 subprojects { subproj ->
 
-    sourceCompatibility = 1.8
-    targetCompatibility = 1.8
+    def jpms = JavaVersion.current().isJava11Compatible() && subproj.hasProperty("jpms") &&
+            sourceSets.main.allJava.getFiles().stream().map { file -> file.getName() }
+                    .anyMatch { file -> file == "module-info.java"}
+
+    sourceCompatibility = jpms ? 11 : 8
+    targetCompatibility = jpms ? 11 : 8
+
+    afterEvaluate {
+        if (jpms) {
+            compileJava {
+                inputs.property("moduleName", moduleName)
+                doFirst {
+                    options.compilerArgs = [
+                        '--module-path', classpath.asPath,
+                    ]
+                    classpath = files()
+                }
+            }
+            compileTestJava {
+                inputs.property("moduleName", moduleName)
+                def mods = subproj.ext.has("testModules") ? subproj.ext.get("testModules") : []
+                mods.add('org.junit.jupiter.api')
+                doFirst {
+                    options.compilerArgs = [
+                        '--module-path', classpath.asPath,
+                        '--add-modules', mods.join(','),
+                        '--patch-module', "$moduleName=" + files(sourceSets.test.java.srcDirs).asPath,
+                    ]
+                    mods.forEach { mod -> options.compilerArgs += [ '--add-reads', "$moduleName=$mod"] }
+                    classpath = files()
+                }
+            }
+            test {
+                inputs.property("moduleName", moduleName)
+                def mods = subproj.ext.has("testModules") ? subproj.ext.get("testModules") : []
+                mods.add('org.junit.jupiter.api')
+                doFirst {
+                    jvmArgs = [
+                        '--module-path', classpath.asPath,
+                        '--add-modules', 'ALL-MODULE-PATH',
+                        '--add-opens', "$moduleName/$moduleName=org.junit.platform.commons",
+                        '--add-opens', "$moduleName/$moduleName=org.mockito",
+                        '--patch-module', "$moduleName=" + files(sourceSets.main.output.resourcesDir, sourceSets.test.output).asPath,
+                    ]
+                    mods.forEach { mod -> jvmArgs += [ '--add-reads', "$moduleName=$mod"] }
+                    classpath = files()
+                }
+            }
+
+            javadoc {
+                options.addStringOption('-module-path', classpath.asPath)
+            }
+        }
+    }
+
+    sourceSets {
+        main {
+            java {
+                if (!jpms) {
+                    exclude '**/module-info.java'
+                }
+            }
+        }
+    }
 
     jar {
         from("$rootDir/LICENSE") {
             into "META-INF"
         }
     }
 
+    test {
+        useJUnitPlatform()
+    }
+
     checkstyle {
         configFile = rootProject.file('buildtools/src/main/resources/checkstyle/checkstyle.xml')
         configProperties.checkstyleConfigDir = rootProject.file('buildtools/src/main/resources/checkstyle/')
@@ -337,7 +410,7 @@ subprojects { subproj ->
             links 'https://www.dropwizard.io/1.3.5/dropwizard-core/apidocs/'
         }
 
-        if (JavaVersion.current().isJava9Compatible()) {
+        if (JavaVersion.current().isJava11Compatible()) {
             options.addBooleanOption('html5', true)
         }
     }
@@ -347,7 +420,7 @@ subprojects { subproj ->
                 "implSpec:a:Implementation Requirements:",
                 "implNote:a:Implementation Note:"]
 
-        if (JavaVersion.current().isJava9Compatible()) {
+        if (JavaVersion.current().isJava11Compatible()) {
             options.addBooleanOption('html5', true)
         }
     }
@@ -356,10 +429,6 @@ subprojects { subproj ->
         skipProject = JavaVersion.current().isJava10Compatible()
     }
 
-    test {
-        useJUnitPlatform()
-    }
-
     afterReleaseBuild.dependsOn docs
     afterReleaseBuild.dependsOn publish
 

components/agent/build.gradle

@@ -5,6 +5,7 @@ description = 'Trellis Agent'
 
 ext {
     moduleName = 'org.trellisldp.agent'
+    testModules = ['org.apache.commons.rdf.simple']
 }
 
 dependencies {
@@ -15,4 +16,3 @@ dependencies {
     testImplementation("ch.qos.logback:logback-classic:$logbackVersion")
     testImplementation("org.apache.commons:commons-rdf-simple:$commonsRdfVersion")
 }
-

components/agent/src/main/java/module-info.java

@@ -0,0 +1,24 @@
+/*
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+module org.trellisldp.agent {
+    exports org.trellisldp.agent;
+
+    requires transitive org.trellisldp.api;
+    requires transitive org.trellisldp.vocabulary;
+
+    requires org.apache.commons.rdf.api;
+
+    provides org.trellisldp.api.AgentService
+        with org.trellisldp.agent.SimpleAgentService;
+}

components/app-triplestore/build.gradle

@@ -6,12 +6,17 @@ ext {
     moduleName = 'org.trellisldp.app.triplestore'
 }
 
+configurations.all {
+    exclude group: 'javax.el', module: 'javax.el-api'
+    exclude group: 'com.google.code.findbugs', module: 'jsr305'
+}
+
 dependencies {
-    compile("com.github.jsonld-java:jsonld-java:$jsonldVersion")
+    compile("com.github.jsonld-java:jsonld-java:$jsonldVersion") {
+        exclude group: 'org.apache.httpcomponents', module: 'httpclient-osgi'
+        exclude group: 'org.apache.httpcomponents', module: 'httpcore-osgi'
+    }
     compile("commons-codec:commons-codec:$commonsCodecVersion")
-    compile("io.dropwizard:dropwizard-core:$dropwizardVersion")
-    compile("io.dropwizard:dropwizard-metrics:$dropwizardVersion")
-    compile("io.dropwizard:dropwizard-http2:$dropwizardVersion")
     compile("javax.activation:javax.activation-api:$activationApiVersion")
     compile("javax.jms:javax.jms-api:$jmsApiVersion")
     compile("org.apache.activemq:activemq-client:$activeMqVersion")
@@ -20,6 +25,10 @@ dependencies {
     compile("org.apache.jena:jena-tdb2:$jenaVersion")
     compile("org.apache.tamaya:tamaya-core:$tamayaVersion")
     compile("org.slf4j:slf4j-api:$slf4jVersion")
+    compile("javax.jms:javax.jms-api:$jmsApiVersion")
+    compile("javax.xml.bind:jaxb-api:$jaxbVersion")
+    compile("javax.validation:validation-api:$validationVersion")
+    compile("org.apache.commons:commons-rdf-api:$commonsRdfVersion")
     compile("org.apache.commons:commons-rdf-jena:$commonsRdfVersion") {
         exclude group: 'org.apache.jena', module: 'jena-osgi'
         exclude group: 'org.apache.servicemix.bundles', module: 'org.apache.servicemix.bundles.xerces'
@@ -29,6 +38,7 @@ dependencies {
     compile project(':trellis-io-jena')
     compile project(':trellis-api')
     compile project(':trellis-http')
+    compile project(':trellis-app')
     compile project(':trellis-vocabulary')
     compile project(':trellis-file')
     compile project(':trellis-namespaces')
@@ -40,23 +50,29 @@ dependencies {
     compile project(':trellis-jms')
     compile project(':trellis-rdfa')
     compile project(':trellis-kafka')
-    compile project(':trellis-app')
     compile project(':trellis-auth-oauth')
     compile project(':trellis-auth-basic')
 
-    runtime ("javax.xml.bind:jaxb-api:$jaxbVersion")
+    compile("io.dropwizard:dropwizard-core:$dropwizardVersion")
+    compile("io.dropwizard:dropwizard-metrics:$dropwizardVersion")
+    compile("io.dropwizard:dropwizard-http2:$dropwizardVersion")
 
-    testCompile("io.dropwizard:dropwizard-client:$dropwizardVersion")
-    testCompile("io.dropwizard:dropwizard-testing:$dropwizardVersion")
-    testCompile("org.apache.activemq:activemq-broker:$activeMqVersion")
-    testCompile("org.awaitility:awaitility:$awaitilityVersion")
+    testCompile("org.awaitility:awaitility:$awaitilityVersion") {
+        exclude group: "org.hamcrest", module: 'hamcrest-core'
+        exclude group: 'org.hamcrest', module: 'hamcrest-library'
+    }
+    testCompile("org.hamcrest:hamcrest:$hamcrestVersion")
     testCompile("ch.qos.logback:logback-classic:$logbackVersion")
     testCompile("org.mockito:mockito-core:$mockitoVersion")
     testCompile project(':trellis-test')
+    testCompile("io.dropwizard:dropwizard-client:$dropwizardVersion")
+    testCompile("io.dropwizard:dropwizard-testing:$dropwizardVersion")
+    testCompile("org.apache.activemq:activemq-broker:$activeMqVersion")
 }
 
 jar {
     manifest {
         attributes('Automatic-Module-Name': moduleName)
     }
 }
+

components/app-triplestore/src/test/java/org/trellisldp/app/triplestore/TrellisApplicationTest.java

@@ -251,9 +251,9 @@ private static DropwizardTestSupport<AppConfiguration> buildApplication() {
                 config("notifications.type", "JMS"),
                 config("notifications.connectionString", "vm://localhost"),
                 config("auth.basic.usersFile", resourceFilePath("users.auth")),
-                config("binaries", resourceFilePath("data") + "/binaries"),
-                config("mementos", resourceFilePath("data") + "/mementos"),
-                config("namespaces", resourceFilePath("data/namespaces.json")));
+                config("binaries", resourceFilePath("app-data") + "/binaries"),
+                config("mementos", resourceFilePath("app-data") + "/mementos"),
+                config("namespaces", resourceFilePath("app-data/namespaces.json")));
     }
 
     private Graph convertToGraph(final Message msg) {