diff --git a/.gitattributes b/.gitattributes deleted file mode 100644 index 3c38ee0..0000000 --- a/.gitattributes +++ /dev/null @@ -1,2 +0,0 @@ -*.nsq filter=lfs diff=lfs merge=lfs -text -example_output/*.html linguist-generated \ No newline at end of file diff --git a/.gitignore b/.gitignore deleted file mode 100644 index cd1047b..0000000 --- a/.gitignore +++ /dev/null @@ -1,7 +0,0 @@ -*.ipynb -*.ipynb_checkpoints -*.vscode -pylint* -.DS_Store -build -*.egg-info \ No newline at end of file diff --git a/Figures/Fig1.png b/Figures/Fig1.png deleted file mode 100644 index b3ab6f9..0000000 Binary files a/Figures/Fig1.png and /dev/null differ diff --git a/README.md b/README.md index c2c1b68..5de2a41 100644 --- a/README.md +++ b/README.md @@ -1,11 +1,5 @@ -[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/olivar/README.html) -[![Anaconda-Server Badge](https://anaconda.org/bioconda/olivar/badges/downloads.svg)](https://anaconda.org/bioconda/olivar) - -# Olivar multiplex PCR tiling design - ## Description Olivar is a Python software for multiplex PCR tiling design. Olivar first builds an index for each target of interest, incorporating undesired sequence features such as homologous regions, SNPs and extreme GC content. Olivar then designs tiled amplicons covering a single index or multiple indexes, and minimizes primer dimers with the [SADDLE](https://doi.org/10.1038/s41467-022-29500-4) algorithm. Olivar is published as an [article](https://doi.org/10.1038/s41467-024-49957-9) on Nature Communications. -![](Figures/Fig1.png) ## Web Interface diff --git a/example.py b/example.py deleted file mode 100644 index 397c1ed..0000000 --- a/example.py +++ /dev/null @@ -1,94 +0,0 @@ -#!/usr/bin/env python3 -# -*- coding: utf-8 -*- - - -from olivar import build, tiling, save, validate - - -if __name__ == "__main__": - build( - fasta_path = 'example_input/EPI_ISL_402124.fasta', # Path to the fasta reference sequence. - - var_path = 'example_input/delta_omicron_loc.csv', # Optional, path to the csv file of SNP coordinates and frequencies. - # Required columns: "START", "STOP", "FREQ". "FREQ" is considered as 1.0 if empty. Coordinates are 1-based. - - BLAST_db = 'example_input/Human/GRCh38_primary', # Optional, path to the BLAST database. - # Note that this path should end with the name of the BLAST database (e.g., "example_input/Human/GRCh38_primary"). - - out_path = './', # Output directory. - title = 'olivar-ref', # Name of the Olivar reference file [olivar-ref]. - threads = 1 # Number of threads. - ) - - - tiling( - ref_path = 'example_output/olivar-ref.olvr', # Path to the Olivar reference file (.olvr). - out_path = './', # Output directory. - title = 'olivar-design', # Name of this design [olivar-design]. - - max_amp_len = 420, # Maximum amplicon length [420]. - min_amp_len = 252, # Minimum amplicon length. 0.9*{max-amp-len} if set as None. Minimum 120. - w_egc = 1, # Weight for extreme GC content [1.0]. - w_lc = 1, # Weight for low sequence complexity [1.0]. - w_ns = 1, # Weight for non-specificity [1.0]. - w_var = 1, # Weight for variations [1.0]. - - temperature = 60, # PCR annealing temperature [60.0]. - salinity = 0.18, # Concentration of monovalent ions in units of molar [0.18]. - dG_max = -11.8, # Maximum free energy change of a primer in kcal/mol [-11.8]. - min_GC = 0.2, # Minimum GC content of a primer [0.2]. - max_GC = 0.75, # Maximum GC content of a primer [0.75]. - min_complexity = 0.4, # Minimum sequence complexity of a primer [0.4]. - max_len = 36, # Maximum length of a primer [36]. - check_var = True, # Filter out primer candidates with variations within 5nt of 3' end [False]. - # Setting check_var=True is not recommended when a lot of variations are provided, - # since this would significantly reduce the number of primer candidates. - - fP_prefix = '', # Prefix of forward primer. Empty string '' by default. - rP_prefix = '', # Prefix of reverse primer. Empty string '' by default. - - seed = 10, # Random seed for optimizing primer design regions and primer dimer [10]. - threads = 1, # Number of threads. - ) - - - # save( - # design_out = 'example_output/olivar-design.olvd', # Path to the Olivar design file (.olvd) - # out_path = './', # Output directory. - # ) - - - validate( - primer_pool = 'example_output/olivar-design.csv', # Path to the csv file of a primer pool. - # Required columns: "amp_id" (amplicon name), "fP" (sequence of forward primer), "rP" (sequence of reverse primer), "pool" (pool number, e.g., 1). - - pool = 1, # Primer pool number [1]. - - BLAST_db = 'example_input/Human/GRCh38_primary', # Optional, path to the BLAST database. - # Note that this path should end with the name of the BLAST database (e.g., "example_input/Human/GRCh38_primary"). - - out_path = './', # Output directory. - title = 'olivar-val', # Name of validation. - - max_amp_len = 1500, # Maximum length of predicted non-specific amplicon [1500]. - temperature = 60, # PCR annealing temperature [60.0]. - threads = 1 # Number of threads. - ) - - - validate( - primer_pool = 'example_output/olivar-design.csv', # Path to the csv file of a primer pool. - # Required columns: "amp_id" (amplicon name), "fP" (sequence of forward primer), "rP" (sequence of reverse primer), "pool" (pool number, e.g., 1). - - pool = 2, # Primer pool number [1]. - - BLAST_db = 'example_input/Human/GRCh38_primary', # Optional, path to the BLAST database. - # Note that this path should end with the name of the BLAST database (e.g., "example_input/Human/GRCh38_primary"). - - out_path = './', # Output directory. - title = 'olivar-val', # Name of validation. - - max_amp_len = 1500, # Maximum length of predicted non-specific amplicon [1500]. - temperature = 60, # PCR annealing temperature [60.0]. - threads = 1 # Number of threads. - ) diff --git a/example_input/EPI_ISL_402124.fasta b/example_input/EPI_ISL_402124.fasta deleted file mode 100644 index c83de92..0000000 --- a/example_input/EPI_ISL_402124.fasta +++ /dev/null @@ -1,375 +0,0 @@ ->hCoV-19/Wuhan/WIV04/2019|EPI_ISL_402124|2019-12-30 -ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA -AATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGG -ACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTT -CGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGC -CTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGGAGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACAT -CTTAAAGATGGCACTTGTGGCTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAA -ACGTTCGGATGCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGGTAGCAGAACTCGAAGGCATTCAGTACGGTC -GTAGTGGTGAGACACTTGGTGTCCTTGTCCCTCATGTGGGCGAAATACCAGTGGCTTACCGCAAGGTTCTTCTTCGTAAG -AACGGTAATAAAGGAGCTGGTGGCCATAGTTACGGCGCCGATCTAAAGTCATTTGACTTAGGCGACGAGCTTGGCACTGA -TCCTTATGAAGATTTTCAAGAAAACTGGAACACTAAACATAGCAGTGGTGTTACCCGTGAACTCATGCGTGAGCTTAACG -GAGGGGCATACACTCGCTATGTCGATAACAACTTCTGTGGCCCTGATGGCTACCCTCTTGAGTGCATTAAAGACCTTCTA -GCACGTGCTGGTAAAGCTTCATGCACTTTGTCCGAACAACTGGACTTTATTGACACTAAGAGGGGTGTATACTGCTGCCG -TGAACATGAGCATGAAATTGCTTGGTACACGGAACGTTCTGAAAAGAGCTATGAATTGCAGACACCTTTTGAAATTAAAT -TGGCAAAGAAATTTGACACCTTCAATGGGGAATGTCCAAATTTTGTATTTCCCTTAAATTCCATAATCAAGACTATTCAA -CCAAGGGTTGAAAAGAAAAAGCTTGATGGCTTTATGGGTAGAATTCGATCTGTCTATCCAGTTGCGTCACCAAATGAATG -CAACCAAATGTGCCTTTCAACTCTCATGAAGTGTGATCATTGTGGTGAAACTTCATGGCAGACGGGCGATTTTGTTAAAG -CCACTTGCGAATTTTGTGGCACTGAGAATTTGACTAAAGAAGGTGCCACTACTTGTGGTTACTTACCCCAAAATGCTGTT -GTTAAAATTTATTGTCCAGCATGTCACAATTCAGAAGTAGGACCTGAGCATAGTCTTGCCGAATACCATAATGAATCTGG -CTTGAAAACCATTCTTCGTAAGGGTGGTCGCACTATTGCCTTTGGAGGCTGTGTGTTCTCTTATGTTGGTTGCCATAACA -AGTGTGCCTATTGGGTTCCACGTGCTAGCGCTAACATAGGTTGTAACCATACAGGTGTTGTTGGAGAAGGTTCCGAAGGT -CTTAATGACAACCTTCTTGAAATACTCCAAAAAGAGAAAGTCAACATCAATATTGTTGGTGACTTTAAACTTAATGAAGA -GATCGCCATTATTTTGGCATCTTTTTCTGCTTCCACAAGTGCTTTTGTGGAAACTGTGAAAGGTTTGGATTATAAAGCAT -TCAAACAAATTGTTGAATCCTGTGGTAATTTTAAAGTTACAAAAGGAAAAGCTAAAAAAGGTGCCTGGAATATTGGTGAA -CAGAAATCAATACTGAGTCCTCTTTATGCATTTGCATCAGAGGCTGCTCGTGTTGTACGATCAATTTTCTCCCGCACTCT -TGAAACTGCTCAAAATTCTGTGCGTGTTTTACAGAAGGCCGCTATAACAATACTAGATGGAATTTCACAGTATTCACTGA -GACTCATTGATGCTATGATGTTCACATCTGATTTGGCTACTAACAATCTAGTTGTAATGGCCTACATTACAGGTGGTGTT -GTTCAGTTGACTTCGCAGTGGCTAACTAACATCTTTGGCACTGTTTATGAAAAACTCAAACCCGTCCTTGATTGGCTTGA -AGAGAAGTTTAAGGAAGGTGTAGAGTTTCTTAGAGACGGTTGGGAAATTGTTAAATTTATCTCAACCTGTGCTTGTGAAA -TTGTCGGTGGACAAATTGTCACCTGTGCAAAGGAAATTAAGGAGAGTGTTCAGACATTCTTTAAGCTTGTAAATAAATTT -TTGGCTTTGTGTGCTGACTCTATCATTATTGGTGGAGCTAAACTTAAAGCCTTGAATTTAGGTGAAACATTTGTCACGCA -CTCAAAGGGATTGTACAGAAAGTGTGTTAAATCCAGAGAAGAAACTGGCCTACTCATGCCTCTAAAAGCCCCAAAAGAAA -TTATCTTCTTAGAGGGAGAAACACTTCCCACAGAAGTGTTAACAGAGGAAGTTGTCTTGAAAACTGGTGATTTACAACCA -TTAGAACAACCTACTAGTGAAGCTGTTGAAGCTCCATTGGTTGGTACACCAGTTTGTATTAACGGGCTTATGTTGCTCGA -AATCAAAGACACAGAAAAGTACTGTGCCCTTGCACCTAATATGATGGTAACAAACAATACCTTCACACTCAAAGGCGGTG -CACCAACAAAGGTTACTTTTGGTGATGACACTGTGATAGAAGTGCAAGGTTACAAGAGTGTGAATATCACTTTTGAACTT -GATGAAAGGATTGATAAAGTACTTAATGAGAAGTGCTCTGCCTATACAGTTGAACTCGGTACAGAAGTAAATGAGTTCGC -CTGTGTTGTGGCAGATGCTGTCATAAAAACTTTGCAACCAGTATCTGAATTACTTACACCACTGGGCATTGATTTAGATG -AGTGGAGTATGGCTACATACTACTTATTTGATGAGTCTGGTGAGTTTAAATTGGCTTCACATATGTATTGTTCTTTCTAC -CCTCCAGATGAGGATGAAGAAGAAGGTGATTGTGAAGAAGAAGAGTTTGAGCCATCAACTCAATATGAGTATGGTACTGA -AGATGATTACCAAGGTAAACCTTTGGAATTTGGTGCCACTTCTGCTGCTCTTCAACCTGAAGAAGAGCAAGAAGAAGATT -GGTTAGATGATGATAGTCAACAAACTGTTGGTCAACAAGACGGCAGTGAGGACAATCAGACAACTACTATTCAAACAATT -GTTGAGGTTCAACCTCAATTAGAGATGGAACTTACACCAGTTGTTCAGACTATTGAAGTGAATAGTTTTAGTGGTTATTT -AAAACTTACTGACAATGTATACATTAAAAATGCAGACATTGTGGAAGAAGCTAAAAAGGTAAAACCAACAGTGGTTGTTA -ATGCAGCCAATGTTTACCTTAAACATGGAGGAGGTGTTGCAGGAGCCTTAAATAAGGCTACTAACAATGCCATGCAAGTT -GAATCTGATGATTACATAGCTACTAATGGACCACTTAAAGTGGGTGGTAGTTGTGTTTTAAGCGGACACAATCTTGCTAA -ACACTGTCTTCATGTTGTCGGCCCAAATGTTAACAAAGGTGAAGACATTCAACTTCTTAAGAGTGCTTATGAAAATTTTA -ATCAGCACGAAGTTCTACTTGCACCATTATTATCAGCTGGTATTTTTGGTGCTGACCCTATACATTCTTTAAGAGTTTGT -GTAGATACTGTTCGCACAAATGTCTACTTAGCTGTCTTTGATAAAAATCTCTATGACAAACTTGTTTCAAGCTTTTTGGA -AATGAAGAGTGAAAAGCAAGTTGAACAAAAGATCGCTGAGATTCCTAAAGAGGAAGTTAAGCCATTTATAACTGAAAGTA -AACCTTCAGTTGAACAGAGAAAACAAGATGATAAGAAAATCAAAGCTTGTGTTGAAGAAGTTACAACAACTCTGGAAGAA -ACTAAGTTCCTCACAGAAAACTTGTTACTTTATATTGACATTAATGGCAATCTTCATCCAGATTCTGCCACTCTTGTTAG -TGACATTGACATCACTTTCTTAAAGAAAGATGCTCCATATATAGTGGGTGATGTTGTTCAAGAGGGTGTTTTAACTGCTG -TGGTTATACCTACTAAAAAGGCTGGTGGCACTACTGAAATGCTAGCGAAAGCTTTGAGAAAAGTGCCAACAGACAATTAT -ATAACCACTTACCCGGGTCAGGGTTTAAATGGTTACACTGTAGAGGAGGCAAAGACAGTGCTTAAAAAGTGTAAAAGTGC -CTTTTACATTCTACCATCTATTATCTCTAATGAGAAGCAAGAAATTCTTGGAACTGTTTCTTGGAATTTGCGAGAAATGC -TTGCACATGCAGAAGAAACACGCAAATTAATGCCTGTCTGTGTGGAAACTAAAGCCATAGTTTCAACTATACAGCGTAAA -TATAAGGGTATTAAAATACAAGAGGGTGTGGTTGATTATGGTGCTAGATTTTACTTTTACACCAGTAAAACAACTGTAGC -GTCACTTATCAACACACTTAACGATCTAAATGAAACTCTTGTTACAATGCCACTTGGCTATGTAACACATGGCTTAAATT -TGGAAGAAGCTGCTCGGTATATGAGATCTCTCAAAGTGCCAGCTACAGTTTCTGTTTCTTCACCTGATGCTGTTACAGCG -TATAATGGTTATCTTACTTCTTCTTCTAAAACACCTGAAGAACATTTTATTGAAACCATCTCACTTGCTGGTTCCTATAA -AGATTGGTCCTATTCTGGACAATCTACACAACTAGGTATAGAATTTCTTAAGAGAGGTGATAAAAGTGTATATTACACTA -GTAATCCTACCACATTCCACCTAGATGGTGAAGTTATCACCTTTGACAATCTTAAGACACTTCTTTCTTTGAGAGAAGTG -AGGACTATTAAGGTGTTTACAACAGTAGACAACATTAACCTCCACACGCAAGTTGTGGACATGTCAATGACATATGGACA -ACAGTTTGGTCCAACTTATTTGGATGGAGCTGATGTTACTAAAATAAAACCTCATAATTCACATGAAGGTAAAACATTTT -ATGTTTTACCTAATGATGACACTCTACGTGTTGAGGCTTTTGAGTACTACCACACAACTGATCCTAGTTTTCTGGGTAGG -TACATGTCAGCATTAAATCACACTAAAAAGTGGAAATACCCACAAGTTAATGGTTTAACTTCTATTAAATGGGCAGATAA -CAACTGTTATCTTGCCACTGCATTGTTAACACTCCAACAAATAGAGTTGAAGTTTAATCCACCTGCTCTACAAGATGCTT -ATTACAGAGCAAGGGCTGGTGAAGCTGCTAACTTTTGTGCACTTATCTTAGCCTACTGTAATAAGACAGTAGGTGAGTTA -GGTGATGTTAGAGAAACAATGAGTTACTTGTTTCAACATGCCAATTTAGATTCTTGCAAAAGAGTCTTGAACGTGGTGTG -TAAAACTTGTGGACAACAGCAGACAACCCTTAAGGGTGTAGAAGCTGTTATGTACATGGGCACACTTTCTTATGAACAAT -TTAAGAAAGGTGTTCAGATACCTTGTACGTGTGGTAAACAAGCTACAAAATATCTAGTACAACAGGAGTCACCTTTTGTT -ATGATGTCAGCACCACCTGCTCAGTATGAACTTAAGCATGGTACATTTACTTGTGCTAGTGAGTACACTGGTAATTACCA -GTGTGGTCACTATAAACATATAACTTCTAAAGAAACTTTGTATTGCATAGACGGTGCTTTACTTACAAAGTCCTCAGAAT -ACAAAGGTCCTATTACGGATGTTTTCTACAAAGAAAACAGTTACACAACAACCATAAAACCAGTTACTTATAAATTGGAT -GGTGTTGTTTGTACAGAAATTGACCCTAAGTTGGACAATTATTATAAGAAAGACAATTCTTATTTCACAGAGCAACCAAT -TGATCTTGTACCAAACCAACCATATCCAAACGCAAGCTTCGATAATTTTAAGTTTGTATGTGATAATATCAAATTTGCTG -ATGATTTAAACCAGTTAACTGGTTATAAGAAACCTGCTTCAAGAGAGCTTAAAGTTACATTTTTCCCTGACTTAAATGGT -GATGTGGTGGCTATTGATTATAAACACTACACACCCTCTTTTAAGAAAGGAGCTAAATTGTTACATAAACCTATTGTTTG -GCATGTTAACAATGCAACTAATAAAGCCACGTATAAACCAAATACCTGGTGTATACGTTGTCTTTGGAGCACAAAACCAG -TTGAAACATCAAATTCGTTTGATGTACTGAAGTCAGAGGACGCGCAGGGAATGGATAATCTTGCCTGCGAAGATCTAAAA -CCAGTCTCTGAAGAAGTAGTGGAAAATCCTACCATACAGAAAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGT -AGGAGACATTATACTTAAACCAGCAAATAATAGTTTAAAAATTACAGAAGAGGTTGGCCACACAGATCTAATGGCTGCTT -ATGTAGACAATTCTAGTCTTACTATTAAGAAACCTAATGAATTATCTAGAGTATTAGGTTTGAAAACCCTTGCTACTCAT -GGTTTAGCTGCTGTTAATAGTGTCCCTTGGGATACTATAGCTAATTATGCTAAGCCTTTTCTTAACAAAGTTGTTAGTAC -AACTACTAACATAGTTACACGGTGTTTAAACCGTGTTTGTACTAATTATATGCCTTATTTCTTTACTTTATTGCTACAAT -TGTGTACTTTTACTAGAAGTACAAATTCTAGAATTAAAGCATCTATGCCGACTACTATAGCAAAGAATACTGTTAAGAGT -GTCGGTAAATTTTGTCTAGAGGCTTCATTTAATTATTTGAAGTCACCTAATTTTTCTAAACTGATAAATATTATAATTTG -GTTTTTACTATTAAGTGTTTGCCTAGGTTCTTTAATCTACTCAACCGCTGCTTTAGGTGTTTTAATGTCTAATTTAGGCA -TGCCTTCTTACTGTACTGGTTACAGAGAAGGCTATTTGAACTCTACTAATGTCACTATTGCAACCTACTGTACTGGTTCT -ATACCTTGTAGTGTTTGTCTTAGTGGTTTAGATTCTTTAGACACCTATCCTTCTTTAGAAACTATACAAATTACCATTTC -ATCTTTTAAATGGGATTTAACTGCTTTTGGCTTAGTTGCAGAGTGGTTTTTGGCATATATTCTTTTCACTAGGTTTTTCT -ATGTACTTGGATTGGCTGCAATCATGCAATTGTTTTTCAGCTATTTTGCAGTACATTTTATTAGTAATTCTTGGCTTATG -TGGTTAATAATTAATCTTGTACAAATGGCCCCGATTTCAGCTATGGTTAGAATGTACATCTTCTTTGCATCATTTTATTA -TGTATGGAAAAGTTATGTGCATGTTGTAGACGGTTGTAATTCATCAACTTGTATGATGTGTTACAAACGTAATAGAGCAA -CAAGAGTCGAATGTACAACTATTGTTAATGGTGTTAGAAGGTCCTTTTATGTCTATGCTAATGGAGGTAAAGGCTTTTGC -AAACTACACAATTGGAATTGTGTTAATTGTGATACATTCTGTGCTGGTAGTACATTTATTAGTGATGAAGTTGCGAGAGA -CTTGTCACTACAGTTTAAAAGACCAATAAATCCTACTGACCAGTCTTCTTACATCGTTGATAGTGTTACAGTGAAGAATG -GTTCCATCCATCTTTACTTTGATAAAGCTGGTCAAAAGACTTATGAAAGACATTCTCTCTCTCATTTTGTTAACTTAGAC -AACCTGAGAGCTAATAACACTAAAGGTTCATTGCCTATTAATGTTATAGTTTTTGATGGTAAATCAAAATGTGAAGAATC -ATCTGCAAAATCAGCGTCTGTTTACTACAGTCAGCTTATGTGTCAACCTATACTGTTACTAGATCAGGCATTAGTGTCTG -ATGTTGGTGATAGTGCGGAAGTTGCAGTTAAAATGTTTGATGCTTACGTTAATACGTTTTCATCAACTTTTAACGTACCA -ATGGAAAAACTCAAAACACTAGTTGCAACTGCAGAAGCTGAACTTGCAAAGAATGTGTCCTTAGACAATGTCTTATCTAC -TTTTATTTCAGCAGCTCGGCAAGGGTTTGTTGATTCAGATGTAGAAACTAAAGATGTTGTTGAATGTCTTAAATTGTCAC -ATCAATCTGACATAGAAGTTACTGGCGATAGTTGTAATAACTATATGCTCACCTATAACAAAGTTGAAAACATGACACCC -CGTGACCTTGGTGCTTGTATTGACTGTAGTGCGCGTCATATTAATGCGCAGGTAGCAAAAAGTCACAACATTGCTTTGAT -ATGGAACGTTAAAGATTTCATGTCATTGTCTGAACAACTACGAAAACAAATACGTAGTGCTGCTAAAAAGAATAACTTAC -CTTTTAAGTTGACATGTGCAACTACTAGACAAGTTGTTAATGTTGTAACAACAAAGATAGCACTTAAGGGTGGTAAAATT -GTTAATAATTGGTTGAAGCAGTTAATTAAAGTTACACTTGTGTTCCTTTTTGTTGCTGCTATTTTCTATTTAATAACACC -TGTTCATGTCATGTCTAAACATACTGACTTTTCAAGTGAAATCATAGGATACAAGGCTATTGATGGTGGTGTCACTCGTG -ACATAGCATCTACAGATACTTGTTTTGCTAACAAACATGCTGATTTTGACACATGGTTTAGCCAGCGTGGTGGTAGTTAT -ACTAATGACAAAGCTTGCCCATTGATTGCTGCAGTCATAACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCAC -GATATTACGCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCAGTTGGTAACATCTGTTACACAC -CATCAAAACTTATAGAGTACACTGACTTTGCAACATCAGCTTGTGTTTTGGCTGCTGAATGTACAATTTTTAAAGATGCT -TCTGGTAAGCCAGTACCATATTGTTATGATACCAATGTACTAGAAGGTTCTGTTGCTTATGAAAGTTTACGCCCTGACAC -ACGTTATGTGCTCATGGATGGCTCTATTATTCAATTTCCTAACACCTACCTTGAAGGTTCTGTTAGAGTGGTAACAACTT -TTGATTCTGAGTACTGTAGGCACGGCACTTGTGAAAGATCAGAAGCTGGTGTTTGTGTATCTACTAGTGGTAGATGGGTA -CTTAACAATGATTATTACAGATCTTTACCAGGAGTTTTCTGTGGTGTAGATGCTGTAAATTTACTTACTAATATGTTTAC -ACCACTAATTCAACCTATTGGTGCTTTGGACATATCAGCATCTATAGTAGCTGGTGGTATTGTAGCTATCGTAGTAACAT -GCCTTGCCTACTATTTTATGAGGTTTAGAAGAGCTTTTGGTGAATACAGTCATGTAGTTGCCTTTAATACTTTACTATTC -CTTATGTCATTCACTGTACTCTGTTTAACACCAGTTTACTCATTCTTACCTGGTGTTTATTCTGTTATTTACTTGTACTT -GACATTTTATCTTACTAATGATGTTTCTTTTTTAGCACATATTCAGTGGATGGTTATGTTCACACCTTTAGTACCTTTCT -GGATAACAATTGCTTATATCATTTGTATTTCCACAAAGCATTTCTATTGGTTCTTTAGTAATTACCTAAAGAGACGTGTA -GTCTTTAATGGTGTTTCCTTTAGTACTTTTGAAGAAGCTGCGCTGTGCACCTTTTTGTTAAATAAAGAAATGTATCTAAA -GTTGCGTAGTGATGTGCTATTACCTCTTACGCAATATAATAGATACTTAGCTCTTTATAATAAGTACAAGTATTTTAGTG -GAGCAATGGATACAACTAGCTACAGAGAAGCTGCTTGTTGTCATCTCGCAAAGGCTCTCAATGACTTCAGTAACTCAGGT -TCTGATGTTCTTTACCAACCACCACAAACCTCTATCACCTCAGCTGTTTTGCAGAGTGGTTTTAGAAAAATGGCATTCCC -ATCTGGTAAAGTTGAGGGTTGTATGGTACAAGTAACTTGTGGTACAACTACACTTAACGGTCTTTGGCTTGATGACGTAG -TTTACTGTCCAAGACATGTGATCTGCACCTCTGAAGACATGCTTAACCCTAATTATGAAGATTTACTCATTCGTAAGTCT -AATCATAATTTCTTGGTACAGGCTGGTAATGTTCAACTCAGGGTTATTGGACATTCTATGCAAAATTGTGTACTTAAGCT -TAAGGTTGATACAGCCAATCCTAAGACACCTAAGTATAAGTTTGTTCGCATTCAACCAGGACAGACTTTTTCAGTGTTAG -CTTGTTACAATGGTTCACCATCTGGTGTTTACCAATGTGCTATGAGGCCCAATTTCACTATTAAGGGTTCATTCCTTAAT -GGTTCATGTGGTAGTGTTGGTTTTAACATAGATTATGACTGTGTCTCTTTTTGTTACATGCACCATATGGAATTACCAAC -TGGAGTTCATGCTGGCACAGACTTAGAAGGTAACTTTTATGGACCTTTTGTTGACAGGCAAACAGCACAAGCAGCTGGTA -CGGACACAACTATTACAGTTAATGTTTTAGCTTGGTTGTACGCTGCTGTTATAAATGGAGACAGGTGGTTTCTCAATCGA -TTTACCACAACTCTTAATGACTTTAACCTTGTGGCTATGAAGTACAATTATGAACCTCTAACACAAGACCATGTTGACAT -ACTAGGACCTCTTTCTGCTCAAACTGGAATTGCCGTTTTAGATATGTGTGCTTCATTAAAAGAATTACTGCAAAATGGTA -TGAATGGACGTACCATATTGGGTAGTGCTTTATTAGAAGATGAATTTACACCTTTTGATGTTGTTAGACAATGCTCAGGT -GTTACTTTCCAAAGTGCAGTGAAAAGAACAATCAAGGGTACACACCACTGGTTGTTACTCACAATTTTGACTTCACTTTT -AGTTTTAGTCCAGAGTACTCAATGGTCTTTGTTCTTTTTTTTGTATGAAAATGCCTTTTTACCTTTTGCTATGGGTATTA -TTGCTATGTCTGCTTTTGCAATGATGTTTGTCAAACATAAGCATGCATTTCTCTGTTTGTTTTTGTTACCTTCTCTTGCC -ACTGTAGCTTATTTTAATATGGTCTATATGCCTGCTAGTTGGGTGATGCGTATTATGACATGGTTGGATATGGTTGATAC -TAGTTTGTCTGGTTTTAAGCTAAAAGACTGTGTTATGTATGCATCAGCTGTAGTGTTACTAATCCTTATGACAGCAAGAA -CTGTGTATGATGATGGTGCTAGGAGAGTGTGGACACTTATGAATGTCTTGACACTCGTTTATAAAGTTTATTATGGTAAT -GCTTTAGATCAAGCCATTTCCATGTGGGCTCTTATAATCTCTGTTACTTCTAACTACTCAGGTGTAGTTACAACTGTCAT -GTTTTTGGCCAGAGGTATTGTTTTTATGTGTGTTGAGTATTGCCCTATTTTCTTCATAACTGGTAATACACTTCAGTGTA -TAATGCTAGTTTATTGTTTCTTAGGCTATTTTTGTACTTGTTACTTTGGCCTCTTTTGTTTACTCAACCGCTACTTTAGA -CTGACTCTTGGTGTTTATGATTACTTAGTTTCTACACAGGAGTTTAGATATATGAATTCACAGGGACTACTCCCACCCAA -GAATAGCATAGATGCCTTCAAACTCAACATTAAATTGTTGGGTGTTGGTGGCAAACCTTGTATCAAAGTAGCCACTGTAC -AGTCTAAAATGTCAGATGTAAAGTGCACATCAGTAGTCTTACTCTCAGTTTTGCAACAACTCAGAGTAGAATCATCATCT -AAATTGTGGGCTCAATGTGTCCAGTTACACAATGACATTCTCTTAGCTAAAGATACTACTGAAGCCTTTGAAAAAATGGT -TTCACTACTTTCTGTTTTGCTTTCCATGCAGGGTGCTGTAGACATAAACAAGCTTTGTGAAGAAATGCTGGACAACAGGG -CAACCTTACAAGCTATAGCCTCAGAGTTTAGTTCCCTTCCATCATATGCAGCTTTTGCTACTGCTCAAGAAGCTTATGAG -CAGGCTGTTGCTAATGGTGATTCTGAAGTTGTTCTTAAAAAGTTGAAGAAGTCTTTGAATGTGGCTAAATCTGAATTTGA -CCGTGATGCAGCCATGCAACGTAAGTTGGAAAAGATGGCTGATCAAGCTATGACCCAAATGTATAAACAGGCTAGATCTG -AGGACAAGAGGGCAAAAGTTACTAGTGCTATGCAGACAATGCTTTTCACTATGCTTAGAAAGTTGGATAATGATGCACTC -AACAACATTATCAACAATGCAAGAGATGGTTGTGTTCCCTTGAACATAATACCTCTTACAACAGCAGCCAAACTAATGGT -TGTCATACCAGACTATAACACATATAAAAATACGTGTGATGGTACAACATTTACTTATGCATCAGCATTGTGGGAAATCC -AACAGGTTGTAGATGCAGATAGTAAAATTGTTCAACTTAGTGAAATTAGTATGGACAATTCACCTAATTTAGCATGGCCT -CTTATTGTAACAGCTTTAAGGGCCAATTCTGCTGTCAAATTACAGAATAATGAGCTTAGTCCTGTTGCACTACGACAGAT -GTCTTGTGCTGCCGGTACTACACAAACTGCTTGCACTGATGACAATGCGTTAGCTTACTACAACACAACAAAGGGAGGTA -GGTTTGTACTTGCACTGTTATCCGATTTACAGGATTTGAAATGGGCTAGATTCCCTAAGAGTGATGGAACTGGTACTATC -TATACAGAACTGGAACCACCTTGTAGGTTTGTTACAGACACACCTAAAGGTCCTAAAGTGAAGTATTTATACTTTATTAA -AGGATTAAACAACCTAAATAGAGGTATGGTACTTGGTAGTTTAGCTGCCACAGTACGTCTACAAGCTGGTAATGCAACAG -AAGTGCCTGCCAATTCAACTGTATTATCTTTCTGTGCTTTTGCTGTAGATGCTGCTAAAGCTTACAAAGATTATCTAGCT -AGTGGGGGACAACCAATCACTAATTGTGTTAAGATGTTGTGTACACACACTGGTACTGGTCAGGCAATAACAGTTACACC -GGAAGCCAATATGGATCAAGAATCCTTTGGTGGTGCATCGTGTTGTCTGTACTGCCGTTGCCACATAGATCATCCAAATC -CTAAAGGATTTTGTGACTTAAAAGGTAAGTATGTACAAATACCTACAACTTGTGCTAATGACCCTGTGGGTTTTACACTT -AAAAACACAGTCTGTACCGTCTGCGGTATGTGGAAAGGTTATGGCTGTAGTTGTGATCAACTCCGCGAACCCATGCTTCA -GTCAGCTGATGCACAATCGTTTTTAAACGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCACTAG -TACTGATGTCGTATACAGGGCTTTTGACATCTACAATGATAAAGTAGCTGGTTTTGCTAAATTCCTAAAAACTAATTGTT -GTCGCTTCCAAGAAAAGGACGAAGATGACAATTTAATTGATTCTTACTTTGTAGTTAAGAGACACACTTTCTCTAACTAC -CAACATGAAGAAACAATTTATAATTTACTTAAGGATTGTCCAGCTGTTGCTAAACATGACTTCTTTAAGTTTAGAATAGA -CGGTGACATGGTACCACATATATCACGTCAACGTCTTACTAAATACACAATGGCAGACCTCGTCTATGCTTTAAGGCATT -TTGATGAAGGTAATTGTGACACATTAAAAGAAATACTTGTCACATACAATTGTTGTGATGATGATTATTTCAATAAAAAG -GACTGGTATGATTTTGTAGAAAACCCAGATATATTACGCGTATACGCCAACTTAGGTGAACGTGTACGCCAAGCTTTGTT -AAAAACAGTACAATTCTGTGATGCCATGCGAAATGCTGGTATTGTTGGTGTACTGACATTAGATAATCAAGATCTCAATG -GTAACTGGTATGATTTCGGTGATTTCATACAAACCACGCCAGGTAGTGGAGTTCCTGTTGTAGATTCTTATTATTCATTG -TTAATGCCTATATTAACCTTGACCAGGGCTTTAACTGCAGAGTCACATGTTGACACTGACTTAACAAAGCCTTACATTAA -GTGGGATTTGTTAAAATATGACTTCACGGAAGAGAGGTTAAAACTCTTTGACCGTTATTTTAAATATTGGGATCAGACAT -ACCACCCAAATTGTGTTAACTGTTTGGATGACAGATGCATTCTGCATTGTGCAAACTTTAATGTTTTATTCTCTACAGTG -TTCCCACCTACAAGTTTTGGACCACTAGTGAGAAAAATATTTGTTGATGGTGTTCCATTTGTAGTTTCAACTGGATACCA -CTTCAGAGAGCTAGGTGTTGTACATAATCAGGATGTAAACTTACATAGCTCTAGACTTAGTTTTAAGGAATTACTTGTGT -ATGCTGCTGACCCTGCTATGCACGCTGCTTCTGGTAATCTATTACTAGATAAACGCACTACGTGCTTTTCAGTAGCTGCA -CTTACTAACAATGTTGCTTTTCAAACTGTCAAACCCGGTAATTTTAACAAAGACTTCTATGACTTTGCTGTGTCTAAGGG -TTTCTTTAAGGAAGGAAGTTCTGTTGAATTAAAACACTTCTTCTTTGCTCAGGATGGTAATGCTGCTATCAGCGATTATG -ACTACTATCGTTATAATCTACCAACAATGTGTGATATCAGACAACTACTATTTGTAGTTGAAGTTGTTGATAAGTACTTT -GATTGTTACGATGGTGGCTGTATTAATGCTAACCAAGTCATCGTCAACAACCTAGACAAATCAGCTGGTTTTCCATTTAA -TAAATGGGGTAAGGCTAGACTTTATTATGATTCAATGAGTTATGAGGATCAAGATGCACTTTTCGCATATACAAAACGTA -ATGTCATCCCTACTATAACTCAAATGAATCTTAAGTATGCCATTAGTGCAAAGAATAGAGCTCGCACCGTAGCTGGTGTC -TCTATCTGTAGTACTATGACCAATAGACAGTTTCATCAAAAATTATTGAAATCAATAGCCGCCACTAGAGGAGCTACTGT -AGTAATTGGAACAAGCAAATTCTATGGTGGTTGGCACAACATGTTAAAAACTGTTTATAGTGATGTAGAAAACCCTCACC -TTATGGGTTGGGATTATCCTAAATGTGATAGAGCCATGCCTAACATGCTTAGAATTATGGCCTCACTTGTTCTTGCTCGC -AAACATACAACGTGTTGTAGCTTGTCACACCGTTTCTATAGATTAGCTAATGAGTGTGCTCAAGTATTGAGTGAAATGGT -CATGTGTGGCGGTTCACTATATGTTAAACCAGGTGGAACCTCATCAGGAGATGCCACAACTGCTTATGCTAATAGTGTTT -TTAACATTTGTCAAGCTGTCACGGCCAATGTTAATGCACTTTTATCTACTGATGGTAACAAAATTGCCGATAAGTATGTC -CGCAATTTACAACACAGACTTTATGAGTGTCTCTATAGAAATAGAGATGTTGACACAGACTTTGTGAATGAGTTTTACGC -ATATTTGCGTAAACATTTCTCAATGATGATACTCTCTGACGATGCTGTTGTGTGTTTCAATAGCACTTATGCATCTCAAG -GTCTAGTGGCTAGCATAAAGAACTTTAAGTCAGTTCTTTATTATCAAAACAATGTTTTTATGTCTGAAGCAAAATGTTGG -ACTGAGACTGACCTTACTAAAGGACCTCATGAATTTTGCTCTCAACATACAATGCTAGTTAAACAGGGTGATGATTATGT -GTACCTTCCTTACCCAGATCCATCAAGAATCCTAGGGGCCGGCTGTTTTGTAGATGATATCGTAAAAACAGATGGTACAC -TTATGATTGAACGGTTCGTGTCTTTAGCTATAGATGCTTACCCACTTACTAAACATCCTAATCAGGAGTATGCTGATGTC -TTTCATTTGTACTTACAATACATAAGAAAGCTACATGATGAGTTAACAGGACACATGTTAGACATGTATTCTGTTATGCT -TACTAATGATAACACTTCAAGGTATTGGGAACCTGAGTTTTATGAGGCTATGTACACACCGCATACAGTCTTACAGGCTG -TTGGGGCTTGTGTTCTTTGCAATTCACAGACTTCATTAAGATGTGGTGCTTGCATACGTAGACCATTCTTATGTTGTAAA -TGCTGTTACGACCATGTCATATCAACATCACATAAATTAGTCTTGTCTGTTAATCCGTATGTTTGCAATGCTCCAGGTTG -TGATGTCACAGATGTGACTCAACTTTACTTAGGAGGTATGAGCTATTATTGTAAATCACATAAACCACCCATTAGTTTTC -CATTGTGTGCTAATGGACAAGTTTTTGGTTTATATAAAAATACATGTGTTGGTAGCGATAATGTTACTGACTTTAATGCA -ATTGCAACATGTGACTGGACAAATGCTGGTGATTACATTTTAGCTAACACCTGTACTGAAAGACTCAAGCTTTTTGCAGC -AGAAACGCTCAAAGCTACTGAGGAGACATTTAAACTGTCTTATGGTATTGCTACTGTACGTGAAGTGCTGTCTGACAGAG -AATTACATCTTTCATGGGAAGTTGGTAAACCTAGACCACCACTTAACCGAAATTATGTCTTTACTGGTTATCGTGTAACT -AAAAACAGTAAAGTACAAATAGGAGAGTACACCTTTGAAAAAGGTGACTATGGTGATGCTGTTGTTTACCGAGGTACAAC -AACTTACAAATTAAATGTTGGTGATTATTTTGTGCTGACATCACATACAGTAATGCCATTAAGTGCACCTACACTAGTGC -CACAAGAGCACTATGTTAGAATTACTGGCTTATACCCAACACTCAATATCTCAGATGAGTTTTCTAGCAATGTTGCAAAT -TATCAAAAGGTTGGTATGCAAAAGTATTCTACACTCCAGGGACCACCTGGTACTGGTAAGAGTCATTTTGCTATTGGCCT -AGCTCTCTACTACCCTTCTGCTCGCATAGTGTATACAGCTTGCTCTCATGCCGCTGTTGATGCACTATGTGAGAAGGCAT -TAAAATATTTGCCTATAGATAAATGTAGTAGAATTATACCTGCACGTGCTCGTGTAGAGTGTTTTGATAAATTCAAAGTG -AATTCAACATTAGAACAGTATGTCTTTTGTACTGTAAATGCATTGCCTGAGACGACAGCAGATATAGTTGTCTTTGATGA -AATTTCAATGGCCACAAATTATGATTTGAGTGTTGTCAATGCCAGATTACGTGCTAAGCACTATGTGTACATTGGCGACC -CTGCTCAATTACCTGCACCACGCACATTGCTAACTAAGGGCACACTAGAACCAGAATATTTCAATTCAGTGTGTAGACTT -ATGAAAACTATAGGTCCAGACATGTTCCTCGGAACTTGTCGGCGTTGTCCTGCTGAAATTGTTGACACTGTGAGTGCTTT -GGTTTATGATAATAAGCTTAAAGCACATAAAGACAAATCAGCTCAATGCTTTAAAATGTTTTATAAGGGTGTTATCACGC -ATGATGTTTCATCTGCAATTAACAGGCCACAAATAGGCGTGGTAAGAGAATTCCTTACACGTAACCCTGCTTGGAGAAAA -GCTGTCTTTATTTCACCTTATAATTCACAGAATGCTGTAGCCTCAAAGATTTTGGGACTACCAACTCAAACTGTTGATTC -ATCACAGGGCTCAGAATATGACTATGTCATATTCACTCAAACCACTGAAACAGCTCACTCTTGTAATGTAAACAGATTTA -ATGTTGCTATTACCAGAGCAAAAGTAGGCATACTTTGCATAATGTCTGATAGAGACCTTTATGACAAGTTGCAATTTACA -AGTCTTGAAATTCCACGTAGGAATGTGGCAACTTTACAAGCTGAAAATGTAACAGGACTCTTTAAAGATTGTAGTAAGGT -AATCACTGGGTTACATCCTACACAGGCACCTACACACCTCAGTGTTGACACTAAATTCAAAACTGAAGGTTTATGTGTTG -ACATACCTGGCATACCTAAGGACATGACCTATAGAAGACTCATCTCTATGATGGGTTTTAAAATGAATTATCAAGTTAAT -GGTTACCCTAACATGTTTATCACCCGCGAAGAAGCTATAAGACATGTACGTGCATGGATTGGCTTCGATGTCGAGGGGTG -TCATGCTACTAGAGAAGCTGTTGGTACCAATTTACCTTTACAGCTAGGTTTTTCTACAGGTGTTAACCTAGTTGCTGTAC -CTACAGGTTATGTTGATACACCTAATAATACAGATTTTTCCAGAGTTAGTGCTAAACCACCGCCTGGAGATCAATTTAAA -CACCTCATACCACTTATGTACAAAGGACTTCCTTGGAATGTAGTGCGTATAAAGATTGTACAAATGTTAAGTGACACACT -TAAAAATCTCTCTGACAGAGTCGTATTTGTCTTATGGGCACATGGCTTTGAGTTGACATCTATGAAGTATTTTGTGAAAA -TAGGACCTGAGCGCACCTGTTGTCTATGTGATAGACGTGCCACATGCTTTTCCACTGCTTCAGACACTTATGCCTGTTGG -CATCATTCTATTGGATTTGATTACGTCTATAATCCGTTTATGATTGATGTTCAACAATGGGGTTTTACAGGTAACCTACA -AAGCAACCATGATCTGTATTGTCAAGTCCATGGTAATGCACATGTAGCTAGTTGTGATGCAATCATGACTAGGTGTCTAG -CTGTCCACGAGTGCTTTGTTAAGCGTGTTGACTGGACTATTGAATATCCTATAATTGGTGATGAACTGAAGATTAATGCG -GCTTGTAGAAAGGTTCAACACATGGTTGTTAAAGCTGCATTATTAGCAGACAAATTCCCAGTTCTTCACGACATTGGTAA -CCCTAAAGCTATTAAGTGTGTACCTCAAGCTGATGTAGAATGGAAGTTCTATGATGCACAGCCTTGTAGTGACAAAGCTT -ATAAAATAGAAGAATTATTCTATTCTTATGCCACACATTCTGACAAATTCACAGATGGTGTATGCCTATTTTGGAATTGC -AATGTCGATAGATATCCTGCTAATTCCATTGTTTGTAGATTTGACACTAGAGTGCTATCTAACCTTAACTTGCCTGGTTG -TGATGGTGGCAGTTTGTATGTAAATAAACATGCATTCCACACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAAC -AATTACCATTTTTCTATTACTCTGACAGTCCATGTGAGTCTCATGGAAAACAAGTAGTGTCAGATATAGATTATGTACCA -CTAAAGTCTGCTACGTGTATAACACGTTGCAATTTAGGTGGTGCTGTCTGTAGACATCATGCTAATGAGTACAGATTGTA -TCTCGATGCTTATAACATGATGATCTCAGCTGGCTTTAGCTTGTGGGTTTACAAACAATTTGATACTTATAACCTCTGGA -ACACTTTTACAAGACTTCAGAGTTTAGAAAATGTGGCTTTTAATGTTGTAAATAAGGGACACTTTGATGGACAACAGGGT -GAAGTACCAGTTTCTATCATTAATAACACTGTTTACACAAAAGTTGATGGTGTTGATGTAGAATTGTTTGAAAATAAAAC -AACATTACCTGTTAATGTAGCATTTGAGCTTTGGGCTAAGCGCAACATTAAACCAGTACCAGAGGTGAAAATACTCAATA -ATTTGGGTGTGGACATTGCTGCTAATACTGTGATCTGGGACTACAAAAGAGATGCTCCAGCACATATATCTACTATTGGT -GTTTGTTCTATGACTGACATAGCCAAGAAACCAACTGAAACGATTTGTGCACCACTCACTGTCTTTTTTGATGGTAGAGT -TGATGGTCAAGTAGACTTATTTAGAAATGCCCGTAATGGTGTTCTTATTACAGAAGGTAGTGTTAAAGGTTTACAACCAT -CTGTAGGTCCCAAACAAGCTAGTCTTAATGGAGTCACATTAATTGGAGAAGCCGTAAAAACACAGTTCAATTATTATAAG -AAAGTTGATGGTGTTGTCCAACAATTACCTGAAACTTACTTTACTCAGAGTAGAAATTTACAAGAATTTAAACCCAGGAG -TCAAATGGAAATTGATTTCTTAGAATTAGCTATGGATGAATTCATTGAACGGTATAAATTAGAAGGCTATGCCTTCGAAC -ATATCGTTTATGGAGATTTTAGTCATAGTCAGTTAGGTGGTTTACATCTACTGATTGGACTAGCTAAACGTTTTAAGGAA -TCACCTTTTGAATTAGAAGATTTTATTCCTATGGACAGTACAGTTAAAAACTATTTCATAACAGATGCGCAAACAGGTTC -ATCTAAGTGTGTGTGTTCTGTTATTGATTTATTACTTGATGATTTTGTTGAAATAATAAAATCCCAAGATTTATCTGTAG -TTTCTAAGGTTGTCAAAGTGACTATTGACTATACAGAAATTTCATTTATGCTTTGGTGTAAAGATGGCCATGTAGAAACA -TTTTACCCAAAATTACAATCTAGTCAAGCGTGGCAACCGGGTGTTGCTATGCCTAATCTTTACAAAATGCAAAGAATGCT -ATTAGAAAAGTGTGACCTTCAAAATTATGGTGATAGTGCAACATTACCTAAAGGCATAATGATGAATGTCGCAAAATATA -CTCAACTGTGTCAATATTTAAACACATTAACATTAGCTGTACCCTATAATATGAGAGTTATACATTTTGGTGCTGGTTCT -GATAAAGGAGTTGCACCAGGTACAGCTGTTTTAAGACAGTGGTTGCCTACGGGTACGCTGCTTGTCGATTCAGATCTTAA -TGACTTTGTCTCTGATGCAGATTCAACTTTGATTGGTGATTGTGCAACTGTACATACAGCTAATAAATGGGATCTCATTA -TTAGTGATATGTACGACCCTAAGACTAAAAATGTTACAAAAGAAAATGACTCTAAAGAGGGTTTTTTCACTTACATTTGT -GGGTTTATACAACAAAAGCTAGCTCTTGGAGGTTCCGTGGCTATAAAGATAACAGAACATTCTTGGAATGCTGATCTTTA -TAAGCTCATGGGACACTTCGCATGGTGGACAGCCTTTGTTACTAATGTGAATGCGTCATCATCTGAAGCATTTTTAATTG -GATGTAATTATCTTGGCAAACCACGCGAACAAATAGATGGTTATGTCATGCATGCAAATTACATATTTTGGAGGAATACA -AATCCAATTCAGTTGTCTTCCTATTCTTTATTTGACATGAGTAAATTTCCCCTTAAATTAAGGGGTACTGCTGTTATGTC -TTTAAAAGAAGGTCAAATCAATGATATGATTTTATCTCTTCTTAGTAAAGGTAGACTTATAATTAGAGAAAACAACAGAG -TTGTTATTTCTAGTGATGTTCTTGTTAACAACTAAACGAACAATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAG -TCAGTGTGTTAATCTTACAACCAGAACTCAATTACCCCCTGCATACACTAATTCTTTCACACGTGGTGTTTATTACCCTG -ACAAAGTTTTCAGATCCTCAGTTTTACATTCAACTCAGGACTTGTTCTTACCTTTCTTTTCCAATGTTACTTGGTTCCAT -GCTATACATGTCTCTGGGACCAATGGTACTAAGAGGTTTGATAACCCTGTCCTACCATTTAATGATGGTGTTTATTTTGC -TTCCACTGAGAAGTCTAACATAATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAAGACCCAGTCCCTACTTATTG -TTAATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATTTCAATTTTGTAATGATCCATTTTTGGGTGTTTATTACCAC -AAAAACAACAAAAGTTGGATGGAAAGTGAGTTCAGAGTTTATTCTAGTGCGAATAATTGCACTTTTGAATATGTCTCTCA -GCCTTTTCTTATGGACCTTGAAGGAAAACAGGGTAATTTCAAAAATCTTAGGGAATTTGTGTTTAAGAATATTGATGGTT -ATTTTAAAATATATTCTAAGCACACGCCTATTAATTTAGTGCGTGATCTCCCTCAGGGTTTTTCGGCTTTAGAACCATTG -GTAGATTTGCCAATAGGTATTAACATCACTAGGTTTCAAACTTTACTTGCTTTACATAGAAGTTATTTGACTCCTGGTGA -TTCTTCTTCAGGTTGGACAGCTGGTGCTGCAGCTTATTATGTGGGTTATCTTCAACCTAGGACTTTTCTATTAAAATATA -ATGAAAATGGAACCATTACAGATGCTGTAGACTGTGCACTTGACCCTCTCTCAGAAACAAAGTGTACGTTGAAATCCTTC -ACTGTAGAAAAAGGAATCTATCAAACTTCTAACTTTAGAGTCCAACCAACAGAATCTATTGTTAGATTTCCTAATATTAC -AAACTTGTGCCCTTTTGGTGAAGTTTTTAACGCCACCAGATTTGCATCTGTTTATGCTTGGAACAGGAAGAGAATCAGCA -ACTGTGTTGCTGATTATTCTGTCCTATATAATTCCGCATCATTTTCCACTTTTAAGTGTTATGGAGTGTCTCCTACTAAA -TTAAATGATCTCTGCTTTACTAATGTCTATGCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGG -GCAAACTGGAAAGATTGCTGATTATAATTATAAATTACCAGATGATTTTACAGGCTGCGTTATAGCTTGGAATTCTAACA -ATCTTGATTCTAAGGTTGGTGGTAATTATAATTACCTGTATAGATTGTTTAGGAAGTCTAATCTCAAACCTTTTGAGAGA -GATATTTCAACTGAAATCTATCAGGCCGGTAGCACACCTTGTAATGGTGTTGAAGGTTTTAATTGTTACTTTCCTTTACA -ATCATATGGTTTCCAACCCACTAATGGTGTTGGTTACCAACCATACAGAGTAGTAGTACTTTCTTTTGAACTTCTACATG -CACCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTTGGTTAAAAACAAATGTGTCAATTTCAACTTCAATGGTTTA -ACAGGCACAGGTGTTCTTACTGAGTCTAACAAAAAGTTTCTGCCTTTCCAACAATTTGGCAGAGACATTGCTGACACTAC -TGATGCTGTCCGTGATCCACAGACACTTGAGATTCTTGACATTACACCATGTTCTTTTGGTGGTGTCAGTGTTATAACAC -CAGGAACAAATACTTCTAACCAGGTTGCTGTTCTTTATCAGGATGTTAACTGCACAGAAGTCCCTGTTGCTATTCATGCA -GATCAACTTACTCCTACTTGGCGTGTTTATTCTACAGGTTCTAATGTTTTTCAAACACGTGCAGGCTGTTTAATAGGGGC -TGAACATGTCAACAACTCATATGAGTGTGACATACCCATTGGTGCAGGTATATGCGCTAGTTATCAGACTCAGACTAATT -CTCCTCGGCGGGCACGTAGTGTAGCTAGTCAATCCATCATTGCCTACACTATGTCACTTGGTGCAGAAAATTCAGTTGCT -TACTCTAATAACTCTATTGCCATACCCACAAATTTTACTATTAGTGTTACCACAGAAATTCTACCAGTGTCTATGACCAA -GACATCAGTAGATTGTACAATGTACATTTGTGGTGATTCAACTGAATGCAGCAATCTTTTGTTGCAATATGGCAGTTTTT -GTACACAATTAAACCGTGCTTTAACTGGAATAGCTGTTGAACAAGACAAAAACACCCAAGAAGTTTTTGCACAAGTCAAA -CAAATTTACAAAACACCACCAATTAAAGATTTTGGTGGTTTTAATTTTTCACAAATATTACCAGATCCATCAAAACCAAG -CAAGAGGTCATTTATTGAAGATCTACTTTTCAACAAAGTGACACTTGCAGATGCTGGCTTCATCAAACAATATGGTGATT -GCCTTGGTGATATTGCTGCTAGAGACCTCATTTGTGCACAAAAGTTTAACGGCCTTACTGTTTTGCCACCTTTGCTCACA -GATGAAATGATTGCTCAATACACTTCTGCACTGTTAGCGGGTACAATCACTTCTGGTTGGACCTTTGGTGCAGGTGCTGC -ATTACAAATACCATTTGCTATGCAAATGGCTTATAGGTTTAATGGTATTGGAGTTACACAGAATGTTCTCTATGAGAACC -AAAAATTGATTGCCAACCAATTTAATAGTGCTATTGGCAAAATTCAAGACTCACTTTCTTCCACAGCAAGTGCACTTGGA -AAACTTCAAGATGTGGTCAACCAAAATGCACAAGCTTTAAACACGCTTGTTAAACAACTTAGCTCCAATTTTGGTGCAAT -TTCAAGTGTTTTAAATGATATCCTTTCACGTCTTGACAAAGTTGAGGCTGAAGTGCAAATTGATAGGTTGATCACAGGCA -GACTTCAAAGTTTGCAGACATATGTGACTCAACAATTAATTAGAGCTGCAGAAATCAGAGCTTCTGCTAATCTTGCTGCT -ACTAAAATGTCAGAGTGTGTACTTGGACAATCAAAAAGAGTTGATTTTTGTGGAAAGGGCTATCATCTTATGTCCTTCCC -TCAGTCAGCACCTCATGGTGTAGTCTTCTTGCATGTGACTTATGTCCCTGCACAAGAAAAGAACTTCACAACTGCTCCTG -CCATTTGTCATGATGGAAAAGCACACTTTCCTCGTGAAGGTGTCTTTGTTTCAAATGGCACACACTGGTTTGTAACACAA -AGGAATTTTTATGAACCACAAATCATTACTACAGACAACACATTTGTGTCTGGTAACTGTGATGTTGTAATAGGAATTGT -CAACAACACAGTTTATGATCCTTTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGATAAATATTTTAAGAATCATA -CATCACCAGATGTTGATTTAGGTGACATCTCTGGCATTAATGCTTCAGTTGTAAACATTCAAAAAGAAATTGACCGCCTC -AATGAGGTTGCCAAGAATTTAAATGAATCTCTCATCGATCTCCAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCC -ATGGTACATTTGGCTAGGTTTTATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGCTTTGCTGTATGACCAGTT -GCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTGCTGCAAATTTGATGAAGACGACTCTGAGCCAGTGCTCAAA -GGAGTCAAATTACATTACACATAAACGAACTTATGGATTTGTTTATGAGAATCTTCACAATTGGAACTGTAACTTTGAAG -CAAGGTGAAATCAAGGATGCTACTCCTTCAGATTTTGTTCGCGCTACTGCAACGATACCGATACAAGCCTCACTCCCTTT -CGGATGGCTTATTGTTGGCGTTGCACTTCTTGCTGTTTTTCAGAGCGCTTCCAAAATCATAACCCTCAAAAAGAGATGGC -AACTAGCACTCTCCAAGGGTGTTCACTTTGTTTGCAACTTGCTGTTGTTGTTTGTAACAGTTTACTCACACCTTTTGCTC -GTTGCTGCTGGCCTTGAAGCCCCTTTTCTCTATCTTTATGCTTTAGTCTACTTCTTGCAGAGTATAAACTTTGTAAGAAT -AATAATGAGGCTTTGGCTTTGCTGGAAATGCCGTTCCAAAAACCCATTACTTTATGATGCCAACTATTTTCTTTGCTGGC -ATACTAATTGTTACGACTATTGTATACCTTACAATAGTGTAACTTCTTCAATTGTCATTACTTCAGGTGATGGCACAACA -AGTCCTATTTCTGAACATGACTACCAGATTGGTGGTTATACTGAAAAATGGGAATCTGGAGTAAAAGACTGTGTTGTATT -ACACAGTTACTTCACTTCAGACTATTACCAGCTGTACTCAACTCAATTGAGTACAGACACTGGTGTTGAACATGTTACCT -TCTTCATCTACAATAAAATTGTTGATGAGCCTGAAGAACATGTCCAAATTCACACAATCGACGGTTCATCCGGAGTTGTT -AATCCAGTAATGGAACCAATTTATGATGAACCGACGACGACTACTAGCGTGCCTTTGTAAGCACAAGCTGATGAGTACGA -ACTTATGTACTCATTCGTTTCGGAAGAGACAGGTACGTTAATAGTTAATAGCGTACTTCTTTTTCTTGCTTTCGTGGTAT -TCTTGCTAGTTACACTAGCCATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTTGTA -AAACCTTCTTTTTACGTTTACTCTCGTGTTAAAAATCTGAATTCTTCTAGAGTTCCTGATCTTCTGGTCTAAACGAACTA -AATATTATATTAGTTTTTCTGTTTGGAACTTTAATTTTAGCCATGGCAGATTCCAACGGTACTATTACCGTTGAAGAGCT -TAAAAAGCTCCTTGAACAATGGAACCTAGTAATAGGTTTCCTATTCCTTACATGGATTTGTCTTCTACAATTTGCCTATG -CCAACAGGAATAGGTTTTTGTATATAATTAAGTTAATTTTCCTCTGGCTGTTATGGCCAGTAACTTTAGCTTGTTTTGTG -CTTGCTGCTGTTTACAGAATAAATTGGATCACCGGTGGAATTGCTATCGCAATGGCTTGTCTTGTAGGCTTGATGTGGCT -CAGCTACTTCATTGCTTCTTTCAGACTGTTTGCGCGTACGCGTTCCATGTGGTCATTCAATCCAGAAACTAACATTCTTC -TCAACGTGCCACTCCATGGCACTATTCTGACCAGACCGCTTCTAGAAAGTGAACTCGTAATCGGAGCTGTGATCCTTCGT -GGACATCTTCGTATTGCTGGACACCATCTAGGACGCTGTGACATCAAGGACCTGCCTAAAGAAATCACTGTTGCTACATC -ACGAACGCTTTCTTATTACAAATTGGGAGCTTCGCAGCGTGTAGCAGGTGACTCAGGTTTTGCTGCATACAGTCGCTACA -GGATTGGCAACTATAAATTAAACACAGACCATTCCAGTAGCAGTGACAATATTGCTTTGCTTGTACAGTAAGTGACAACA -GATGTTTCATCTCGTTGACTTTCAGGTTACTATAGCAGAGATATTACTAATTATTATGAGGACTTTTAAAGTTTCCATTT -GGAATCTTGATTACATCATAAACCTCATAATTAAAAATTTATCTAAGTCACTAACTGAGAATAAATATTCTCAATTAGAT -GAAGAGCAACCAATGGAGATTGATTAAACGAACATGAAAATTATTCTTTTCTTGGCACTGATAACACTCGCTACTTGTGA -GCTTTATCACTACCAAGAGTGTGTTAGAGGTACAACAGTACTTTTAAAAGAACCTTGCTCTTCTGGAACATACGAGGGCA -ATTCACCATTTCATCCTCTAGCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGAC -GGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACT -TTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGAT -TGAACTTTCATTAATTGACTTCTATTTGTGCTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTATCTTTT -GGTTCTCACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATC -ATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCC -GTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGG -ATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAAT -TGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCATGACGTTCGTGT -TGTTTTAGATTTCATCTAAACGAACAAACTAAAATGTCTGATAATGGACCCCAAAATCAGCGAAATGCACCCCGCATTAC -GTTTGGTGGACCCTCAGATTCAACTGGCAGTAACCAGAATGGAGAACGCAGTGGGGCGCGATCAAAACAACGTCGGCCCC -AAGGTTTACCCAATAATACTGCGTCTTGGTTCACCGCTCTCACTCAACATGGCAAGGAAGACCTTAAATTCCCTCGAGGA -CAAGGCGTTCCAATTAACACCAATAGCAGTCCAGATGACCAAATTGGCTACTACCGAAGAGCTACCAGACGAATTCGTGG -TGGTGACGGTAAAATGAAAGATCTCAGTCCAAGATGGTATTTCTACTACCTAGGAACTGGGCCAGAAGCTGGACTTCCCT -ATGGTGCTAACAAAGACGGCATCATATGGGTTGCAACTGAGGGAGCCTTGAATACACCAAAAGATCACATTGGCACCCGC -AATCCTGCTAACAATGCTGCAATCGTGCTACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAAGGGAG -CAGAGGCGGCAGTCAAGCCTCTTCTCGTTCCTCATCACGTAGTCGCAACAGTTCAAGAAATTCAACTCCAGGCAGCAGTA -GGGGAACTTCTCCTGCTAGAATGGCTGGCAATGGCGGTGATGCTGCTCTTGCTTTGCTGCTGCTTGACAGATTGAACCAG -CTTGAGAGCAAAATGTCTGGTAAAGGCCAACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCTTCTAA -GAAGCCTCGGCAAAAACGTACTGCCACTAAAGCATACAATGTAACACAAGCTTTCGGCAGACGTGGTCCAGAACAAACCC -AAGGAAATTTTGGGGACCAGGAACTAATCAGACAAGGAACTGATTACAAACATTGGCCGCAAATTGCACAATTTGCCCCC -AGCGCTTCAGCGTTCTTCGGAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGC -CATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCATATTGACGCATACAAAACAT -TCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGCTGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAG -CAAACTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTC -AACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATA -GTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCT -TTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGT -ACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCAT -GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAA diff --git a/example_input/Human/GRCh38_primary.ndb b/example_input/Human/GRCh38_primary.ndb deleted file mode 100644 index cff5b8c..0000000 Binary files a/example_input/Human/GRCh38_primary.ndb and /dev/null differ diff --git a/example_input/Human/GRCh38_primary.nhd b/example_input/Human/GRCh38_primary.nhd deleted file mode 100644 index b4aadd2..0000000 --- a/example_input/Human/GRCh38_primary.nhd +++ /dev/null @@ -1,24 +0,0 @@ -104789689111 -14145790978 -1558428993 -16106063146 -21455998025 -232855390522 -234334558815 -24661371201 -28707781149 -28807551490 -29494273684 -30530968942 -318089438813 -319003574210 -333316998312 -342313516721 -344769092920 -369775027918 -398731851117 -4011350807 -54402789319 -65263827916 -79969700623 -81277206814 diff --git a/example_input/Human/GRCh38_primary.nhi b/example_input/Human/GRCh38_primary.nhi deleted file mode 100644 index 1ac7cc6..0000000 Binary files a/example_input/Human/GRCh38_primary.nhi and /dev/null differ diff --git a/example_input/Human/GRCh38_primary.nhr b/example_input/Human/GRCh38_primary.nhr deleted file mode 100644 index f230b23..0000000 Binary files a/example_input/Human/GRCh38_primary.nhr and /dev/null differ diff --git a/example_input/Human/GRCh38_primary.nin b/example_input/Human/GRCh38_primary.nin deleted file mode 100644 index 8daf683..0000000 Binary files a/example_input/Human/GRCh38_primary.nin and /dev/null differ diff --git a/example_input/Human/GRCh38_primary.nog b/example_input/Human/GRCh38_primary.nog deleted file mode 100644 index 4d69769..0000000 Binary files a/example_input/Human/GRCh38_primary.nog and /dev/null differ diff --git a/example_input/Human/GRCh38_primary.nos b/example_input/Human/GRCh38_primary.nos deleted file mode 100644 index 81a25ba..0000000 Binary files a/example_input/Human/GRCh38_primary.nos and /dev/null differ diff --git a/example_input/Human/GRCh38_primary.not b/example_input/Human/GRCh38_primary.not deleted file mode 100644 index 686aa74..0000000 Binary files a/example_input/Human/GRCh38_primary.not and /dev/null differ diff --git a/example_input/Human/GRCh38_primary.nsq b/example_input/Human/GRCh38_primary.nsq deleted file mode 100644 index fa21f6b..0000000 --- a/example_input/Human/GRCh38_primary.nsq +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:1ef8012aeefad53f990c95ed4f6078d61e781d5e67bffd7fb56944b614c7da85 -size 772368785 diff --git a/example_input/Human/GRCh38_primary.ntf b/example_input/Human/GRCh38_primary.ntf deleted file mode 100644 index 80b0d84..0000000 Binary files a/example_input/Human/GRCh38_primary.ntf and /dev/null differ diff --git a/example_input/Human/GRCh38_primary.nto b/example_input/Human/GRCh38_primary.nto deleted file mode 100644 index 501ee08..0000000 Binary files a/example_input/Human/GRCh38_primary.nto and /dev/null differ diff --git a/example_input/Human/makeblastdb.out b/example_input/Human/makeblastdb.out deleted file mode 100644 index 8f02830..0000000 --- a/example_input/Human/makeblastdb.out +++ /dev/null @@ -1,11 +0,0 @@ - - -Building a new DB, current time: 08/27/2020 12:06:42 -New DB name: /Users/xiangjiangwang/Documents/BLAST_Database/GRCh38_primary -New DB title: GRCh38_primary -Sequence type: Nucleotide -Keep MBits: T -Maximum file size: 4000000000B -Adding sequences from FASTA; added 24 sequences in 27.6942 seconds. - - diff --git a/example_input/Human/makeblastdb.out.perf b/example_input/Human/makeblastdb.out.perf deleted file mode 100644 index e69de29..0000000 diff --git a/example_input/delta_omicron_loc.csv b/example_input/delta_omicron_loc.csv deleted file mode 100644 index 6bc5c1e..0000000 --- a/example_input/delta_omicron_loc.csv +++ /dev/null @@ -1,398 +0,0 @@ -START,STOP,FREQ,REF,ALT,VARIANT -14408,14408,0.999135637,C,T,Omicron -23403,23403,0.998636721,A,G,Omicron -23525,23525,0.998573165,C,T,Omicron -23599,23599,0.998178323,T,G,Omicron -25584,25584,0.998087755,C,T,Omicron -25469,25469,0.997506447,C,T,Delta -3037,3037,0.997495889,C,T,Omicron -23604,23604,0.99742921,C,G,Delta -26767,26767,0.997221729,T,C,Delta -27259,27259,0.996676015,A,C,Omicron -10029,10029,0.996351878,C,T,Omicron -28881,28881,0.99595741,G,T,Delta -24469,24469,0.995679772,T,A,Omicron -26270,26270,0.994603291,C,T,Omicron -21618,21618,0.994020925,C,G,Delta -16466,16466,0.993793,C,T,Delta -28883,28883,0.992798297,G,C,Omicron -28882,28882,0.99247416,G,A,Omicron -24424,24424,0.992394715,A,T,Omicron -27807,27807,0.992289848,C,T,Omicron -29402,29402,0.989515417,G,T,Delta -23948,23948,0.989355144,G,T,Omicron -10449,10449,0.988196039,C,A,Omicron -22995,22995,0.987830331,C,A,Delta -22917,22917,0.986265898,T,G,Delta -15451,15451,0.984527806,G,A,Delta -25000,25000,0.983090099,C,T,Omicron -28271,28271,0.980818762,A,T,Omicron -26709,26709,0.980682911,G,A,Omicron -28311,28311,0.980224512,C,T,Omicron -28461,28461,0.977992421,A,G,Delta -241,241,0.977423995,C,T,Delta -11288,11288,0.977192885,T,-,Omicron -11289,11289,0.97642465,C,-,Omicron -11290,11290,0.975831989,T,-,Omicron -27752,27752,0.974986982,C,T,Delta -11291,11291,0.97491837,G,-,Omicron -28249,28249,0.969813851,A,-,Delta -28250,28250,0.969386017,T,-,Delta -28251,28251,0.969115686,T,-,Delta -28248,28248,0.968724199,G,-,Delta -210,210,0.968538173,G,T,Delta -28252,28252,0.968097466,T,-,Delta -28253,28253,0.967872822,C,-,Delta -18163,18163,0.967502165,A,G,Omicron -28365,28365,0.963601408,A,-,Omicron -28367,28367,0.963563274,C,-,Omicron -28366,28366,0.963556918,A,-,Omicron -28368,28368,0.963425834,G,-,Omicron -28369,28369,0.963406767,C,-,Omicron -28363,28363,0.963377372,A,-,Omicron -28364,28364,0.963274888,G,-,Omicron -24410,24410,0.957709808,G,A,Delta -26577,26577,0.957186211,C,G,Omicron -27638,27638,0.956583557,T,C,Delta -28370,28370,0.955788771,A,-,Omicron -28362,28362,0.952818317,G,-,Omicron -22029,22029,0.943612237,A,-,Delta -22031,22031,0.943338372,T,-,Delta -22032,22032,0.943236399,T,-,Delta -22033,22033,0.943205352,C,-,Delta -22028,22028,0.943054159,G,-,Delta -22030,22030,0.942984999,G,-,Delta -22034,22034,0.942627587,A,G,Delta -22578,22578,0.941163713,G,A,Omicron -29742,29742,0.926820194,G,T,Delta -5386,5386,0.926150167,T,G,Omicron -11537,11537,0.926094556,A,G,Omicron -13195,13195,0.925425627,T,C,Omicron -23202,23202,0.924216472,C,A,Omicron -15240,15240,0.923654,C,T,Omicron -8393,8393,0.923253597,G,A,Omicron -24130,24130,0.922473445,C,A,Omicron -24503,24503,0.922332033,C,T,Omicron -21762,21762,0.918817379,C,T,Omicron -23040,23040,0.918799901,A,G,Omicron -2832,2832,0.914021275,A,G,Omicron -11287,11287,0.913724945,G,-,Omicron -22992,22992,0.913107656,G,A,Omicron -6513,6513,0.912085197,G,-,Omicron -6514,6514,0.912018463,T,-,Omicron -6515,6515,0.911977946,T,-,Omicron -23013,23013,0.91129154,A,C,Omicron -11286,11286,0.91015468,T,-,Omicron -11285,11285,0.910087946,T,-,Omicron -11284,11284,0.909982284,T,-,Omicron -11283,11283,0.909932233,G,-,Omicron -21767,21767,0.907065058,C,-,Omicron -21768,21768,0.906860089,A,-,Omicron -21769,21769,0.906850556,T,-,Omicron -23063,23063,0.906560581,A,T,Omicron -21770,21770,0.906493053,G,-,Omicron -21771,21771,0.906341312,T,-,Omicron -23075,23075,0.906029887,T,C,Omicron -8986,8986,0.904873193,C,T,Delta -21846,21846,0.904673758,C,T,Omicron -21766,21766,0.90446879,A,C,Omicron -21772,21772,0.904459257,C,-,Omicron -19220,19220,0.90228322,C,T,Delta -23055,23055,0.902163292,A,G,Omicron -11201,11201,0.901904858,A,G,Delta -9053,9053,0.901338199,G,T,Delta -28916,28916,0.898521815,G,T,Delta -23854,23854,0.897814464,C,A,Omicron -4181,4181,0.897759538,G,T,Delta -11332,11332,0.896777413,A,G,Delta -21989,21989,0.892045951,G,-,Omicron -22686,22686,0.891952206,C,T,Omicron -21990,21990,0.891755182,T,-,Omicron -21991,21991,0.891701159,T,-,Omicron -21992,21992,0.891684476,T,-,Omicron -21993,21993,0.891671764,A,-,Omicron -22679,22679,0.891659053,T,C,Omicron -21994,21994,0.891645547,T,-,Omicron -21988,21988,0.891585964,T,-,Omicron -21987,21987,0.89156928,G,-,Omicron -21986,21986,0.890937691,G,-,Omicron -27874,27874,0.890373786,C,T,Delta -21995,21995,0.890078889,T,G,Omicron -7124,7124,0.88973519,C,T,Delta -6402,6402,0.889330073,C,T,Delta -22674,22674,0.888154727,C,T,Omicron -26530,26530,0.870540148,A,G,Omicron -23048,23048,0.847217433,G,A,Omicron -22195,22195,0.840519412,T,-,Omicron -22194,22194,0.840518618,A,-,Omicron -22193,22193,0.838811342,A,-,Omicron -22196,22196,0.836815679,T,A,Omicron -22673,22673,0.816138489,T,C,Omicron -22882,22882,0.672602544,T,G,Omicron -22813,22813,0.642844772,G,T,Omicron -22898,22898,0.61663661,G,A,Omicron -22599,22599,0.362618671,G,A,Omicron -2470,2470,0.348620435,C,T,Omicron -7851,7851,0.250502232,C,T,Delta -5924,5924,0.146894092,G,A,Omicron -21595,21595,0.14025486,C,T,Omicron -17040,17040,0.119850564,T,C,Delta -23664,23664,0.106292851,C,T,Omicron -22227,22227,0.103079471,C,T,Delta -25708,25708,0.101801022,C,T,Omicron -10135,10135,0.101352157,T,C,Omicron -29301,29301,0.100855624,A,G,Omicron -3241,3241,0.09528493,C,T,Omicron -5184,5184,0.092683483,C,T,Delta -9891,9891,0.088031577,C,T,Delta -11418,11418,0.087212509,T,C,Delta -29632,29632,0.085800767,C,T,Omicron -27384,27384,0.084516934,T,C,Omicron -27382,27382,0.074139013,G,C,Omicron -27383,27383,0.073909417,A,T,Omicron -12880,12880,0.073835533,C,T,Omicron -26060,26060,0.073314372,C,T,Omicron -17410,17410,0.073287361,C,T,Omicron -15714,15714,0.072892519,C,T,Omicron -4184,4184,0.072693906,G,A,Omicron -10447,10447,0.072622405,G,A,Omicron -26858,26858,0.072572355,C,T,Omicron -4321,4321,0.072479404,C,T,Omicron -9344,9344,0.072454776,C,T,Omicron -9534,9534,0.072428559,C,T,Omicron -29510,29510,0.072419026,A,C,Omicron -670,670,0.07226808,T,G,Omicron -2790,2790,0.072203729,C,T,Omicron -22200,22200,0.072117928,T,G,Omicron -22775,22775,0.071904221,G,A,Omicron -17236,17236,0.071889489,A,G,Delta -9424,9424,0.071651585,A,G,Omicron -9866,9866,0.071363199,C,T,Omicron -15952,15952,0.071033316,C,A,Delta -22688,22688,0.070939757,A,G,Omicron -22786,22786,0.070810261,A,C,Omicron -28299,28299,0.070383867,A,T,Delta -11514,11514,0.070341967,C,T,Delta -19955,19955,0.069790185,C,T,Omicron -20055,20055,0.068600097,A,G,Omicron -24208,24208,0.068508969,C,T,Delta -11292,11292,0.066824498,G,-,Omicron -11293,11293,0.066678319,T,-,Omicron -11294,11294,0.066674346,T,-,Omicron -11295,11295,0.066562329,T,-,Omicron -11296,11296,0.066554384,T,-,Omicron -21635,21635,0.066360538,C,-,Omicron -21641,21641,0.066316049,G,T,Omicron -21636,21636,0.066313665,C,-,Omicron -21637,21637,0.066313665,C,-,Omicron -21633,21633,0.066299365,T,-,Omicron -21634,21634,0.066298571,A,-,Omicron -21632,21632,0.066297776,T,-,Omicron -21638,21638,0.066296982,C,-,Omicron -21639,21639,0.066294599,C,-,Omicron -21640,21640,0.066183375,T,-,Omicron -5584,5584,0.06581046,A,G,Delta -10198,10198,0.065400841,C,T,Omicron -13019,13019,0.06517035,C,T,Delta -26107,26107,0.063786137,G,C,Delta -27507,27507,0.063070556,A,C,Delta -6040,6040,0.058819476,C,T,Delta -29700,29700,0.058597608,A,G,Delta -14014,14014,0.057315368,T,G,Delta -18744,18744,0.054347538,C,T,Delta -7926,7926,0.052269956,C,T,Delta -1048,1048,0.049485375,G,T,Delta -15521,15521,0.048117316,T,A,Delta -22792,22792,0.045551469,C,T,Omicron -29509,29509,0.042691775,C,T,Delta -29050,29050,0.04230887,G,A,Delta -11456,11456,0.042211945,A,G,Delta -16726,16726,0.040159351,C,T,Delta -5515,5515,0.03771341,G,T,Omicron -29748,29748,0.037283611,T,-,Omicron -29747,29747,0.037262956,G,-,Omicron -29757,29757,0.03724945,G,-,Omicron -29740,29740,0.037216083,A,-,Omicron -29758,29758,0.037215288,T,-,Omicron -29746,29746,0.037205755,A,-,Omicron -29756,29756,0.037205755,A,-,Omicron -29739,29739,0.03719066,C,-,Omicron -29738,29738,0.037180333,C,-,Omicron -29745,29745,0.03716921,G,-,Omicron -29741,29741,0.037158088,C,-,Omicron -29744,29744,0.037156499,G,-,Omicron -29743,29743,0.037150143,C,-,Omicron -29750,29750,0.037075465,C,-,Omicron -29751,29751,0.037070698,G,-,Omicron -29753,29753,0.03706037,T,-,Omicron -29752,29752,0.037054015,A,-,Omicron -25614,25614,0.037049162,C,T,Delta -29754,29754,0.037036537,C,-,Omicron -29749,29749,0.037012703,A,-,Omicron -29755,29755,0.036999198,G,-,Omicron -29759,29759,0.036885591,G,-,Omicron -29737,29737,0.03672829,G,-,Omicron -29736,29736,0.036418454,G,-,Omicron -29735,29735,0.036276247,A,-,Omicron -29734,29734,0.036216663,G,-,Omicron -27527,27527,0.034014696,C,T,Delta -11562,11562,0.032465911,G,T,Delta -8835,8835,0.032024952,T,Y,Delta -3948,3948,0.029622267,A,G,Delta -6638,6638,0.028970546,C,T,Delta -27291,27291,0.028874378,T,C,Delta -29870,29870,0.028631307,C,A,Delta -21,21,0.028477116,C,T,Omicron -28073,28073,0.027941472,G,T,Delta -25339,25339,0.027792046,C,T,Delta -11083,11083,0.027037342,G,T,Delta -23284,23284,0.027032546,T,C,Delta -24803,24803,0.025005363,A,G,Omicron -1191,1191,0.024719466,C,T,Delta -5239,5239,0.024452417,C,T,Delta -5730,5730,0.024330079,C,T,Omicron -1267,1267,0.023850673,C,T,Delta -21372,21372,0.02341249,G,T,Delta -5514,5514,0.023291081,T,C,Delta -9559,9559,0.022632292,C,T,Delta -17122,17122,0.021941448,G,T,Delta -27604,27604,0.021918983,G,A,Delta -4237,4237,0.021583279,T,C,Delta -28007,28007,0.021432085,T,C,Delta -19524,19524,0.02137706,C,T,Delta -29868,29868,0.020444407,G,A,Delta -29867,29867,0.019790162,T,A,Delta -29864,29864,0.019618776,G,A,Delta -29862,29862,0.019438808,G,A,Delta -29861,29861,0.019357027,G,A,Delta -526,526,0.019262626,G,T,Delta -20262,20262,0.018877449,A,G,Delta -16064,16064,0.018733962,A,G,Omicron -25352,25352,0.018617215,G,T,Delta -518,518,0.018393142,A,-,Omicron -21897,21897,0.018066963,C,T,Delta -11950,11950,0.017968111,C,T,Omicron -26522,26522,0.017957783,C,T,Omicron -12946,12946,0.017842823,T,C,Delta -27739,27739,0.017825407,C,T,Delta -516,516,0.017515448,T,-,Delta -20418,20418,0.017290444,A,G,Omicron -28472,28472,0.017140292,C,T,Omicron -18585,18585,0.017139498,A,C,Omicron -29253,29253,0.017122951,C,T,Delta -24928,24928,0.016971758,G,T,Delta -515,515,0.016551244,G,-,Delta -27608,27608,0.016020427,A,-,Delta -27609,27609,0.016008564,A,-,Delta -27610,27610,0.016003516,C,-,Delta -27607,27607,0.016002001,A,-,Delta -21137,21137,0.015964645,A,G,Delta -27611,27611,0.015912901,A,-,Delta -27612,27612,0.015900028,C,-,Delta -27613,27613,0.015895989,G,-,Delta -27614,27614,0.015885388,T,-,Delta -25855,25855,0.015873936,G,T,Omicron -27615,27615,0.015862924,C,-,Delta -517,517,0.015857253,T,-,Omicron -27616,27616,0.015813704,T,-,Delta -10323,10323,0.015711478,A,G,Delta -27617,27617,0.015710973,A,-,Delta -1820,1820,0.015542616,G,A,Delta -27619,27619,0.015514346,C,-,Delta -27618,27618,0.015514094,T,-,Delta -20937,20937,0.015252597,G,T,Delta -5365,5365,0.014707141,C,T,Delta -10977,10977,0.014599867,C,T,Delta -21575,21575,0.014423685,C,T,Delta -14940,14940,0.014177782,A,G,Omicron -519,519,0.014010153,T,-,Omicron -24872,24872,0.013999889,G,T,Delta -520,520,0.013956925,G,-,Omicron -18086,18086,0.013797962,C,T,Delta -5672,5672,0.013776584,C,T,Omicron -27579,27579,0.01356524,A,-,Delta -18176,18176,0.013521574,C,T,Delta -27580,27580,0.013486489,T,-,Delta -22801,22801,0.013266135,G,T,Delta -27581,27581,0.013076071,T,-,Delta -27621,27621,0.013023822,G,-,Delta -27620,27620,0.012999086,A,-,Delta -25624,25624,0.012967833,C,T,Omicron -2902,2902,0.012924138,C,T,Omicron -514,514,0.012890045,T,-,Delta -19217,19217,0.012858993,C,M,Omicron -19214,19214,0.012824831,A,R,Omicron -19210,19210,0.01281927,A,R,Omicron -19212,19212,0.012809737,A,R,Omicron -19209,19209,0.012736647,T,K,Omicron -28170,28170,0.012711339,C,T,Delta -28432,28432,0.012681303,C,T,Delta -23401,23401,0.012603308,G,T,Delta -27577,27577,0.012512441,C,-,Delta -27576,27576,0.012412486,T,-,Delta -27575,27575,0.012294106,C,-,Delta -27578,27578,0.012276185,A,-,Delta -27574,27574,0.01227139,A,-,Delta -27573,27573,0.012257255,C,-,Delta -27572,27572,0.012196676,G,-,Delta -27571,27571,0.012086121,A,-,Delta -28877,28877,0.012042297,A,T,Omicron -27622,27622,0.012001564,T,-,Delta -19006,19006,0.011969256,G,T,Delta -27623,27623,0.011876621,T,-,Delta -27570,27570,0.011780201,T,-,Delta -14030,14030,0.011713565,G,A,Delta -8829,8829,0.011591651,C,T,Delta -1729,1729,0.011558838,G,A,Delta -27569,27569,0.011541169,T,-,Delta -1684,1684,0.011512394,C,T,Delta -27582,27582,0.011495988,T,-,Delta -28878,28878,0.011448841,G,C,Omicron -27583,27583,0.011285478,G,-,Delta -27568,27568,0.011275382,T,-,Delta -27584,27584,0.011257461,C,-,Delta -14925,14925,0.011232725,C,T,Delta -15720,15720,0.011228181,C,T,Delta -6408,6408,0.011147158,C,T,Delta -27585,27585,0.011145391,T,-,Delta -12801,12801,0.011122927,G,A,Delta -25702,25702,0.011028526,C,T,Delta -27588,27588,0.011025244,T,-,Delta -27593,27593,0.011020448,G,-,Delta -27592,27592,0.011017924,T,-,Delta -27591,27591,0.011013633,T,-,Delta -27589,27589,0.010981325,G,-,Delta -27586,27586,0.01094523,T,-,Delta -27605,27605,0.010929329,T,-,Delta -2518,2518,0.010921756,G,T,Delta -27590,27590,0.010913679,C,-,Delta -27594,27594,0.01087077,T,-,Delta -27606,27606,0.010861431,A,-,Delta -27595,27595,0.010857392,C,-,Delta -27596,27596,0.010846034,C,-,Delta -27597,27597,0.010833413,T,-,Delta -27598,27598,0.010829122,G,-,Delta -27603,27603,0.010801609,C,-,Delta -27602,27602,0.010797571,G,-,Delta -6661,6661,0.010789241,T,C,Delta -27599,27599,0.010788737,A,-,Delta -27601,27601,0.010788737,G,-,Delta -27600,27600,0.010788232,C,-,Delta -28086,28086,0.010770563,G,T,Delta -28326,28326,0.010725129,G,T,Delta -13482,13482,0.010686511,A,G,Delta -27345,27345,0.010682472,A,T,Delta -27005,27005,0.010637291,C,T,Delta -28895,28895,0.010583528,G,T,Delta -25886,25886,0.010573356,C,T,Omicron -12049,12049,0.01053658,C,T,Delta -27567,27567,0.010487107,C,-,Delta -27566,27566,0.010478273,G,-,Delta -27565,27565,0.010430568,T,-,Delta -27564,27564,0.010421733,T,-,Delta -25202,25202,0.010366708,T,K,Delta -510,510,0.010325487,G,-,Omicron -27587,27587,0.010309411,T,-,Delta -18360,18360,0.010131715,A,G,Delta -513,513,0.010090329,A,-,Omicron -511,511,0.010056168,T,-,Omicron \ No newline at end of file diff --git a/example_output/olivar-design.csv b/example_output/olivar-design.csv deleted file mode 100644 index 3a598dd..0000000 --- a/example_output/olivar-design.csv +++ /dev/null @@ -1,147 +0,0 @@ -reference,amplicon_id,pool,fP,rP,start,insert_start,insert_end,end,amplicon,insert,fP_full,rP_full -olivar-ref,olivar-ref_1,1,cggctgcatgcttagtgc,gacctcctccacggagtct,100,118,360,379,cggctgcatgcttagtgcactcacgcagtataattaataactaattactgtcgttgacaggacacgagtaactcgtctatcttctgcaggctgcttacggtttcgtccgtGttgcagccgatcatcagcacatctaggtttCgtccgggtgtgaccgaaaggtaagatggagagccttgtccctggtttcaacgagaaaacacacgtccaactcagtttgcctgttttacaggttcgcgacgtgctcgtacgtggctttggagactccgtggaggaggtc,actcacgcagtataattaataactaattactgtcgttgacaggacacgagtaactcgtctatcttctgcaggctgcttacggtttcgtccgtGttgcagccgatcatcagcacatctaggtttCgtccgggtgtgaccgaaaggtaagatggagagccttgtccctggtttcaacgagaaaacacacgtccaactcagtttgcctgttttacaggttcgcgacgtgctcgtacgtggctttgg,cggctgcatgcttagtgc,gacctcctccacggagtct -olivar-ref,olivar-ref_2,2,caacgagaaaacacacgtcca,accgtactgaatgccttcgag,289,310,538,559,caacgagaaaacacacgtccaactcagtttgcctgttttacaggttcgcgacgtgctcgtacgtggctttggagactccgtggaggaggtcttatcagaggcacgtcaacatcttaaagatggcacttgtggcttagtagaagttgaaaaaggcgttttgcctcaacttgaacagccctatgtgttcatcaaacgttcggatgctcgaactgcacctcatgGTcATGTTATGgttgaGctggtagcagaactcgaaggcattcagtacggt,actcagtttgcctgttttacaggttcgcgacgtgctcgtacgtggctttggagactccgtggaggaggtcttatcagaggcacgtcaacatcttaaagatggcacttgtggcttagtagaagttgaaaaaggcgttttgcctcaacttgaacagccctatgtgttcatcaaacgttcggatgctcgaactgcacctcatgGTcATGTTATGgttgaGctggtagcagaa,caacgagaaaacacacgtcca,accgtactgaatgccttcgag -olivar-ref,olivar-ref_3,1,gttcatcaaacgttcggatgct,acgcatgagttcacgggtaa,472,494,770,790,gttcatcaaacgttcggatgctcgaactgcacctcatgGTcATGTTATGgttgaGctggtagcagaactcgaaggcattcagtacggtcgtagtggtgagacacttggtgtccttgtccctcatgtgggcgaaataccagtggcttaccgcaaggttcttcttcgtaagaacggtaataaaggagctggtggccatagTtacggcgccgatctaaagtcatttgacttaggcgacgagcttggcactgatccttatgaagattttcaagaaaactggaacactaaacatagcagtggtgttacccgtgaactcatgcgt,cgaactgcacctcatgGTcATGTTATGgttgaGctggtagcagaactcgaaggcattcagtacggtcgtagtggtgagacacttggtgtccttgtccctcatgtgggcgaaataccagtggcttaccgcaaggttcttcttcgtaagaacggtaataaaggagctggtggccatagTtacggcgccgatctaaagtcatttgacttaggcgacgagcttggcactgatccttatgaagattttcaagaaaactggaacactaaacatagcagtggtg,gttcatcaaacgttcggatgct,acgcatgagttcacgggtaa -olivar-ref,olivar-ref_4,2,aggttcttcttcgtaagaacggtaata,ccagcacgtgctagaaggt,624,651,872,891,aggttcttcttcgtaagaacggtaataaaggagctggtggccatagTtacggcgccgatctaaagtcatttgacttaggcgacgagcttggcactgatccttatgaagattttcaagaaaactggaacactaaacatagcagtggtgttacccgtgaactcatgcgtgagcttaacggaggggcatacactcgctatgtcgataacaacttctgtggccctgatggctaccctcttgagtgcattaaagaccttctagcacgtgctgg,aaggagctggtggccatagTtacggcgccgatctaaagtcatttgacttaggcgacgagcttggcactgatccttatgaagattttcaagaaaactggaacactaaacatagcagtggtgttacccgtgaactcatgcgtgagcttaacggaggggcatacactcgctatgtcgataacaacttctgtggccctgatggctaccctcttgagtgcattaaag,aggttcttcttcgtaagaacggtaata,ccagcacgtgctagaaggt -olivar-ref,olivar-ref_5,1,cgataacaacttctgtggccct,actggatagacagatcgaattctacc,823,845,1156,1182,cgataacaacttctgtggccctgatggctaccctcttgagtgcattaaagaccttctagcacgtgctggtaaagcttcatgcactttgtccgaacaactggactttattgacactaagaggggtgtatactgctgccgtgaacatgagcatgaaattgcttggtacacggaacgttctgaaaagagctatgaattgcagacaccttttgaaattaaattggcaaaGaaatttgacaccttcaatggggaatgtccaaattttgtatttcccttaaattccataatcaagactattcaaccaagggttgaaaagaaaaagcttgatggctttatgggtagaattcgatctgtctatccagt,gatggctaccctcttgagtgcattaaagaccttctagcacgtgctggtaaagcttcatgcactttgtccgaacaactggactttattgacactaagaggggtgtatactgctgccgtgaacatgagcatgaaattgcttggtacacggaacgttctgaaaagagctatgaattgcagacaccttttgaaattaaattggcaaaGaaatttgacaccttcaatggggaatgtccaaattttgtatttcccttaaattccataatcaagactattcaaccaagggttgaaaagaaaaagcttgatggctttatg,cgataacaacttctgtggccct,actggatagacagatcgaattctacc -olivar-ref,olivar-ref_6,2,gacactaagaggggtgtatactgc,tctcagtgccacaaaattcgc,932,956,1286,1307,gacactaagaggggtgtatactgctgccgtgaacatgagcatgaaattgcttggtacacggaacgttctgaaaagagctatgaattgcagacaccttttgaaattaaattggcaaaGaaatttgacaccttcaatggggaatgtccaaattttgtatttcccttaaattccataatcaagactattcaaccaagggttgaaaagaaaaagcttgatggctttatgggtagaattcgatctgtctatccagttgcgtcacCaaatgaatgcaaccaaatgtgcctttcaactctcatgaagtgtgatcattgtggtgaaacttcatggcagacgggCgattttgttaaagccacttgcgaattttgtggcactgaga,tgccgtgaacatgagcatgaaattgcttggtacacggaacgttctgaaaagagctatgaattgcagacaccttttgaaattaaattggcaaaGaaatttgacaccttcaatggggaatgtccaaattttgtatttcccttaaattccataatcaagactattcaaccaagggttgaaaagaaaaagcttgatggctttatgggtagaattcgatctgtctatccagttgcgtcacCaaatgaatgcaaccaaatgtgcctttcaactctcatgaagtgtgatcattgtggtgaaacttcatggcagacgggCgattttgttaaagccactt,gacactaagaggggtgtatactgc,tctcagtgccacaaaattcgc -olivar-ref,olivar-ref_7,1,cattgtggtgaaacttcatggca,acacctgtatggttacaacctatgt,1238,1261,1553,1578,cattgtggtgaaacttcatggcagacgggCgattttgttaaagccacttgcgaattttgtggcactgagaatttgactaaagaaggtgccactacttgtggttacttaccccaaaatgctgttgttaaaatttattgtccagcatgtcacaattcagaagtaggacctgagcatagtcttgccgaataccataatgaatctggcttgaaaaccattcttcgtaagggtggtcgcactattgcctttggaggctgtgtgttctcttatgttggttgccataacaagtgtgcctattgggttccacgtgctagcgctaacataggttgtaaccatacaggtgt,gacgggCgattttgttaaagccacttgcgaattttgtggcactgagaatttgactaaagaaggtgccactacttgtggttacttaccccaaaatgctgttgttaaaatttattgtccagcatgtcacaattcagaagtaggacctgagcatagtcttgccgaataccataatgaatctggcttgaaaaccattcttcgtaagggtggtcgcactattgcctttggaggctgtgtgttctcttatgttggttgccataacaagtgtgcctattgggttccacgtgctagcgcta,cattgtggtgaaacttcatggca,acacctgtatggttacaacctatgt -olivar-ref,olivar-ref_8,2,agcatagtcttgccgaataccata,caccaacaatattgatgttgactttctc,1407,1431,1633,1661,agcatagtcttgccgaataccataatgaatctggcttgaaaaccattcttcgtaagggtggtcgcactattgcctttggaggctgtgtgttctcttatgttggttgccataacaagtgtgcctattgggttccacgtgctagcgctaacataggttgtaaccatacaggtgttgttggagaaggttccgaaggtcttaatgacaaccttcttgaaatactccaaaaagagaaagtcaacatcaatattgttggtg,atgaatctggcttgaaaaccattcttcgtaagggtggtcgcactattgcctttggaggctgtgtgttctcttatgttggttgccataacaagtgtgcctattgggttccacgtgctagcgctaacataggttgtaaccatacaggtgttgttggagaaggttccgaaggtcttaatgacaaccttcttgaaatactccaaaaa,agcatagtcttgccgaataccata,caccaacaatattgatgttgactttctc -olivar-ref,olivar-ref_9,1,gaaggttccgaaggtcttaatgac,gcgggagaaaattgatcgtacaa,1586,1610,1892,1915,gaaggttccgaaggtcttaatgacaaccttcttgaaatactccaaaaagagaaagtcaacatcaatattgttggtgactttaaacttaatgaagagatCgccattattttggcatctttttctgcttccacaagtgcttttgtGgaaactgtgaaaggtttggattataaagcattcaaacaaattgttgaatcctgtggtaattttaaagttacaaaaggaaaagctaaaaaaGgtgcctggaatattggtgaacagaaatcaatactgagtcctctttatgcatttgcatcagaggctgctcgtgttgtacgatcaattttctcccgc,aaccttcttgaaatactccaaaaagagaaagtcaacatcaatattgttggtgactttaaacttaatgaagagatCgccattattttggcatctttttctgcttccacaagtgcttttgtGgaaactgtgaaaggtttggattataaagcattcaaacaaattgttgaatcctgtggtaattttaaagttacaaaaggaaaagctaaaaaaGgtgcctggaatattggtgaacagaaatcaatactgagtcctctttatgcatttgcatcagaggctgctcgtg,gaaggttccgaaggtcttaatgac,gcgggagaaaattgatcgtacaa -olivar-ref,olivar-ref_10,2,actgagtcctctttatgcatttgc,agtgccaaagatgttagttagcca,1852,1876,2098,2122,actgagtcctctttatgcatttgcatcagaggctgctcgtgttgtacgatcaattttctcccgcactcttgaaactgctcaaaattctgtgcgtgttttacagaaggccgctataacaatactagatggaatttcacagtattcactgagactcattgatgctatgatgttcacatctgatttggctactaacaatctagttgtaatggcctacattacaggtggtgttgttcagttgacttcgcagtggctaactaacatctttggcact,atcagaggctgctcgtgttgtacgatcaattttctcccgcactcttgaaactgctcaaaattctgtgcgtgttttacagaaggccgctataacaatactagatggaatttcacagtattcactgagactcattgatgctatgatgttcacatctgatttggctactaacaatctagttgtaatggcctacattacaggtggtgttgttcagttgacttcgcag,actgagtcctctttatgcatttgc,agtgccaaagatgttagttagcca -olivar-ref,olivar-ref_11,1,gaaggccgctataacaatactagatg,tgcacaggtgacaatttgtcc,1954,1980,2248,2269,gaaggccgctataacaatactagatggaatttcacagtattcactgagactcattgatgctatgatgttcacatctgatttggctactaacaatctagttgtaatggcctacattacaggtggtgttgttcagttgacttcgcagtggctaactaacatctttggcactgtttatgaaaaactcaaacccgtccttgattggcttgaagagaagtttaaggaaggtgtagagtttcttagagacggttgggaaattgttaaatttatctcaacctgtgcttgtgaaattgtcggtggacaaattgtcacctgtgca,gaatttcacagtattcactgagactcattgatgctatgatgttcacatctgatttggctactaacaatctagttgtaatggcctacattacaggtggtgttgttcagttgacttcgcagtggctaactaacatctttggcactgtttatgaaaaactcaaacccgtccttgattggcttgaagagaagtttaaggaaggtgtagagtttcttagagacggttgggaaattgttaaatttatctcaacctgtgcttgtgaaattgtcggt,gaaggccgctataacaatactagatg,tgcacaggtgacaatttgtcc -olivar-ref,olivar-ref_12,2,aaactcaaacccgtccttgattg,ggaagtgtttctccctctaagaagataa,2132,2155,2480,2508,aaactcaaacccgtccttgattggcttgaagagaagtttaaggaaggtgtagagtttcttagagacggttgggaaattgttaaatttatctcaacctgtgcttgtgaaattgtcggtggacaaattgtcacctgtgcaaaggaaattaaggagagtgttcagacattctttaagcttgtaaataaatttttggctttgtgtgctgactctatcattattggtggagctaaacttaaagccttgaatttaggtgaaacatttgtcacgcactcaaagggattgtacagaaagtgtgttaaatccagagaagaaactggcctactcatgcctctaaaagcCccaaaagaaattatcttcttagagggagaaacacttcc,gcttgaagagaagtttaaggaaggtgtagagtttcttagagacggttgggaaattgttaaatttatctcaacctgtgcttgtgaaattgtcggtggacaaattgtcacctgtgcaaaggaaattaaggagagtgttcagacattctttaagcttgtaaataaatttttggctttgtgtgctgactctatcattattggtggagctaaacttaaagccttgaatttaggtgaaacatttgtcacgcactcaaagggattgtacagaaagtgtgttaaatccagagaagaaactggcctactcatgcctctaaaagcCccaaaagaaa,aaactcaaacccgtccttgattg,ggaagtgtttctccctctaagaagataa -olivar-ref,olivar-ref_13,1,tggagctaaacttaaagccttgaattt,tgtaccaaccaatggagcttcaa,2353,2380,2585,2608,tggagctaaacttaaagccttgaatttaggtgaaacatttgtcacgcactcaaagggattgtacagaaagtgtgttaaatccagagaagaaactggcctactcatgcctctaaaagcCccaaaagaaattatcttcttagagggagaaacacttcccacagaagtGttaacagaggaagttgtcttgaaaactggtgatttacaaccattagaacaacctactagtgaagctgttgaagctccattggttggtaca,aggtgaaacatttgtcacgcactcaaagggattgtacagaaagtgtgttaaatccagagaagaaactggcctactcatgcctctaaaagcCccaaaagaaattatcttcttagagggagaaacacttcccacagaagtGttaacagaggaagttgtcttgaaaactggtgatttacaaccattagaacaacctactagtgaagctg,tggagctaaacttaaagccttgaattt,tgtaccaaccaatggagcttcaa -olivar-ref,olivar-ref_14,2,ccattagaacaacctactagtgaagct,aacacaggcgaactcatttacttc,2558,2585,2863,2887,ccattagaacaacctactagtgaagctgttgaagctccattggttggtacaccagtttgtattaacgggcttatgttgctcgaaatcaaagacacagaaaagtactgtgcccttgcacctaatatgatggtaacaaacaataccttcacactcaaaggcggtgcaccaacaaaggttacttttggtgatgacactgtgatagaagtgcaaggttacaagagtgtgaatatcaCttttgaacttgatgaaaggattgataaagtacttaatgagaAgtgctctgcctatacagttgaactcggtacagaagtaaatgagttcgcctgtgtt,gttgaagctccattggttggtacaccagtttgtattaacgggcttatgttgctcgaaatcaaagacacagaaaagtactgtgcccttgcacctaatatgatggtaacaaacaataccttcacactcaaaggcggtgcaccaacaaaggttacttttggtgatgacactgtgatagaagtgcaaggttacaagagtgtgaatatcaCttttgaacttgatgaaaggattgataaagtacttaatgagaAgtgctctgcctatacagttgaactcggtaca,ccattagaacaacctactagtgaagct,aacacaggcgaactcatttacttc -olivar-ref,olivar-ref_15,1,acactcaaaggcggtgca,ctccactcatctaaatcaatgccc,2705,2723,2943,2967,acactcaaaggcggtgcaccaacaaaggttacttttggtgatgacactgtgatagaagtgcaaggttacaagagtgtgaatatcaCttttgaacttgatgaaaggattgataaagtacttaatgagaAgtgctctgcctatacagttgaactcggtacagaagtaaatgagttcgcctgtgttgtggcagatgctgtCataaaaactttgcaaccagtatctgaattacttacaccactgggcattgatttagatgagtggag,ccaacaaaggttacttttggtgatgacactgtgatagaagtgcaaggttacaagagtgtgaatatcaCttttgaacttgatgaaaggattgataaagtacttaatgagaAgtgctctgcctatacagttgaactcggtacagaagtaaatgagttcgcctgtgttgtggcagatgctgtCataaaaactttgcaaccagtatctgaattacttacaccact,acactcaaaggcggtgca,ctccactcatctaaatcaatgccc -olivar-ref,olivar-ref_16,2,Cataaaaactttgcaaccagtatctgaatt,gttccatctctaattgaggttgaacc,2902,2932,3285,3311,CataaaaactttgcaaccagtatctgaattacttacaccactgggcattgatttagatgagtggagtatggctacatactacttatttgatgagtctggtgagtttaaattggcttcacatatgtattgttctttCtaccctccagatgaggatgaagaagaaggtgattgtgaagaagaagagtttgagccatcaactcaatatgagtatggtactgaagatgattaccaaggtaaacctttggaatttggtgccacttctgctgctcttcaacctgaagaagagcaagaagaagattggttagatgatgatagtcaacaaactgttggtcaacaagaCggcagtgaggacaatcagacaactactattcaaacaattgttgaggttcaacctcaattagagatggaac,acttacaccactgggcattgatttagatgagtggagtatggctacatactacttatttgatgagtctggtgagtttaaattggcttcacatatgtattgttctttCtaccctccagatgaggatgaagaagaaggtgattgtgaagaagaagagtttgagccatcaactcaatatgagtatggtactgaagatgattaccaaggtaaacctttggaatttggtgccacttctgctgctcttcaacctgaagaagagcaagaagaagattggttagatgatgatagtcaacaaactgttggtcaacaagaCggcagtgaggacaatcagacaactactattcaaacaattgttga,Cataaaaactttgcaaccagtatctgaatt,gttccatctctaattgaggttgaacc -olivar-ref,olivar-ref_17,1,gagccatcaactcaatatgagtatgg,tccatgtttaaggtaaacattggctg,3089,3115,3443,3469,gagccatcaactcaatatgagtatggtactgaagatgattaccaaggtaaacctttggaatttggtgccacttctgctgctcttcaacctgaagaagagcaagaagaagattggttagatgatgatagtcaacaaactgttggtcaacaagaCggcagtgaggacaatcagacaactactattcaaacaattgttgaggttcaacctcaattagagatggaacttacaccagttgttcagactattgaagtgaatagttttagtggttatttaaaacttactgacaatgtatacattaaaaatgcagacattgtggaagaagctaaaaaggtaaaaccaacagtggttgttaatgcagccaatgtttaccttaaacatgga,tactgaagatgattaccaaggtaaacctttggaatttggtgccacttctgctgctcttcaacctgaagaagagcaagaagaagattggttagatgatgatagtcaacaaactgttggtcaacaagaCggcagtgaggacaatcagacaactactattcaaacaattgttgaggttcaacctcaattagagatggaacttacaccagttgttcagactattgaagtgaatagttttagtggttatttaaaacttactgacaatgtatacattaaaaatgcagacattgtggaagaagctaaaaaggtaaaaccaacagtggttgttaatg,gagccatcaactcaatatgagtatgg,tccatgtttaaggtaaacattggctg -olivar-ref,olivar-ref_18,2,cagactattgaagtgaatagttttagtggtta,ccgacaacatgaagacagtgttta,3326,3358,3597,3621,cagactattgaagtgaatagttttagtggttatttaaaacttactgacaatgtatacattaaaaatgcagacattgtggaagaagctaaaaaggtaaaaccaacagtggttgttaatgcagccaatgtttaccttaaacatggaggaggtgttgcaggagccttaaataaggctactaacaatgccatgcaagttgaatctgatgattacatagctactaatggaccacttaaagtgggtggtagttgtgttttaagcggacacaatcttgctaaacactgtcttcatgttgtcgg,tttaaaacttactgacaatgtatacattaaaaatgcagacattgtggaagaagctaaaaaggtaaaaccaacagtggttgttaatgcagccaatgtttaccttaaacatggaggaggtgttgcaggagccttaaataaggctactaacaatgccatgcaagttgaatctgatgattacatagctactaatggaccacttaaagtgggtggtagttgtgttttaagcggacacaatcttgc,cagactattgaagtgaatagttttagtggtta,ccgacaacatgaagacagtgttta -olivar-ref,olivar-ref_19,1,ggaccacttaaagtgggtggta,acagctaagtagacatttgtgcga,3548,3570,3771,3795,ggaccacttaaagtgggtggtagttgtgttttaagcggacacaatcttgctaaacactgtcttcatgttgtcggcccaaatgttaacaaaggtgaagacattcaacttcttaagagtgcttatgaaaattttaatcagcacgaagttctacttgcaccattattatcagctggtatttttggtgctgaccctatacattctttaagagtttgtgtagatactgttcgcacaaatgtctacttagctgt,gttgtgttttaagcggacacaatcttgctaaacactgtcttcatgttgtcggcccaaatgttaacaaaggtgaagacattcaacttcttaagagtgcttatgaaaattttaatcagcacgaagttctacttgcaccattattatcagctggtatttttggtgctgaccctatacattctttaagagtttgtgtagatactgt,ggaccacttaaagtgggtggta,acagctaagtagacatttgtgcga -olivar-ref,olivar-ref_20,2,gcacgaagttctacttgcacc,gatgaagattgccattaatgtcaatataaagta,3685,3706,4025,4058,gcacgaagttctacttgcaccattattatcagctggtatttttggtgctgaccctatacattctttaagagtttgtgtagatactgttcgcacaaatgtctacttagctgtctttgataaaaatctctatgacaaacttgtttcaagctttttggaaatgaagagtgaaaagcaagttgaacaaaagatcgctgagattcctaaagaggaagttaagccatttataactgaaagtaaaccttcagttgaacagagaaaacaagAtgataagaaaatcaaagcttgtgttgaagaagttacaacaactctggaagaaactaagttcctcacagaaaacttgttactttatattgacattaatggcaatcttcatc,attattatcagctggtatttttggtgctgaccctatacattctttaagagtttgtgtagatactgttcgcacaaatgtctacttagctgtctttgataaaaatctctatgacaaacttgtttcaagctttttggaaatgaagagtgaaaagcaagttgaacaaaagatcgctgagattcctaaagaggaagttaagccatttataactgaaagtaaaccttcagttgaacagagaaaacaagAtgataagaaaatcaaagcttgtgttgaagaagttacaacaactctggaagaaactaagttcctcacagaaaacttgt,gcacgaagttctacttgcacc,gatgaagattgccattaatgtcaatataaagta -olivar-ref,olivar-ref_21,1,caactctggaagaaactaagttcctc,cactgtctttgcctcctctaca,3987,4013,4278,4300,caactctggaagaaactaagttcctcacagaaaacttgttactttatattgacattaatggcaatcttcatccagattctgccactcttgttagtgacattgacatcactttcttaaagaaagatgctccatatatagtgggtgatgttgttcaagagggtgttttaactgctgtggttatacctactaaaaagGctGgtggcactactgaaatgctagcgaaagctttgagaaaagtgccaacagacaaTtatataaccacttacccgggtcagggtttaaatggttacactgtagaggaggcaaagacagtg,acagaaaacttgttactttatattgacattaatggcaatcttcatccagattctgccactcttgttagtgacattgacatcactttcttaaagaaagatgctccatatatagtgggtgatgttgttcaagagggtgttttaactgctgtggttatacctactaaaaagGctGgtggcactactgaaatgctagcgaaagctttgagaaaagtgccaacagacaaTtatataaccacttacccgggtcagggtttaaatggttacac,caactctggaagaaactaagttcctc,cactgtctttgcctcctctaca -olivar-ref,olivar-ref_22,2,ggcactactgaaatgctagcg,ttgataagtgacgctacagttgtttta,4187,4208,4545,4572,ggcactactgaaatgctagcgaaagctttgagaaaagtgccaacagacaaTtatataaccacttacccgggtcagggtttaaatggttacactgtagaggaggcaaagacagtgcttaaaaagtgtaaaagtgcCttttacattctaccatctattatctctaatgagaagcaagaaattcttggaactgtttcttggaatttgcgagaaatgcttgcacatgcagaagaaacacgcaaattaatgcctgtctgtgtggaaactaaagccatagtttcaactatacagcgtaaatataagggtattaaaatacaagagggtgtggttgattatggtgctagattttacttttacaccagtaaaacaactgtagcgtcacttatcaa,aaagctttgagaaaagtgccaacagacaaTtatataaccacttacccgggtcagggtttaaatggttacactgtagaggaggcaaagacagtgcttaaaaagtgtaaaagtgcCttttacattctaccatctattatctctaatgagaagcaagaaattcttggaactgtttcttggaatttgcgagaaatgcttgcacatgcagaagaaacacgcaaattaatgcctgtctgtgtggaaactaaagccatagtttcaactatacagcgtaaatataagggtattaaaatacaagagggtgtggttgattatggtgctagattttacttttacaccag,ggcactactgaaatgctagcg,ttgataagtgacgctacagttgtttta -olivar-ref,olivar-ref_23,1,ccatagtttcaactatacagcgtaaatataag,agattgtccagaataggaccaatctttat,4455,4487,4796,4825,ccatagtttcaactatacagcgtaaatataagggtattaaaatacaagagggtgtggttgattatggtgctagattttacttttacaccagtaaaacaactgtagcgtcacttatcaacacacttaacgatctaaatgaaactcttgttacaatgccacttggctatgtaacacatggcttaaatttggaagaagctgctcggtatatgagatctctcaaagtgccagctacagtttctgtttcttcacctgatgctgttacagcgtataatggttatcttacttcttcttctaaaacacctgaagaacattttattgaaaccatctcacttgctggttcctataaagattggtcctattctggacaatct,ggtattaaaatacaagagggtgtggttgattatggtgctagattttacttttacaccagtaaaacaactgtagcgtcacttatcaacacacttaacgatctaaatgaaactcttgttacaatgccacttggctatgtaacacatggcttaaatttggaagaagctgctcggtatatgagatctctcaaagtgccagctacagtttctgtttcttcacctgatgctgttacagcgtataatggttatcttacttcttcttctaaaacacctgaagaacattttattgaaaccatctcacttgctggttcct,ccatagtttcaactatacagcgtaaatataag,agattgtccagaataggaccaatctttat -olivar-ref,olivar-ref_24,2,gatgctgttacagcgtataatggtta,acaacttgcgtgtggaggtta,4706,4732,4995,5016,gatgctgttacagcgtataatggttatcttacttcttcttctaaaacacctgaagaacattttattgaaaccatctcacttgctggttcctataaagattggtcctattctggacaatctacacaactaggtatagaatttcttaagagaggtgataaaagtgtatattacactagtaatcctaccacattccacctagatggtgaagttatcacctttgacaatcttaagacacttctttctttgagagaagtgaggactattaaggtgtttacaacagtagacaacattaacctccacacgcaagttgt,tcttacttcttcttctaaaacacctgaagaacattttattgaaaccatctcacttgctggttcctataaagattggtcctattctggacaatctacacaactaggtatagaatttcttaagagaggtgataaaagtgtatattacactagtaatcctaccacattccacctagatggtgaagttatcacctttgacaatcttaagacacttctttctttgagagaagtgaggactattaaggtgtttacaacagtagacaacat,gatgctgttacagcgtataatggtta,acaacttgcgtgtggaggtta -olivar-ref,olivar-ref_25,1,gtaatcctaccacattccacctaga,tcaaaagcctcaacacgtagagt,4881,4906,5140,5163,gtaatcctaccacattccacctagatggtgaagttatcacctttgacaatcttaagacacttctttctttgagagaagtgaggactattaaggtgtttacaacagtagacaacattaacctccacacgcaagttgtggacatgtcaatgacatatggacaacagtttggtccaacttatttggatggagctgatgttactaaaataaaacctcataattcacatgaaggtaaaacattttatgttttacctaatgatgacactctacgtgttgaggcttttga,tggtgaagttatcacctttgacaatcttaagacacttctttctttgagagaagtgaggactattaaggtgtttacaacagtagacaacattaacctccacacgcaagttgtggacatgtcaatgacatatggacaacagtttggtccaacttatttggatggagctgatgttactaaaataaaacctcataattcacatgaaggtaaaacattttatgttttacctaatgatgac,gtaatcctaccacattccacctaga,tcaaaagcctcaacacgtagagt -olivar-ref,olivar-ref_26,2,tttggtccaacttatttggatggag,acagtaggctaagataagtgcaca,5045,5070,5395,5419,tttggtccaacttatttggatggagctgatgttactaaaataaaacctcataattcacatgaaggtaaaacattttatgttttacctaatgatgacactctacgtgttgaggcttttgagtactaccacacaactgatcCtagttttctgggtaggtacatgtcagcattaaatcacactaaaaagtggaaataCccacaagttaatggtttaacttctattaaatgggcagataacaactgttatcttgccactgcattgttaacactccaacaaatagagttgaagtttaatccacctgctctacaagatgcttattaCagagcaagggctggtgaagcTgctaacttttgtgcacttatcttagcctactgt,ctgatgttactaaaataaaacctcataattcacatgaaggtaaaacattttatgttttacctaatgatgacactctacgtgttgaggcttttgagtactaccacacaactgatcCtagttttctgggtaggtacatgtcagcattaaatcacactaaaaagtggaaataCccacaagttaatggtttaacttctattaaatgggcagataacaactgttatcttgccactgcattgttaacactccaacaaatagagttgaagtttaatccacctgctctacaagatgcttattaCagagcaagggctggtgaagcTgctaacttt,tttggtccaacttatttggatggag,acagtaggctaagataagtgcaca -olivar-ref,olivar-ref_27,1,ccacctgctctacaagatgctt,tgtacataacagcttctacacccttaa,5339,5361,5549,5576,ccacctgctctacaagatgcttattaCagagcaagggctggtgaagcTgctaacttttgtgcacttatcttagcctactgtaataagacagtaggtgagttaggtgatgttagagaaacaatgagttacttgtttcaacatgccaatttagattcttgcaaaagagtcttgaacgTGgtgtgtaaaacttgtggacaacagcagacaacccttaagggtgtagaagctgttatgtaca,attaCagagcaagggctggtgaagcTgctaacttttgtgcacttatcttagcctactgtaataagacagtaggtgagttaggtgatgttagagaaacaatgagttacttgtttcaacatgccaatttagattcttgcaaaagagtcttgaacgTGgtgtgtaaaacttgtggacaacagcagacaaccc,ccacctgctctacaagatgctt,tgtacataacagcttctacacccttaa -olivar-ref,olivar-ref_28,2,tgatgttagagaaacaatgagttacttgttt,gcaccgtctatgcaatacaaagt,5443,5474,5794,5817,tgatgttagagaaacaatgagttacttgtttcaacatgccaatttagattcttgcaaaagagtcttgaacgTGgtgtgtaaaacttgtggacaacagcagacaacccttaagggtgtagaagctgttatgtacatgggcacActttcttatgaacaatttaagaaaggtgttcagataccttgtacgtgtggtaaacaagctacaaaatatctagtacaacaggagtcaCcttttgttatgatgtcagcaccacctgctcagtatgaacttaagcatggtacatttaCttgtgctagtgagtacactggtaattaccagtgtggtcactataaacatataacttctaaagaaactttgtattgcatagacggtgc,caacatgccaatttagattcttgcaaaagagtcttgaacgTGgtgtgtaaaacttgtggacaacagcagacaacccttaagggtgtagaagctgttatgtacatgggcacActttcttatgaacaatttaagaaaggtgttcagataccttgtacgtgtggtaaacaagctacaaaatatctagtacaacaggagtcaCcttttgttatgatgtcagcaccacctgctcagtatgaacttaagcatggtacatttaCttgtgctagtgagtacactggtaattaccagtgtggtcactataaacatataacttctaaagaa,tgatgttagagaaacaatgagttacttgttt,gcaccgtctatgcaatacaaagt -olivar-ref,olivar-ref_29,1,acgtgtggtaaacaagctacaaaata,gatatggttggtttggtacaagatca,5627,5653,6000,6026,acgtgtggtaaacaagctacaaaatatctagtacaacaggagtcaCcttttgttatgatgtcagcaccacctgctcagtatgaacttaagcatggtacatttaCttgtgctagtgagtacactggtaattaccagtgtggtcactataaacatataacttctaaagaaactttgtattgcatagacggtgctttacttacaaagtcctcagaatacaaaggtcctattacggatgttttctacaaagaaaacagttacacaacaaccataaaaccagttacttataaattggatggtGttgtttgtacagaaattgaccctaagttggacaattattataagaaagacaattcttatttcacagagcaaccaattgatcttgtaccaaaccaaccatatc,tctagtacaacaggagtcaCcttttgttatgatgtcagcaccacctgctcagtatgaacttaagcatggtacatttaCttgtgctagtgagtacactggtaattaccagtgtggtcactataaacatataacttctaaagaaactttgtattgcatagacggtgctttacttacaaagtcctcagaatacaaaggtcctattacggatgttttctacaaagaaaacagttacacaacaaccataaaaccagttacttataaattggatggtGttgtttgtacagaaattgaccctaagttggacaattattataagaaagacaattcttatttcacagagcaaccaat,acgtgtggtaaacaagctacaaaata,gatatggttggtttggtacaagatca -olivar-ref,olivar-ref_30,2,cacaacaaccataaaaccagttacttataaat,ggtgtgtagtgtttataatcaatagcca,5884,5916,6167,6195,cacaacaaccataaaaccagttacttataaattggatggtGttgtttgtacagaaattgaccctaagttggacaattattataagaaagacaattcttatttcacagagcaaccaattgatcttgtaccaaaccaaccatatccaaacgcaagcttCgataattttaagtttgtatgtgataatatcaaatttgctgatgatttaaaccagttaactggttataagaaacctgcttcaagagagcttaaagttacatttttccctgacttaaatggtgatgtggtggctattgattataaacactacacacc,tggatggtGttgtttgtacagaaattgaccctaagttggacaattattataagaaagacaattcttatttcacagagcaaccaattgatcttgtaccaaaccaaccatatccaaacgcaagcttCgataattttaagtttgtatgtgataatatcaaatttgctgatgatttaaaccagttaactggttataagaaacctgcttcaagagagcttaaagttacatttttccctgacttaaatggtgatgtgg,cacaacaaccataaaaccagttacttataaat,ggtgtgtagtgtttataatcaatagcca -olivar-ref,olivar-ref_31,1,agttaactggttataagaaacctgcttc,ccctgcgcgtcctctg,6093,6121,6353,6369,agttaactggttataagaaacctgcttcaagagagcttaaagttacatttttccctgacttaaatggtgatgtggtggctattgattataaacactacacaccctcttttaagaaaggagctaaattgttacataaacctattgtttggcatgttaacaatgcaactaataaagccacgtataaaccaaatacctggtgtatacgttgtctttggagcacaaaaccagttgaaacatcaaattcgtttgatgtactgaagtcagaggacgcgcaggg,aagagagcttaaagttacatttttccctgacttaaatggtgatgtggtggctattgattataaacactacacaccctcttttaagaaaggagctaaattgttacataaacctattgtttggcatgttaacaatgcaactaataaagccacgtataaaccaaatacctggtgtatacgttgtctttggagcacaaaaccagttgaaacatcaaattcgtttgatgtactgaagt,agttaactggttataagaaacctgcttc,ccctgcgcgtcctctg -olivar-ref,olivar-ref_32,2,ccaaatacctggtgtatacgttgtct,attgtctacataagcagccattagatc,6278,6304,6544,6571,ccaaatacctggtgtatacgttgtctttggagcacaaaaccagttgaaacatcaaattcgtttgatgtactgaagtcagaggacgcgcagggaatggataatcttgcctgcgaagatctaaaacCagtctCtgaagaagtagtggaaaatcctaccatacagaaagacgttcttgagtgtaatgtgaaaactaccgaagttgtaggagacattatacttaaaccagcaaataataGTTtaaaaattacagaagaggttggccacacagatctaatggctgcttatgtagacaat,ttggagcacaaaaccagttgaaacatcaaattcgtttgatgtactgaagtcagaggacgcgcagggaatggataatcttgcctgcgaagatctaaaacCagtctCtgaagaagtagtggaaaatcctaccatacagaaagacgttcttgagtgtaatgtgaaaactaccgaagttgtaggagacattatacttaaaccagcaaataataGTTtaaaaattacagaagaggttggccacaca,ccaaatacctggtgtatacgttgtct,attgtctacataagcagccattagatc -olivar-ref,olivar-ref_33,1,tgagtgtaatgtgaaaactaccgaag,aggcttagcataattagctatagtatccc,6451,6477,6668,6697,tgagtgtaatgtgaaaactaccgaagttgtaggagacattatacttaaaccagcaaataataGTTtaaaaattacagaagaggttggccacacagatctaatggctgcttatgtagacaattctagtcttactattaagaaacctaatgaattatctagagtattaggtttgaaaacccttgctactCatggtttagctgctgttaatagTgtcccttgggatactatagctaattatgctaagcct,ttgtaggagacattatacttaaaccagcaaataataGTTtaaaaattacagaagaggttggccacacagatctaatggctgcttatgtagacaattctagtcttactattaagaaacctaatgaattatctagagtattaggtttgaaaacccttgctactCatggtttagctgctgttaatagTgtccctt,tgagtgtaatgtgaaaactaccgaag,aggcttagcataattagctatagtatccc -olivar-ref,olivar-ref_34,2,cccttgctactCatggtttagct,aaaatttaccgacactcttaacagtattct,6627,6650,6863,6893,cccttgctactCatggtttagctgctgttaatagTgtcccttgggatactatagctaattatgctaagccttttcttaacaaagttgttagtacaactactaacatagttacacggtgtttaaaccgtgtttgtactaattatatgccttatttctttactttattgctacaattgtgtacttttactagaagtacaaattctagaattaaagcatctatgccgactactatagcaaagaatactgttaagagtgtcggtaaatttt,gctgttaatagTgtcccttgggatactatagctaattatgctaagccttttcttaacaaagttgttagtacaactactaacatagttacacggtgtttaaaccgtgtttgtactaattatatgccttatttctttactttattgctacaattgtgtacttttactagaagtacaaattctagaattaaagcatctatgccgactactatagcaa,cccttgctactCatggtttagct,aaaatttaccgacactcttaacagtattct -olivar-ref,olivar-ref_35,1,gtacaactactaacatagttacacggtg,acattagtagagttcaaatagccttctct,6717,6745,7063,7092,gtacaactactaacatagttacacggtgtttaaaccgtgtttgtactaattatatgccttatttctttactttattgctacaattgtgtacttttactagaagtacaaattctagaattaaagcatctatgccgactactatagcaaagaatactgttaagagtgtcggtaaattttgtctagaggcttcatttaattatttgaagtcacctaatttttctaaactgataaatattataatttggtttttactattaagtgtttgcctaggttctttaatctactcaaccgctgctttaggtgttttaatgtctaatttaggcatgccttcttactgtactggttacagagaaggctatttgaactctactaatgt,tttaaaccgtgtttgtactaattatatgccttatttctttactttattgctacaattgtgtacttttactagaagtacaaattctagaattaaagcatctatgccgactactatagcaaagaatactgttaagagtgtcggtaaattttgtctagaggcttcatttaattatttgaagtcacctaatttttctaaactgataaatattataatttggtttttactattaagtgtttgcctaggttctttaatctactcaaccgctgctttaggtgttttaatgtctaatttaggcatgccttcttactgtactggttac,gtacaactactaacatagttacacggtg,acattagtagagttcaaatagccttctct -olivar-ref,olivar-ref_36,2,aggttctttaatctactcaaccgct,tgcatgattgcagccaatcc,6985,7010,7288,7308,aggttctttaatctactcaaccgctgctttaggtgttttaatgtctaatttaggcatgccttcttactgtactggttacagagaaggctatttgaactctactaatgtcactattgcaacctactgtactggttctataCcttgtagtgtttgtcttagtggtttagattctttagacacctatccttctttagaaactatacaaattaccatttcatcttttaaatgggatttaactgcttttggcttagttgcagagtggtttttggcatatattcttttcactaggtttttctatgtacttggattggctgcaatcatgca,gctttaggtgttttaatgtctaatttaggcatgccttcttactgtactggttacagagaaggctatttgaactctactaatgtcactattgcaacctactgtactggttctataCcttgtagtgtttgtcttagtggtttagattctttagacacctatccttctttagaaactatacaaattaccatttcatcttttaaatgggatttaactgcttttggcttagttgcagagtggtttttggcatatattcttttcactaggtttttctatgtactt,aggttctttaatctactcaaccgct,tgcatgattgcagccaatcc -olivar-ref,olivar-ref_37,1,gcagagtggtttttggcatatattctttt,tgtacattcgactcttgttgctctatta,7238,7267,7509,7537,gcagagtggtttttggcatatattcttttcactaggtttttctatgtacttggattggctgcaatcatgcaattgtttttcagctattttgcagtacattttattagtaattcttggcttatgtggttaataattaatcttgtacaaatggccccgatttcagctatggttagaatgtacatcttctttgcatcattttattatgtatggaaaagttatgtgcatgttgtagacggttgtaattcatcaacttgtatgatgtgttacaaacgtaatagagcaacaagagtcgaatgtaca,cactaggtttttctatgtacttggattggctgcaatcatgcaattgtttttcagctattttgcagtacattttattagtaattcttggcttatgtggttaataattaatcttgtacaaatggccccgatttcagctatggttagaatgtacatcttctttgcatcattttattatgtatggaaaagttatgtgcatgttgtagacggttgtaattcatcaacttgtatgatgtgttacaaacg,gcagagtggtttttggcatatattctttt,tgtacattcgactcttgttgctctatta -olivar-ref,olivar-ref_38,2,gttgtagacggttgtaattcatcaact,ctatcaacgatgtaagaagactggtc,7463,7490,7717,7743,gttgtagacggttgtaattcatcaacttgtatgatgtgttacaaacgtaatagagcaacaagagtcgaatgtacaactattgttaatggtgttagaaggtccttttatgtctatgctaatggaggtaaaggcttttgcaaactacacaattggaattgtgttaattgtgatacattctgtgctggtagtacatttattagtgatgaagttgcgagagacttgtcactacagtttaaaagaccaataaatcctactgaccagtcttcttacatcgttgatag,tgtatgatgtgttacaaacgtaatagagcaacaagagtcgaatgtacaactattgttaatggtgttagaaggtccttttatgtctatgctaatggaggtaaaggcttttgcaaactacacaattggaattgtgttaattgtgatacattctgtgctggtagtacatttattagtgatgaagttgcgagagacttgtcactacagtttaaaagaccaataaatcctact,gttgtagacggttgtaattcatcaact,ctatcaacgatgtaagaagactggtc -olivar-ref,olivar-ref_39,1,tctgtgctggtagtacatttattagtga,aggttgacacataagctgactgt,7638,7666,7946,7969,tctgtgctggtagtacatttattagtgatgaagttgcgagagacttgtcactacagtttaaaagaccaataaatcctactgaccagtcttcttacatcgttgatagtgttacagtgaagaatggttccatccatctttactttgataaagctggtcaaaagacttatgaaagacattctctctctcattttgttaacttagacaacctgagagCtaataacactaaaggttcattgcctattaatgttatagtttttgatggtaaatcaaaatgtgaagaatcatctgCaaaatcagcgtctgtttactacagtcagcttatgtgtcaacct,tgaagttgcgagagacttgtcactacagtttaaaagaccaataaatcctactgaccagtcttcttacatcgttgatagtgttacagtgaagaatggttccatccatctttactttgataaagctggtcaaaagacttatgaaagacattctctctctcattttgttaacttagacaacctgagagCtaataacactaaaggttcattgcctattaatgttatagtttttgatggtaaatcaaaatgtgaagaatcatctgCaaaatcagcgtctgtttact,tctgtgctggtagtacatttattagtga,aggttgacacataagctgactgt -olivar-ref,olivar-ref_40,2,tgataaagctggtcaaaagacttatgaa,cattgtctaaggacacattctttgca,7780,7808,8124,8150,tgataaagctggtcaaaagacttatgaaagacattctctctctcattttgttaacttagacaacctgagagCtaataacactaaaggttcattgcctattaatgttatagtttttgatggtaaatcaaaatgtgaagaatcatctgCaaaatcagcgtctgtttactacagtcagcttatgtgtcaacctatactgttactagatcaggcattagtgtctgatgttggtgatagtgcggaagttgcagttaaaatgtttgatgcttacgttaatacgttttcatcaacttttaacgtaccaatggaaaaactcaaaacactagttgcaactgcagaagctgaacttgcaaagaatgtgtccttagacaatg,agacattctctctctcattttgttaacttagacaacctgagagCtaataacactaaaggttcattgcctattaatgttatagtttttgatggtaaatcaaaatgtgaagaatcatctgCaaaatcagcgtctgtttactacagtcagcttatgtgtcaacctatactgttactagatcaggcattagtgtctgatgttggtgatagtgcggaagttgcagttaaaatgtttgatgcttacgttaatacgttttcatcaacttttaacgtaccaatggaaaaactcaaaacactagttgcaactgcagaagctgaact,tgataaagctggtcaaaagacttatgaa,cattgtctaaggacacattctttgca -olivar-ref,olivar-ref_41,1,gtgatagtgcggaagttgcag,gactttttgctacctgcgcat,8007,8028,8363,8384,gtgatagtgcggaagttgcagttaaaatgtttgatgcttacgttaatacgttttcatcaacttttaacgtaccaatggaaaaactcaaaacactagttgcaactgcagaagctgaacttgcaaagaatgtgtccttagacaatgtcttatctacttttatttcagcagctcggcaagggtttgttgattcagatgtagaaactaaagatgttgttgaatgtcttaaattgtcacatcaatctgacatagaagttactggcgatagttgtaataactatatgctcacctataacaaagttgaaaacatgacaccccgtgaccttggtgcttgtattgactgtagtgcgcgtcatattaatgcgcaggtagcaaaaagtc,ttaaaatgtttgatgcttacgttaatacgttttcatcaacttttaacgtaccaatggaaaaactcaaaacactagttgcaactgcagaagctgaacttgcaaagaatgtgtccttagacaatgtcttatctacttttatttcagcagctcggcaagggtttgttgattcagatgtagaaactaaagatgttgttgaatgtcttaaattgtcacatcaatctgacatagaagttactggcgatagttgtaataactatatgctcacctataacaaagttgaaaacatgacaccccgtgaccttggtgcttgtattgactgtagtgcgcgtcatatta,gtgatagtgcggaagttgcag,gactttttgctacctgcgcat -olivar-ref,olivar-ref_42,2,gaagttactggcgatagttgtaataactatat,caacttgtctagtagttgcacatgtc,8255,8287,8490,8516,gaagttactggcgatagttgtaataactatatgctcacctataacaaagttgaaaacatgacaccccgtgaccttggtgcttgtattgactgtagtgcgcgtcatattaatgcgcaggtagcaaaaagtcacaacattGctttgatatggaacgttaaagatttcatgtcattgtctgaacaactacgaaaacaaatacgtagtgctgctaaaaagaataacttaccttttaagttgacatgtgcaactactagacaagttg,gctcacctataacaaagttgaaaacatgacaccccgtgaccttggtgcttgtattgactgtagtgcgcgtcatattaatgcgcaggtagcaaaaagtcacaacattGctttgatatggaacgttaaagatttcatgtcattgtctgaacaactacgaaaacaaatacgtagtgctgctaaaaagaataacttaccttttaagtt,gaagttactggcgatagttgtaataactatat,caacttgtctagtagttgcacatgtc -olivar-ref,olivar-ref_43,1,aactacgaaaacaaatacgtagtgct,cacgagtgacaccaccatcaata,8436,8462,8697,8720,aactacgaaaacaaatacgtagtgctgctaaaaagaataacttaccttttaagttgacatgtgcaactactagacaagttgttaatgttgtaacaacaaagatagcacttaagggtggtaaaattgttaataattggttgaagcagttaattaaagttacacttgtgttcctttttgttgctgctattttctatttaataacacctgttcatgtcatgtctaaacatactgacttttcaagtgaaatcataggatacaaggctattgatggtggtgtcactcgtg,gctaaaaagaataacttaccttttaagttgacatgtgcaactactagacaagttgttaatgttgtaacaacaaagatagcacttaagggtggtaaaattgttaataattggttgaagcagttaattaaagttacacttgtgttcctttttgttgctgctattttctatttaataacacctgttcatgtcatgtctaaacatactgacttttcaagtgaaatcataggatacaaggc,aactacgaaaacaaatacgtagtgct,cacgagtgacaccaccatcaata -olivar-ref,olivar-ref_44,2,gtcatgtctaaacatactgacttttcaag,tgtaacagatgttaccaactgcacta,8648,8677,8931,8957,gtcatgtctaaacatactgacttttcaagtgaaatcataggatacaaggctattgatggtggtgtcactcgtgacatagcatctacagatacttgttttgctaacaaacatgctgattttgacacatggtttagccagcgtggtggtagttatactaatgacaaagcttgcccattgattgCtgcagTcataacaagagaagtgggttttgtcgtgcctggtttgcctggcacgatattacgcacaactaatggtgactttttgcatttcttacctagagtttttagtgcagttggtaacatctgttaca,tgaaatcataggatacaaggctattgatggtggtgtcactcgtgacatagcatctacagatacttgttttgctaacaaacatgctgattttgacacatggtttagccagcgtggtggtagttatactaatgacaaagcttgcccattgattgCtgcagTcataacaagagaagtgggttttgtcgtgcctggtttgcctggcacgatattacgcacaactaatggtgactttttgcatttcttacctagagtttt,gtcatgtctaaacatactgacttttcaag,tgtaacagatgttaccaactgcacta -olivar-ref,olivar-ref_45,1,gggttttgtcgtgcctggtt,cgtgtgtcagggcgtaaact,8851,8871,9103,9123,gggttttgtcgtgcctggtttgcctggcacgatattacgcacaactaatggtgactttttgcatttcttacctagagtttttagtgcagttggtaacatctgttacacaccatcaaaacttatagagtacactgaCtttgcaacatcagcttgtgttttggctgctgaatgtacaatttttaaagatgcttctggtaagccaGtaccatattgttatgataccaatgtactagaaggttctgttgcttatgaaagtttacgccctgacacacg,tgcctggcacgatattacgcacaactaatggtgactttttgcatttcttacctagagtttttagtgcagttggtaacatctgttacacaccatcaaaacttatagagtacactgaCtttgcaacatcagcttgtgttttggctgctgaatgtacaatttttaaagatgcttctggtaagccaGtaccatattgttatgataccaatgtactagaaggttctgttgcttatgaa,gggttttgtcgtgcctggtt,cgtgtgtcagggcgtaaact -olivar-ref,olivar-ref_46,2,gctgctgaatgtacaatttttaaagatgc,tgtaataatcattgttaagtacccatctacc,9011,9040,9268,9299,gctgctgaatgtacaatttttaaagatgcttctggtaagccaGtaccatattgttatgataccaatgtactagaaggttctgttgcttatgaaagtttacgccctgacacacgttatgtgctcatggatggctctattattcaatttcctaacacctaccttgaaggttctgttagagtggtaacaacttttgattctgagtactgtaggcacggcacttgtgaaagatcagaagctggtgtttgtgtatctactagtggtagatgggtacttaacaatgattattaca,ttctggtaagccaGtaccatattgttatgataccaatgtactagaaggttctgttgcttatgaaagtttacgccctgacacacgttatgtgctcatggatggctctattattcaatttcctaacacctaccttgaaggttctgttagagtggtaacaacttttgattctgagtactgtaggcacggcacttgtgaaagatcagaagctggtgtttgtgtatctactagt,gctgctgaatgtacaatttttaaagatgc,tgtaataatcattgttaagtacccatctacc -olivar-ref,olivar-ref_47,1,aacacctaccttgaaggttctgtta,ttctaaacctcataaaatagtaggcaagg,9161,9186,9441,9470,aacacctaccttgaaggttctgttagagtggtaacaacttttgattctgagtactgtaggcacggcacttgtgaaagatcagaagctggtgtttgtgtatctactagtggtagatgggtacttaacaatgattattacagatctttaccaggagttttctgtggtgtagatgctgtaaatttaCttactaatatgtttacaccactaattcaacctattggtgctttggacatatcagcatctatagtagctggtggtattgtAgctatcgtagtaacatgccttgcctactattttatgaggtttagaa,gagtggtaacaacttttgattctgagtactgtaggcacggcacttgtgaaagatcagaagctggtgtttgtgtatctactagtggtagatgggtacttaacaatgattattacagatctttaccaggagttttctgtggtgtagatgctgtaaatttaCttactaatatgtttacaccactaattcaacctattggtgctttggacatatcagcatctatagtagctggtggtattgtAgctatcgtagtaacatg,aacacctaccttgaaggttctgtta,ttctaaacctcataaaatagtaggcaagg -olivar-ref,olivar-ref_48,2,cagcatctatagtagctggtggt,cattaaagactacacgtctctttaggtaat,9396,9419,9740,9770,cagcatctatagtagctggtggtattgtAgctatcgtagtaacatgccttgcctactattttatgaggtttagaagagcttttggtgaatacagtcatgtagttgcctttaatactttactattccttatgtcattcaCtgtactctgtttaacaccagtttaCtcattcttacctggtgtttattctgttatttacttgtacttgacattttatcttactaatgatgtttcttttttagcacatattcagtggatggttatgttcacacctttagtacctttctggataacaattgcttatatcatttgtatttccacaaagcatttctattggttctttagtaattacctaaagagacgtgtagtctttaatg,attgtAgctatcgtagtaacatgccttgcctactattttatgaggtttagaagagcttttggtgaatacagtcatgtagttgcctttaatactttactattccttatgtcattcaCtgtactctgtttaacaccagtttaCtcattcttacctggtgtttattctgttatttacttgtacttgacattttatcttactaatgatgtttcttttttagcacatattcagtggatggttatgttcacacctttagtacctttctggataacaattgcttatatcatttgtatttccacaaagcatttctattggttctttagta,cagcatctatagtagctggtggt,cattaaagactacacgtctctttaggtaat -olivar-ref,olivar-ref_49,1,attcagtggatggttatgttcacac,tgacaacaagcagcttctctgt,9641,9666,9941,9963,attcagtggatggttatgttcacacctttagtacctttctggataacaattgcttatatcatttgtatttccacaaagcatttctattggttctttagtaattacctaaagagacgtgtagtctttaatggtgtttcctttagtacttttgaagaagctgcgctgtgcacctttttgttaaataaagaaatgtatctaaagttgcgtagtgatgtgctattacctCttacgcaatataatagatacttagCtctttataataagtacaagtattttagtggagcaatggatacaactagctacagagaagctgcttgttgtca,ctttagtacctttctggataacaattgcttatatcatttgtatttccacaaagcatttctattggttctttagtaattacctaaagagacgtgtagtctttaatggtgtttcctttagtacttttgaagaagctgcgctgtgcacctttttgttaaataaagaaatgtatctaaagttgcgtagtgatgtgctattacctCttacgcaatataatagatacttagCtctttataataagtacaagtattttagtggagcaatggatacaactagct,attcagtggatggttatgttcacac,tgacaacaagcagcttctctgt -olivar-ref,olivar-ref_50,2,agtacaagtattttagtggagcaatgg,acagtaaactacgtcatcaagccaa,9903,9930,10143,10168,agtacaagtattttagtggagcaatggatacaactagctacagagaagctgcttgttgtcatctcgcaaaggctctcaatgacttcagtaactcaggttctgatgttctttaccaaccaccacaaaCctctatcacctcagctgttttgcagagtggttttagaaaaatggcattcccatctggtaaagttgagggttgtatggtacaagtaacttgtggtacaactacactTaacggtctttggcttgatgacgtagtttactgt,atacaactagctacagagaagctgcttgttgtcatctcgcaaaggctctcaatgacttcagtaactcaggttctgatgttctttaccaaccaccacaaaCctctatcacctcagctgttttgcagagtggttttagaaaaatggcattcccatctggtaaagttgagggttgtatggtacaagtaacttgtggtacaactacactTaacggtct,agtacaagtattttagtggagcaatgg,acagtaaactacgtcatcaagccaa -olivar-ref,olivar-ref_51,1,tggcattcccatctggtaaagt,tcctggttgaatgcgaacaaac,10071,10093,10359,10381,tggcattcccatctggtaaagttgagggttgtatggtacaagtaacttgtggtacaactacactTaacggtctttggcttgatgacgtagtttactgtccaagacatgtgatctgcacctctgaagaCatgcttaaccctaattatgaagatttactcattcgtaagtctaatcataatttcttggtacaggctggtaatgttcaactcagggttattggacattctatgcaaaattgtgtacttaagcttaAggttgatacagccaatcctaagacacctaagtataagtttgttcgcattcaaccagga,tgagggttgtatggtacaagtaacttgtggtacaactacactTaacggtctttggcttgatgacgtagtttactgtccaagacatgtgatctgcacctctgaagaCatgcttaaccctaattatgaagatttactcattcgtaagtctaatcataatttcttggtacaggctggtaatgttcaactcagggttattggacattctatgcaaaattgtgtacttaagcttaAggttgatacagccaatcctaagacacctaagtataa,tggcattcccatctggtaaagt,tcctggttgaatgcgaacaaac -olivar-ref,olivar-ref_52,2,cttggtacaggctggtaatgttc,actgtaatagttgtgtccgtaccag,10252,10275,10634,10659,cttggtacaggctggtaatgttcaactcagggttattggacattctatgcaaaattgtgtacttaagcttaAggttgatacagccaatcctaagacacctaagtataagtttgttcgcattcaaccaggacagactttttcagtgttagcttgttacaatggttcaccatctggtgtttaccaatgtgctatgagGcCcaatttcactattaagggttcattccttaatggttcatgtggtagtgttggttttaacatagattatgactgtgtctctttttgttacatgcaccatatggaattaccaactggagttcatgctggcacagacttagaaggtaacttttatggaccttttgttgacaggcaaacagcacaagcagctggtacggacacaactattacagt,aactcagggttattggacattctatgcaaaattgtgtacttaagcttaAggttgatacagccaatcctaagacacctaagtataagtttgttcgcattcaaccaggacagactttttcagtgttagcttgttacaatggttcaccatctggtgtttaccaatgtgctatgagGcCcaatttcactattaagggttcattccttaatggttcatgtggtagtgttggttttaacatagattatgactgtgtctctttttgttacatgcaccatatggaattaccaactggagttcatgctggcacagacttagaaggtaacttttatggaccttttgttgacaggcaaacagcacaagcag,cttggtacaggctggtaatgttc,actgtaatagttgtgtccgtaccag -olivar-ref,olivar-ref_53,1,caactggagttcatgctggc,agtatgtcaacatggtcttgtgttag,10557,10577,10777,10803,caactggagttcatgctggcacagacttagaaggtaacttttatggaccttttgttgacaggcaaacagcacaagcagctggtacggacacaactattacagttaatgttttagcttggttgtacgctgctgttataaatggagacaggtggtttctcaatcgatttaccacaactcttaatgactttaaccttgtggctatgaagtacaattatgaacctctaacacaagaccatgttgacatact,acagacttagaaggtaacttttatggaccttttgttgacaggcaaacagcacaagcagctggtacggacacaactattacagttaatgttttagcttggttgtacgctgctgttataaatggagacaggtggtttctcaatcgatttaccacaactcttaatgactttaaccttgtggctatgaagtacaattatgaacct,caactggagttcatgctggc,agtatgtcaacatggtcttgtgttag -olivar-ref,olivar-ref_54,2,tcgatttaccacaactcttaatgactttaa,gtgagtaacaaccagtggtgtg,10717,10747,11000,11022,tcgatttaccacaactcttaatgactttaaccttgtggctatgaagtacaattatgaacctctaacacaagaccatgttgacatactaggacctctttctgctcaaactggaattgccgttttagatatgtgtgcttcattaaaagaattactgcaaaatggtatgaatggacgtaccatattgggtagtgctttattagaagatgaatttacaccttttgatgttgttagacaatgctcaggtgttactttccaaagtgCagtgaaaagaacaatcaagggtacacaccactggttgttactcac,ccttgtggctatgaagtacaattatgaacctctaacacaagaccatgttgacatactaggacctctttctgctcaaactggaattgccgttttagatatgtgtgcttcattaaaagaattactgcaaaatggtatgaatggacgtaccatattgggtagtgctttattagaagatgaatttacaccttttgatgttgttagacaatgctcaggtgttactttccaaagtgCagtgaaaagaacaatcaagggta,tcgatttaccacaactcttaatgactttaa,gtgagtaacaaccagtggtgtg -olivar-ref,olivar-ref_55,1,ggacgtaccatattgggtagtgc,gtcataatacgcatcacccaactag,10886,10909,11234,11259,ggacgtaccatattgggtagtgctttattagaagatgaatttacaccttttgatgttgttagacaatgctcaggtgttactttccaaagtgCagtgaaaagaacaatcaagggtacacaccactggttgttactcacaattttgacttcacttttagttttagtccagagtactcaatggtctttgttcttttttttGtatgaaaatgcctttttaccttttgctatgggtattattgctatgtctgcttttgcaatgatgtttgtcaaacataagcatgcatttctctgtttgtttttgttaccttctcttgccActgtagcttattttaatatggtctatatgcctgctagttgggtgatgcgtattatgac,tttattagaagatgaatttacaccttttgatgttgttagacaatgctcaggtgttactttccaaagtgCagtgaaaagaacaatcaagggtacacaccactggttgttactcacaattttgacttcacttttagttttagtccagagtactcaatggtctttgttcttttttttGtatgaaaatgcctttttaccttttgctatgggtattattgctatgtctgcttttgcaatgatgtttgtcaaacataagcatgcatttctctgtttgtttttgttaccttctcttgccActgtagcttattttaatatggtctatatgcctg,ggacgtaccatattgggtagtgc,gtcataatacgcatcacccaactag -olivar-ref,olivar-ref_56,2,tgtttgtcaaacataagcatgcattt,gtagttagaagtaacagagattataagagcc,11145,11171,11466,11497,tgtttgtcaaacataagcatgcatttctctgtttgtttttgttaccttctcttgccActgtagcttattttaatatggtctatatgcctgctagttgggtgatgcgtattatgacatggttggatatggttgatactaGTTTGTCTGGTTTTaagctaaaagactgtgttatgtatgcatcagctgtAgtgttactaatccttatgacagcaagaactgtgtatgatgatggtgctaggagagtgtggacacttatgaatgtcttgacactcgTttataaagtttattatggtaatgctttagatcaagccAtttccatgtgggctcttataatctctgttacttctaactac,ctctgtttgtttttgttaccttctcttgccActgtagcttattttaatatggtctatatgcctgctagttgggtgatgcgtattatgacatggttggatatggttgatactaGTTTGTCTGGTTTTaagctaaaagactgtgttatgtatgcatcagctgtAgtgttactaatccttatgacagcaagaactgtgtatgatgatggtgctaggagagtgtggacacttatgaatgtcttgacactcgTttataaagtttattatggtaatgctttagatcaagccAtttccatgtg,tgtttgtcaaacataagcatgcattt,gtagttagaagtaacagagattataagagcc -olivar-ref,olivar-ref_57,1,ccttatgacagcaagaactgtgtatg,tcataaacaccaagagtcagtctaaagta,11344,11370,11671,11700,ccttatgacagcaagaactgtgtatgatgatggtgctaggagagtgtggacacttatgaatgtcttgacactcgTttataaagtttattatggtaatgctttagatcaagccAtttccatgtgggctcttataatctctgttacttctaactactcaggtgtagttacaaCtgtcatgtttttggccagaggtAttgtttttatgtgtgttgagtattGccctattttcttcataactggtaatacacttcagtgtataatgctagtttattgtttcttaggctatttttgtacttgttactttggcctcttttgtttactcaaccgctactttagactgactcttggtgtttatga,atgatggtgctaggagagtgtggacacttatgaatgtcttgacactcgTttataaagtttattatggtaatgctttagatcaagccAtttccatgtgggctcttataatctctgttacttctaactactcaggtgtagttacaaCtgtcatgtttttggccagaggtAttgtttttatgtgtgttgagtattGccctattttcttcataactggtaatacacttcagtgtataatgctagtttattgtttcttaggctatttttgtacttgttactttggcctcttttgtttactcaaccgc,ccttatgacagcaagaactgtgtatg,tcataaacaccaagagtcagtctaaagta -olivar-ref,olivar-ref_58,2,acacttcagtgtataatgctagtttattgt,gcaaaactgagagtaagactactgatgt,11588,11618,11866,11894,acacttcagtgtataatgctagtttattgtttcttaggctatttttgtacttgttactttggcctcttttgtttactcaaccgctactttagactgactcttggtgtttatgattacttagtttctacacaggagtttagatatatgaattcacagggactactcccacccaagaatagcatagatgccttcaaactcaacattaaattgttgggtgttggtggcaaaccttgtatcaaagtagccactgtacagtctaaaatgtcagatgtaaagtgcacatcagtagtcttactctcagttttgc,ttcttaggctatttttgtacttgttactttggcctcttttgtttactcaaccgctactttagactgactcttggtgtttatgattacttagtttctacacaggagtttagatatatgaattcacagggactactcccacccaagaatagcatagatgccttcaaactcaacattaaattgttgggtgttggtggcaaaccttgtatcaaagtagccactgtacagtctaaaatgtcagatgtaaagtgc,acacttcagtgtataatgctagtttattgt,gcaaaactgagagtaagactactgatgt -olivar-ref,olivar-ref_59,1,accttgtatcaaagtagccactgt,agcttgtaaggttgccctgt,11815,11839,12074,12094,accttgtatcaaagtagccactgtacagtctaaaatgtcagatgtaaagtgcacatcagtagtcttactctcagttttgcaacaactcagagtagaatcatcatctaaattgtgggctcaatgtgtccagttacaCaatgacattctcttagctaaagatactactgaagcctttgaaaaaatggtttcactactttctgttttgctttccatgcagggtgctgtagacataaaCaagctttgtgaagaaatgctggacaacagggcaaccttacaagct,acagtctaaaatgtcagatgtaaagtgcacatcagtagtcttactctcagttttgcaacaactcagagtagaatcatcatctaaattgtgggctcaatgtgtccagttacaCaatgacattctcttagctaaagatactactgaagcctttgaaaaaatggtttcactactttctgttttgctttccatgcagggtgctgtagacataaaCaagctttgtgaagaaatgctggaca,accttgtatcaaagtagccactgt,agcttgtaaggttgccctgt -olivar-ref,olivar-ref_60,2,catcatctaaattgtgggctcaatgt,gccatcttttccaacttacgttgc,11913,11939,12255,12279,catcatctaaattgtgggctcaatgtgtccagttacaCaatgacattctcttagctaaagatactactgaagcctttgaaaaaatggtttcactactttctgttttgctttccatgcagggtgctgtagacataaaCaagctttgtgaagaaatgctggacaacagggcaaccttacaagctatagcctcagagtttagttcccttccatcatatgcagcttttgctactgctcaagaagcttatgagcaggctgttgctaatggtgattctgaagttgttcttaaaaagttgaagaagtctttgaatgtggctaaatctgaatttgaccgtgatgcagccatgcaacgtaagttggaaaagatggc,gtccagttacaCaatgacattctcttagctaaagatactactgaagcctttgaaaaaatggtttcactactttctgttttgctttccatgcagggtgctgtagacataaaCaagctttgtgaagaaatgctggacaacagggcaaccttacaagctatagcctcagagtttagttcccttccatcatatgcagcttttgctactgctcaagaagcttatgagcaggctgttgctaatggtgattctgaagttgttcttaaaaagttgaagaagtctttgaatgtggctaaatctgaatttgaccgtgatgcagccat,catcatctaaattgtgggctcaatgt,gccatcttttccaacttacgttgc -olivar-ref,olivar-ref_61,1,gagcaggctgttgctaatgg,ttggctgctgttgtaagaggtat,12158,12178,12448,12471,gagcaggctgttgctaatggtgattctgaagttgttcttaaaaagttgaagaagtctttgaatgtggctaaatctgaatttgaccgtgatgcagccatgcaacgtaagttggaaaagatggctgatcaagctatgacccaaatgtataaacaggctagatctgaggacaagagggcaaaagttactagtgctatgcagacaatgcttttcactatgcttagaaagttggataatgatgcactcaacaacattatcaacaatgcaagagatggttgtgttcccttgaacataatacctcttacaacagcagccaa,tgattctgaagttgttcttaaaaagttgaagaagtctttgaatgtggctaaatctgaatttgaccgtgatgcagccatgcaacgtaagttggaaaagatggctgatcaagctatgacccaaatgtataaacaggctagatctgaggacaagagggcaaaagttactagtgctatgcagacaatgcttttcactatgcttagaaagttggataatgatgcactcaacaacattatcaacaatgcaagagatggttgtgttcccttgaacata,gagcaggctgttgctaatgg,ttggctgctgttgtaagaggtat -olivar-ref,olivar-ref_62,2,caggctagatctgaggacaagag,gaggccatgctaaattaggtgaatt,12308,12331,12616,12641,caggctagatctgaggacaagagggcaaaagttactagtgctatgcagacaatgcttttcactatgcttagaaagttggataatgatgcactcaacaacattatcaacaatgcaagagatggttgtgttcccttgaacataatacctcttacaacagcagccaaactaatggttgtcataccagactataacacatataaaaatacgtgtgatggtacaacatttacttatgcatcagcattgtgggaaatccaacaggttgtagatgcagatagtaaaattgttcaacttagtgaaattagtatggacaattcacctaatttagcatggcctc,ggcaaaagttactagtgctatgcagacaatgcttttcactatgcttagaaagttggataatgatgcactcaacaacattatcaacaatgcaagagatggttgtgttcccttgaacataatacctcttacaacagcagccaaactaatggttgtcataccagactataacacatataaaaatacgtgtgatggtacaacatttacttatgcatcagcattgtgggaaatccaacaggttgtagatgcagatagtaaaattgttcaacttagtgaaattagtatggac,caggctagatctgaggacaagag,gaggccatgctaaattaggtgaatt -olivar-ref,olivar-ref_63,1,gcatcagcattgtgggaaatcc,agtaagctaacgcattgtcatcag,12539,12561,12755,12779,gcatcagcattgtgggaaatccaacaggttgtagatgcagatagtaaaattgttcaacttagtgaaattagtatggacaattcacctaatttagcatggcctcttattgtaacagctttaagggccaattctgctgtcaaattacagaataatgagcttagtcctgttgcactacgacagatgtcttgtgctgccggtactacacaaactgcttgcactgatgacaatgcgttagcttact,aacaggttgtagatgcagatagtaaaattgttcaacttagtgaaattagtatggacaattcacctaatttagcatggcctcttattgtaacagctttaagggccaattctgctgtcaaattacagaataatgagcttagtcctgttgcactacgacagatgtcttgtgctgccggtactacacaaactgcttgca,gcatcagcattgtgggaaatcc,agtaagctaacgcattgtcatcag -olivar-ref,olivar-ref_64,2,gtcttgtgctgccggtacta,ggcaggcacttctgttgc,12721,12741,13033,13051,gtcttgtgctgccggtactacacaaactgcttgcactgatgacaatgcgttagcttactacaacacaacaaagggaggtaGgtttgtacttgcactgttatccgatttacaggatttgaaatgggctagattccctaagagtgatggaactggtactatCtatacagaactggaaccaccttgtaggtttgttacagacacacctaaaggtcctaaagtgaagtaTttatactttattaaaggattaaacaacctaaatagaggtatggtacttggtagtttagctgccacagtacgtCtacaagctggtaatgcaacagaagtgcctgcc,cacaaactgcttgcactgatgacaatgcgttagcttactacaacacaacaaagggaggtaGgtttgtacttgcactgttatccgatttacaggatttgaaatgggctagattccctaagagtgatggaactggtactatCtatacagaactggaaccaccttgtaggtttgttacagacacacctaaaggtcctaaagtgaagtaTttatactttattaaaggattaaacaacctaaatagaggtatggtacttggtagtttagctgccacagtacgtCtacaagctggtaat,gtcttgtgctgccggtacta,ggcaggcacttctgttgc -olivar-ref,olivar-ref_65,1,agattccctaagagtgatggaactg,attggttgtcccccactagc,12848,12873,13117,13137,agattccctaagagtgatggaactggtactatCtatacagaactggaaccaccttgtaggtttgttacagacacacctaaaggtcctaaagtgaagtaTttatactttattaaaggattaaacaacctaaatagaggtatggtacttggtagtttagctgccacagtacgtCtacaagctggtaatgcaacagaagtgcctgccaattcaactgtattatctttctgtgcttttgctgtagatgctgctaaagcttacaaagattatctagctagtgggggacaaccaat,gtactatCtatacagaactggaaccaccttgtaggtttgttacagacacacctaaaggtcctaaagtgaagtaTttatactttattaaaggattaaacaacctaaatagaggtatggtacttggtagtttagctgccacagtacgtCtacaagctggtaatgcaacagaagtgcctgccaattcaactgtattatctttctgtgcttttgctgtagatgctgctaaagcttacaaagattatcta,agattccctaagagtgatggaactg,attggttgtcccccactagc -olivar-ref,olivar-ref_66,2,gtagatgctgctaaagcttacaaaga,ccgcaaacccgtttaaaaacga,13085,13111,13456,13478,gtagatgctgctaaagcttacaaagattatctagctagtgggggacaaccaatcactaattgtgttaagatgttgtgtacacacactggtactggtcaggcaataacagtTacaccggaagccaatatggatcaagaatcctttggtggtgcatcgtgttgtctgtactgccgttgccacatagatcatccaaatcctaaaggattttgtgacttaaaaggtaagtatgtacaaatacctacaacttgtgctaatgaccctgtgggttttacacttaaaaacacagtctgtaccgtctgcggtatgtggaaaggttatggctgtagttgtgatcaactccgcgaacccatgcttcagtcagctgatgcacaatcgtttttaaacgggtttgcgg,ttatctagctagtgggggacaaccaatcactaattgtgttaagatgttgtgtacacacactggtactggtcaggcaataacagtTacaccggaagccaatatggatcaagaatcctttggtggtgcatcgtgttgtctgtactgccgttgccacatagatcatccaaatcctaaaggattttgtgacttaaaaggtaagtatgtacaaatacctacaacttgtgctaatgaccctgtgggttttacacttaaaaacacagtctgtaccgtctgcggtatgtggaaaggttatggctgtagttgtgatcaactccgcgaacccatgcttcagtcagctgatgcacaa,gtagatgctgctaaagcttacaaaga,ccgcaaacccgtttaaaaacga -olivar-ref,olivar-ref_67,1,tgtactgccgttgccacat,tttcttggaagcgacaacaattagt,13248,13267,13590,13615,tgtactgccgttgccacatagatcatccaaatcctaaaggattttgtgacttaaaaggtaagtatgtacaaatacctacaacttgtgctaatgaccctgtgggttttacacttaaaaacacagtctgtaccgtctgcggtatgtggaaaggttatggctgtagttgtgatcaactccgcgaacccatgcttcagtcagctgatgcacaatcgtttttaaacgggtttgcggtgtAagtgcagcccgtcttacaccgtgcggcacaggcactagtactgatgtcgtatacagggcttttgacatctacaatgataaagtagctggttttgctaaattcctaaaaactaattgttgtcgcttccaagaaa,agatcatccaaatcctaaaggattttgtgacttaaaaggtaagtatgtacaaatacctacaacttgtgctaatgaccctgtgggttttacacttaaaaacacagtctgtaccgtctgcggtatgtggaaaggttatggctgtagttgtgatcaactccgcgaacccatgcttcagtcagctgatgcacaatcgtttttaaacgggtttgcggtgtAagtgcagcccgtcttacaccgtgcggcacaggcactagtactgatgtcgtatacagggcttttgacatctacaatgataaagtagctggttttgctaaattcctaaaa,tgtactgccgttgccacat,tttcttggaagcgacaacaattagt -olivar-ref,olivar-ref_68,2,cgtgcggcacaggca,ctgccattgtgtatttagtaagacgtt,13502,13517,13789,13816,cgtgcggcacaggcactagtactgatgtcgtatacagggcttttgacatctacaatgataaagtagctggttttgctaaattcctaaaaactaattgttgtcgcttccaagaaaaggacgaagatgacaatttaattgattcttactttgtagttaagagacacactttctctaactaccaacatgaagaaacaatttataatttacttaaggattgtccagctgttgctaaacatgacttctttaagtttagaatagacggtgacatggtaccacatatatcacgtcaacgtcttactaaatacacaatggcag,ctagtactgatgtcgtatacagggcttttgacatctacaatgataaagtagctggttttgctaaattcctaaaaactaattgttgtcgcttccaagaaaaggacgaagatgacaatttaattgattcttactttgtagttaagagacacactttctctaactaccaacatgaagaaacaatttataatttacttaaggattgtccagctgttgctaaacatgacttctttaagtttagaatagacggtgacatggtaccacatatatcacgtc,cgtgcggcacaggca,ctgccattgtgtatttagtaagacgtt -olivar-ref,olivar-ref_69,1,gattcttactttgtagttaagagacacact,acgttcacctaagttggcgt,13639,13669,13963,13983,gattcttactttgtagttaagagacacactttctctaactaccaacatgaagaaacaatttataatttacttaaggattgtccagctgttgctaaacatgacttctttaagtttagaatagacggtgacatggtaccacatatatcacgtcaacgtcttactaaatacacaatggcagacctcgtctatgctttaaggcattttgatgaaggtaattgtgacacattaaaagaaatacttgtcacatacaattgttgtgatgatgattatttcaataaaaaggactggtatgattttgtagaaaacccagatatattacgcgtatacgccaacttaggtgaacgt,ttctctaactaccaacatgaagaaacaatttataatttacttaaggattgtccagctgttgctaaacatgacttctttaagtttagaatagacggtgacatggtaccacatatatcacgtcaacgtcttactaaatacacaatggcagacctcgtctatgctttaaggcattttgatgaaggtaattgtgacacattaaaagaaatacttgtcacatacaattgttgtgatgatgattatttcaataaaaaggactggtatgattttgtagaaaacccagatatattacgcgtat,gattcttactttgtagttaagagacacact,acgttcacctaagttggcgt -olivar-ref,olivar-ref_70,2,gatgaaggtaattgtgacacattaaaagaaat,tccactacctggcgtggt,13843,13875,14112,14130,gatgaaggtaattgtgacacattaaaagaaatacttgtcacatacaattgttgtgatgatgattatttcaataaaaaggactggtatgattttgtagaaaacccagatatattacgcgtatacgccaacttaggtgaacgtgtacgccaagctttgttaaaaacagtacaaTtctgtgatgccatgcGaaatgctggtattgttggtgtactgacattagataatcaagatctcaatggtaactggtatgatttcggtgatttcatacaaaccacgccaggtagtgga,acttgtcacatacaattgttgtgatgatgattatttcaataaaaaggactggtatgattttgtagaaaacccagatatattacgcgtatacgccaacttaggtgaacgtgtacgccaagctttgttaaaaacagtacaaTtctgtgatgccatgcGaaatgctggtattgttggtgtactgacattagataatcaagatctcaatggtaactggtatgatttcggtgatttcatacaa,gatgaaggtaattgtgacacattaaaagaaat,tccactacctggcgtggt -olivar-ref,olivar-ref_71,1,tgttggtgtactgacattagataatcaag,tgcagaatgcatctgtcatcca,14043,14072,14344,14366,tgttggtgtactgacattagataatcaagatctcaatggtaactggtatgatttcggtgatttcatacaaaccacgccaggtagtggagttcctgttgtagattcttattattcattgttaatgcctatattaaccttgaccagggctttaactgcagagtcacatgttgacactgacttaacaaagccttacattaagtgggatttgttaaaatatgacttcacggaagagaggttaaaactctttgaccgttattttaaatattgggatcagacataccacccaaattgtgttaactgtttggatgacagatgcattctgca,atctcaatggtaactggtatgatttcggtgatttcatacaaaccacgccaggtagtggagttcctgttgtagattcttattattcattgttaatgcctatattaaccttgaccagggctttaactgcagagtcacatgttgacactgacttaacaaagccttacattaagtgggatttgttaaaatatgacttcacggaagagaggttaaaactctttgaccgttattttaaatattgggatcagacataccacccaaattgtgttaactgtt,tgttggtgtactgacattagataatcaag,tgcagaatgcatctgtcatcca -olivar-ref,olivar-ref_72,2,gttgacactgacttaacaaagcctta,cgtgcatagcagggtcagc,14209,14235,14565,14584,gttgacactgacttaacaaagccttacattaagtgggatttgttaaaatatgacttcacggaagagaggttaaaactctttgaccgttattttaaatattgggatcagacataccacccaaattgtgttaactgtttggatgacagatgcattctgcattgtgcaaactttaatgttttattctctacagtgttcccacCtacaagttttggaccactagtgagaaaaatatttgttgatggtgttccatttgtagtttcaactggataccacttcagagagctaggtgttgtacataatcaggatgtaaacttacatagctctagacttagttttaaggaattacttgtgtatgctgctgaccctgctatgcacg,cattaagtgggatttgttaaaatatgacttcacggaagagaggttaaaactctttgaccgttattttaaatattgggatcagacataccacccaaattgtgttaactgtttggatgacagatgcattctgcattgtgcaaactttaatgttttattctctacagtgttcccacCtacaagttttggaccactagtgagaaaaatatttgttgatggtgttccatttgtagtttcaactggataccacttcagagagctaggtgttgtacataatcaggatgtaaacttacatagctctagacttagttttaaggaattacttgtgtatgct,gttgacactgacttaacaaagcctta,cgtgcatagcagggtcagc -olivar-ref,olivar-ref_73,1,actggataccacttcagagagcta,cacacattgttggtagattataacgatagta,14470,14494,14802,14833,actggataccacttcagagagctaggtgttgtacataatcaggatgtaaacttacatagctctagacttagttttaaggaattacttgtgtatgctgctgaccctgctatgcacgctgcttctggtaatctattactagataaacgcactacgtgcttttcagtagctgcacttactaacaatgttgcttttcaaactgtcaaacccggtaattttaacaaagacttctatgactttgctgtgtctaagggtttctttaaggaaggaagttctgttgaattaaaacacttcttctttgctcaggatggtaatgctgctatcagcgattatgactactatcgttataatctaccaacaatgtgtg,ggtgttgtacataatcaggatgtaaacttacatagctctagacttagttttaaggaattacttgtgtatgctgctgaccctgctatgcacgctgcttctggtaatctattactagataaacgcactacgtgcttttcagtagctgcacttactaacaatgttgcttttcaaactgtcaaacccggtaattttaacaaagacttctatgactttgctgtgtctaagggtttctttaaggaaggaagttctgttgaattaaaacacttcttctttgctcaggatggtaatgctgctatcagcgattatgac,actggataccacttcagagagcta,cacacattgttggtagattataacgatagta -olivar-ref,olivar-ref_74,2,aacgcactacgtgcttttcag,gcattaatacagccaccatcgtaa,14612,14633,14885,14909,aacgcactacgtgcttttcagtagctgcacttactaacaatgttgcttttcaaactgtcaaacccggtaattttaacaaagacttctatgactttgctgtgtctaagggtttctttaaggaaggaagttctgttgaattaaaacacttcttctttgctcaggatggtaatgctgctatcagcgattatgactactatcgttataatctaccaacaatgtgtgatatcagacaactactatttgtagttgaagttgttgataagtactttgattgttacgatggtggctgtattaatgc,tagctgcacttactaacaatgttgcttttcaaactgtcaaacccggtaattttaacaaagacttctatgactttgctgtgtctaagggtttctttaaggaaggaagttctgttgaattaaaacacttcttctttgctcaggatggtaatgctgctatcagcgattatgactactatcgttataatctaccaacaatgtgtgatatcagacaactactatttgtagttgaagttgttgataagtactttgattg,aacgcactacgtgcttttcag,gcattaatacagccaccatcgtaa -olivar-ref,olivar-ref_75,1,ctactatttgtagttgaagttgttgataagtac,ctacggtgcgagctctattctt,14845,14878,15090,15112,ctactatttgtagttgaagttgttgataagtactttgattgttacgatggtggctgtattaatgctaaccaagtcatcgtCaacaacctagacaaAtcagctggttttccatttaataaatggggtaaggctagactttattatgattcaatgagttatgaggatcaagatgcacttttcgcatatacaaaacgtaatgtcatccctactataactcaaatgaatcttaagtatgccattagtgcaaagaatagagctcgcaccgtag,tttgattgttacgatggtggctgtattaatgctaaccaagtcatcgtCaacaacctagacaaAtcagctggttttccatttaataaatggggtaaggctagactttattatgattcaatgagttatgaggatcaagatgcacttttcgcatatacaaaacgtaatgtcatccctactataactcaaatgaatcttaagtatgccattagtgca,ctactatttgtagttgaagttgttgataagtac,ctacggtgcgagctctattctt -olivar-ref,olivar-ref_76,2,caagatgcacttttcgcatatacaaaa,aatctatagaaacggtgtgacaagc,15010,15037,15379,15404,caagatgcacttttcgcatatacaaaacgtaatgtcatccctactataactcaaatgaatcttaagtatgccattagtgcaaagaatagagctcgcaccgtagctggtgtctctatctgtagtactatgaccaatagacagtttcatcaaaaattattgaaatcaatagccgccactagaggagctactgtagtaattggaacaagcaaattctatggtggttggcacaaCatgttaaaaactgtttatagtgatgtagaaaaccctcaccttatgggttgggattatcctaaatgtgatagagccatgcctaacatgcttagaattatggcctcacttgttcttgctcgcaaacatacaacgtgttgtagcttgtcacaccgtttctatagatt,cgtaatgtcatccctactataactcaaatgaatcttaagtatgccattagtgcaaagaatagagctcgcaccgtagctggtgtctctatctgtagtactatgaccaatagacagtttcatcaaaaattattgaaatcaatagccgccactagaggagctactgtagtaattggaacaagcaaattctatggtggttggcacaaCatgttaaaaactgtttatagtgatgtagaaaaccctcaccttatgggttgggattatcctaaatgtgatagagccatgcctaacatgcttagaattatggcctcacttgttcttgctcgcaaacatacaacgtgttgta,caagatgcacttttcgcatatacaaaa,aatctatagaaacggtgtgacaagc -olivar-ref,olivar-ref_77,1,tgggttgggattatcctaaatgtga,cttatcggcaattttgttaccatcag,15284,15309,15568,15594,tgggttgggattatcctaaatgtgatagagccatgcctaacatgcttagaattatggcctcacttgttcttgctcgcaaacatacaacgtgttgtagcttgtcacaccgtttctatagattagctaatgagtgtgctcaagtattgagtgaaatggtcatgtgtggcGgttcactatatgttaaaccaggtggaacctcatcaggagatgccacaactgcttatgctaatagtgtttTtaacatttgtcaagctgtcacggccaatgttaatgcacttttatctactgatggtaacaaaattgccgataag,tagagccatgcctaacatgcttagaattatggcctcacttgttcttgctcgcaaacatacaacgtgttgtagcttgtcacaccgtttctatagattagctaatgagtgtgctcaagtattgagtgaaatggtcatgtgtggcGgttcactatatgttaaaccaggtggaacctcatcaggagatgccacaactgcttatgctaatagtgtttTtaacatttgtcaagctgtcacggccaatgttaatgcacttttatcta,tgggttgggattatcctaaatgtga,cttatcggcaattttgttaccatcag -olivar-ref,olivar-ref_78,2,aggtggaacctcatcaggagat,ctttagtaaggtcagtctcagtccaa,15471,15493,15836,15862,aggtggaacctcatcaggagatgccacaactgcttatgctaatagtgtttTtaacatttgtcaagctgtcacggccaatgttaatgcacttttatctactgatggtaacaaaattgccgataagtatgtccgcaatttacaacacagactttatgagtgtctctatagaaatagagatgttgacacagactttgtgaatgagttttacgcatatttgcgtaaacatttctcaatgatgatactCtctgaCgatgctgttgtgtgtttcaatagcacttatgcatctcaaggtctagtggctagcataaagaactttaagtcagttctttattatcaaaacaatgtttttatgtctgaagcaaaatgttggactgagactgaccttactaaag,gccacaactgcttatgctaatagtgtttTtaacatttgtcaagctgtcacggccaatgttaatgcacttttatctactgatggtaacaaaattgccgataagtatgtccgcaatttacaacacagactttatgagtgtctctatagaaatagagatgttgacacagactttgtgaatgagttttacgcatatttgcgtaaacatttctcaatgatgatactCtctgaCgatgctgttgtgtgtttcaatagcacttatgcatctcaaggtctagtggctagcataaagaactttaagtcagttctttattatcaaaacaatgtttttatgtctgaagcaaaatg,aggtggaacctcatcaggagat,ctttagtaaggtcagtctcagtccaa -olivar-ref,olivar-ref_79,1,catatttgcgtaaacatttctcaatgatgata,gctaaagacacgaaccgttcaatc,15680,15712,16004,16028,catatttgcgtaaacatttctcaatgatgatactCtctgaCgatgctgttgtgtgtttcaatagcacttatgcatctcaaggtctagtggctagcataaagaactttaagtcagttctttattatcaaaacaatgtttttatgtctgaagcaaaatgttggactgagactgaccttactaaaggacctcatgaattttgctctcaacatacaatgctagttaaacagggtgatgattatgtgtaccttccttacccagatccatcaagaatcCtaggggccggctgttttgtagatgatatcgtaaaaacagatggtacacttatgattgaacggttcgtgtctttagc,ctCtctgaCgatgctgttgtgtgtttcaatagcacttatgcatctcaaggtctagtggctagcataaagaactttaagtcagttctttattatcaaaacaatgtttttatgtctgaagcaaaatgttggactgagactgaccttactaaaggacctcatgaattttgctctcaacatacaatgctagttaaacagggtgatgattatgtgtaccttccttacccagatccatcaagaatcCtaggggccggctgttttgtagatgatatcgtaaaaacagatggtacacttat,catatttgcgtaaacatttctcaatgatgata,gctaaagacacgaaccgttcaatc -olivar-ref,olivar-ref_80,2,agatgatatcgtaaaaacagatggtacac,gacaagactaatttatgtgatgttgatatgac,15972,16001,16335,16367,agatgatatcgtaaaaacagatggtacacttatgattgaacggttcgtgtctttagctatagatgcttacccacttactaaacatcctaatcAggagtatgctgatgtctttcatttgtacttacaatacataagaaagctacatgatgagttaacaggacacatgttagacatgtattctgttatgcttactaatgataacacttcaaggtattgggaacctgagttttatgaggctatgtacacaccgcatacagtcttacaggctgttggggcttgtgttctttgcaattcacagacttcattaagatgtggtgcttgcatacgtagaccattcttatgttgtaaatgctgttacgaccatgtcatatcaacatcacataaattagtcttgtc,ttatgattgaacggttcgtgtctttagctatagatgcttacccacttactaaacatcctaatcAggagtatgctgatgtctttcatttgtacttacaatacataagaaagctacatgatgagttaacaggacacatgttagacatgtattctgttatgcttactaatgataacacttcaaggtattgggaacctgagttttatgaggctatgtacacaccgcatacagtcttacaggctgttggggcttgtgttctttgcaattcacagacttcattaagatgtggtgcttgcatacgtagaccattcttatgttgtaaatgctgttacgaccat,agatgatatcgtaaaaacagatggtacac,gacaagactaatttatgtgatgttgatatgac -olivar-ref,olivar-ref_81,1,gaggctatgtacacaccgcata,ttgcaattgcattaaagtcagtaacatt,16204,16226,16539,16567,gaggctatgtacacaccgcatacagtcttacaggctgttggggcttgtgttctttgcaattcacagacttcattaagatgtggtgcttgcatacgtagaccattcttatgttgtaaatgctgttacgaccatgtcatatcaacatcacataaattagtcttgtctgttaatccgtatgtttgcaatgctccaggttgtgatgtcacagatgtgactcaactttacttaggaggtatgagctattattgtaaatcacataaacCacccattagttttccattgtgtgctaatggacaagtttttggtttatataaaaatacatgtgttggtagcgataatgttactgactttaatgcaattgcaa,cagtcttacaggctgttggggcttgtgttctttgcaattcacagacttcattaagatgtggtgcttgcatacgtagaccattcttatgttgtaaatgctgttacgaccatgtcatatcaacatcacataaattagtcttgtctgttaatccgtatgtttgcaatgctccaggttgtgatgtcacagatgtgactcaactttacttaggaggtatgagctattattgtaaatcacataaacCacccattagttttccattgtgtgctaatggacaagtttttggtttatataaaaatacatgtgttggtagcgat,gaggctatgtacacaccgcata,ttgcaattgcattaaagtcagtaacatt -olivar-ref,olivar-ref_82,2,tgatgtcacagatgtgactcaactt,cgataaccagtaaagacataatttcggttaa,16401,16426,16762,16793,tgatgtcacagatgtgactcaactttacttaggaggtatgagctattattgtaaatcacataaacCacccattagttttccattgtgtgctaatggacaagtttttggtttatataaaaatacatgtgttggtagcgataatgttactgactttaatgcaattgcaacatgtgactggacaaatgctggtgattacattttagctaacacctgtactgaaagactcaagctttttgcagcagaaacgctcaaagctactgaggagacatttaaactgtcttatggtattgctactgtacgtgaagtgctgtctgacagagaattaCatctttcatgggaagttggtaaacctagaccaccacttaaccgaaattatgtctttactggttatcg,tacttaggaggtatgagctattattgtaaatcacataaacCacccattagttttccattgtgtgctaatggacaagtttttggtttatataaaaatacatgtgttggtagcgataatgttactgactttaatgcaattgcaacatgtgactggacaaatgctggtgattacattttagctaacacctgtactgaaagactcaagctttttgcagcagaaacgctcaaagctactgaggagacatttaaactgtcttatggtattgctactgtacgtgaagtgctgtctgacagagaattaCatctttcatgggaagttggtaaacctagaccaccac,tgatgtcacagatgtgactcaactt,cgataaccagtaaagacataatttcggttaa -olivar-ref,olivar-ref_83,1,ttgctactgtacgtgaagtgct,agccagtaattctaacatagtgctctt,16688,16710,16963,16990,ttgctactgtacgtgaagtgctgtctgacagagaattaCatctttcatgggaagttggtaaacctagaccaccacttaaccgaaattatgtctttactggttatcgtgtaactaaaaacagtaaagtacaaataggagagtacacctttgaaaaaggtgactatggtgatgctgttgtttaccgaggtacaacaacttacaaattaaatgttggtgattattttgtgctgacatcacatacagtaatgccattaagtgcacctacactagtgccacaagagcactatgttagaattactggct,gtctgacagagaattaCatctttcatgggaagttggtaaacctagaccaccacttaaccgaaattatgtctttactggttatcgtgtaactaaaaacagtaaagtacaaataggagagtacacctttgaaaaaggtgactatggtgatgctgttgtttaccgaggtacaacaacttacaaattaaatgttggtgattattttgtgctgacatcacatacagtaatgccattaagtgcacctacactagtgccac,ttgctactgtacgtgaagtgct,agccagtaattctaacatagtgctctt -olivar-ref,olivar-ref_84,2,tgaaaaaggtgactatggtgatgct,aacagcggcatgagagca,16836,16861,17160,17178,tgaaaaaggtgactatggtgatgctgttgtttaccgaggtacaacaacttacaaattaaatgttggtgattattttgtgctgacatcacatacagtaatgccattaagtgcacctacactagtgccacaagagcactatgttagaattactggcttatacccaacactcaatatctcagatgagttttctagcaatgttgcaaaTtatcaaaaggttggtatgcaaaagtattctacactccagggaccacctggtactggtaagagtcattttgctattggcctaGctctctactacccttctgctcgcatagtgtatacagcttgctctcatgccgctgtt,gttgtttaccgaggtacaacaacttacaaattaaatgttggtgattattttgtgctgacatcacatacagtaatgccattaagtgcacctacactagtgccacaagagcactatgttagaattactggcttatacccaacactcaatatctcagatgagttttctagcaatgttgcaaaTtatcaaaaggttggtatgcaaaagtattctacactccagggaccacctggtactggtaagagtcattttgctattggcctaGctctctactacccttctgctcgcatagtgtatacagct,tgaaaaaggtgactatggtgatgct,aacagcggcatgagagca -olivar-ref,olivar-ref_85,1,ggaccacctggtactggtaag,cgtggtgcaggtaattgagc,17080,17101,17442,17462,ggaccacctggtactggtaagagtcattttgctattggcctaGctctctactacccttctgctcgcatagtgtatacagcttgctctcatgccgctgttgatgcactatgtgagaaggcattaaaatatttgcctatagataaatgtagtagaattAtacctgcacgtgctcgtgtagagtgttttgataaattcaaagtgaattcaacattagaacagtatgtcttttgtactgtaaatgcattgcctgagacgacagcagatatagttgtctttgatgaaatttcaatggccacaaattatgatttgagtgttgtcaatgccagattaCgtgctaagcactatgtgtacattggcgaccctgctcaattacctgcaccacg,agtcattttgctattggcctaGctctctactacccttctgctcgcatagtgtatacagcttgctctcatgccgctgttgatgcactatgtgagaaggcattaaaatatttgcctatagataaatgtagtagaattAtacctgcacgtgctcgtgtagagtgttttgataaattcaaagtgaattcaacattagaacagtatgtcttttgtactgtaaatgcattgcctgagacgacagcagatatagttgtctttgatgaaatttcaatggccacaaattatgatttgagtgttgtcaatgccagattaCgtgctaagcactatgtgtacattggcgaccct,ggaccacctggtactggtaag,cgtggtgcaggtaattgagc -olivar-ref,olivar-ref_86,2,ggccacaaattatgatttgagtgttg,tggcctgttaattgcagatgaaac,17370,17396,17685,17709,ggccacaaattatgatttgagtgttgtcaatgccagattaCgtgctaagcactatgtgtacattggcgaccctgctcaattacctgcaccacgcacattgctaactaagggcacactagaaccagaatatttcaattcagtgtgtagacttatgaaaactataggtccagacatgttcctcggaacttgtcggcgttgtcctgctgaaattgttgacactgtgagtgctttggtttatgataataagcttaaagcacataaagacaaatcagctcaatgctttaaaatgttttataagggtgttatcacgcatgatgtttcatctgcaattaacaggcca,tcaatgccagattaCgtgctaagcactatgtgtacattggcgaccctgctcaattacctgcaccacgcacattgctaactaagggcacactagaaccagaatatttcaattcagtgtgtagacttatgaaaactataggtccagacatgttcctcggaacttgtcggcgttgtcctgctgaaattgttgacactgtgagtgctttggtttatgataataagcttaaagcacataaagacaaatcagctcaatgctttaaaatgttttataagggtgttatcacgcatgat,ggccacaaattatgatttgagtgttg,tggcctgttaattgcagatgaaac -olivar-ref,olivar-ref_87,1,acttgtcggcgttgtcctg,tgagttggtagtcccaaaatctttg,17554,17573,17803,17828,acttgtcggcgttgtcctgctgaaattgttgacactgtgagtgctttggtttatgataataagcttaaagcacataaagacaaatcagctcaatgctttaaaatgttttataagggtgttatcacgcatgatgtttcatctgcaattaacaggccacaaataggcgtggtaagagaattccttacacgtaaccctgcttggagaaaagctgtctttatttcaccttataattcacagaatgctgtagcctcaaagattttgggactaccaactca,ctgaaattgttgacactgtgagtgctttggtttatgataataagcttaaagcacataaagacaaatcagctcaatgctttaaaatgttttataagggtgttatcacgcatgatgtttcatctgcaattaacaggccacaaataggcgtggtaagagaattccttacacgtaaccctgcttggagaaaagctgtctttatttcaccttataattcacagaatgctgtagcct,acttgtcggcgttgtcctg,tgagttggtagtcccaaaatctttg -olivar-ref,olivar-ref_88,2,gtggtaagagaattccttacacgtaac,gttgccacattcctacgtgg,17719,17746,18012,18032,gtggtaagagaattccttacacgtaaccctgcttggagaaaagctgtctttatttcaccttataattcacagaatgctgtagcctcaaagattttgggactaccaactcaaactgttgattcatcacagggctcagaatatgactatgtcatattcactcaaaccactgaaacagctcactcttgtaatgtaaacagatttaatgttgctattaccagagcaaaagtaggcatactttgcataatgtctgatagagacctttatgacaagttgcaatttacaagtcttgaaattccacgtaggaatgtggcaac,cctgcttggagaaaagctgtctttatttcaccttataattcacagaatgctgtagcctcaaagattttgggactaccaactcaaactgttgattcatcacagggctcagaatatgactatgtcatattcactcaaaccactgaaacagctcactcttgtaatgtaaacagatttaatgttgctattaccagagcaaaagtaggcatactttgcataatgtctgatagagacctttatgacaagttgcaatttacaagtcttgaaatt,gtggtaagagaattccttacacgtaac,gttgccacattcctacgtgg -olivar-ref,olivar-ref_89,1,tcagaatatgactatgtcatattcactcaaac,gaatttagtgtcaacactgaggtgt,17851,17883,18113,18138,tcagaatatgactatgtcatattcactcaaaccactgaaacagctcactcttgtaatgtaaacagatttaatgttgctattaccagagcaaaagtaggcatactttgcataatgtctgatagagacctttatgacaagttgcaatttacaagtcttgaaattccacgtaggaatgtggcaactttacaagctgaaaatgtaacaggactctttaaagattgtagtaaggtaatcaCtgggttacatcctacacaggcacctacacacctcagtgttgacactaaattc,cactgaaacagctcactcttgtaatgtaaacagatttaatgttgctattaccagagcaaaagtaggcatactttgcataatgtctgatagagacctttatgacaagttgcaatttacaagtcttgaaattccacgtaggaatgtggcaactttacaagctgaaaatgtaacaggactctttaaagattgtagtaaggtaatcaCtgggttacatcctacacaggcacctac,tcagaatatgactatgtcatattcactcaaac,gaatttagtgtcaacactgaggtgt -olivar-ref,olivar-ref_90,2,aatgtaacaggactctttaaagattgtagtaa,tcgacatcgaagccaatccat,18046,18078,18293,18314,aatgtaacaggactctttaaagattgtagtaaggtaatcaCtgggttacatcctacacaggcacctacacacctcagtgttgacactaaattcaaaactgaaggtttatgtgttgacAtacctggcatacCtaaggacatgacctatagaagactcatctctatgatgggttttaaaatgaattatcaagttaatggttaccctaacatgtttatcacccgcgaagaagctataagacatgtacgtgcatggattggcttcgatgtcga,ggtaatcaCtgggttacatcctacacaggcacctacacacctcagtgttgacactaaattcaaaactgaaggtttatgtgttgacAtacctggcatacCtaaggacatgacctatagaagactcatctctatgatgggttttaaaatgaattatcaagttaatggttaccctaacatgtttatcacccgcgaagaagctataagacatgtacgtgc,aatgtaacaggactctttaaagattgtagtaa,tcgacatcgaagccaatccat -olivar-ref,olivar-ref_91,1,cctaacatgtttatcacccgcg,gtgtttaaattgatctccaggcgg,18247,18269,18459,18483,cctaacatgtttatcacccgcgaagaagctataagacatgtacgtgcatggattggcttcgatgtcgaggggtgtcatgctactagagaagctgttggtaccaatttacctttAcagctaggtttttctacaggtgttaacctagttgctgtacctacaggttatgttgatacacctaataatacagatttttccagagttagtgctaaaccaccgcctggagatcaatttaaacac,aagaagctataagacatgtacgtgcatggattggcttcgatgtcgaggggtgtcatgctactagagaagctgttggtaccaatttacctttAcagctaggtttttctacaggtgttaacctagttgctgtacctacaggttatgttgatacacctaataatacagatttttccagagttagtgctaaacca,cctaacatgtttatcacccgcg,gtgtttaaattgatctccaggcgg -olivar-ref,olivar-ref_92,2,cctagttgctgtacctacaggttat,gcataagtgtctgaagcagtggaa,18387,18412,18689,18713,cctagttgctgtacctacaggttatgttgatacacctaataatacagatttttccagagttagtgctaaaccaccgcctggagatcaatttaaacacctcataccacttatgtacaaaggacttccttggaatgtagtgcgtataaagattgtacaaatgttaagtgacacacttaaaaatctctctgacagagtcgtAtttgtcttatgggcacatggctttgagttgacatctatgaagtattttgtgaaaataggacctgagcgcacctgttgtctatgtgatagacgtgccacatgcttttccactgcttcagacacttatgc,gttgatacacctaataatacagatttttccagagttagtgctaaaccaccgcctggagatcaatttaaacacctcataccacttatgtacaaaggacttccttggaatgtagtgcgtataaagattgtacaaatgttaagtgacacacttaaaaatctctctgacagagtcgtAtttgtcttatgggcacatggctttgagttgacatctatgaagtattttgtgaaaataggacctgagcgcacctgttgtctatgtgatagacgtgccacatgctt,cctagttgctgtacctacaggttat,gcataagtgtctgaagcagtggaa -olivar-ref,olivar-ref_93,1,acatggctttgagttgacatctatg,agtccagtcaacacgcttaaca,18600,18625,18896,18918,acatggctttgagttgacatctatgaagtattttgtgaaaataggacctgagcgcacctgttgtctatgtgatagacgtgccacatgcttttccactgcttcagacacttatgcctgttggcatcattctattggatttgattaCgtctataatccgtttatgattgatgttcaacaatggggttttacaggtaacctacaaagcaaccatgatctgtattgtcaagtccatggtaatgcacatgtagctagttgtgatgcaatcatgactaggtgtctagctgtccacgagtgctttgttaagcgtgttgactggact,aagtattttgtgaaaataggacctgagcgcacctgttgtctatgtgatagacgtgccacatgcttttccactgcttcagacacttatgcctgttggcatcattctattggatttgattaCgtctataatccgtttatgattgatgttcaacaatggggttttacaggtaacctacaaagcaaccatgatctgtattgtcaagtccatggtaatgcacatgtagctagttgtgatgcaatcatgactaggtgtctagctgtccacgagtgctt,acatggctttgagttgacatctatg,agtccagtcaacacgcttaaca -olivar-ref,olivar-ref_94,2,caagtccatggtaatgcacatgta,catcagcttgaggtacacacttaatag,18823,18847,19048,19075,caagtccatggtaatgcacatgtagctagttgtgatgcaatcatgactaggtgtctagctgtccacgagtgctttgttaagcgtgttgactggactattgaatatcctataattggtgatgaactgaagattaatgcggcttgtagaaaggttcaacacatggttgttaaagctgcattattaGcagacaaattcccagttcttcacgacattggtaaccctaaagctattaagtgtgtacctcaagctgatg,gctagttgtgatgcaatcatgactaggtgtctagctgtccacgagtgctttgttaagcgtgttgactggactattgaatatcctataattggtgatgaactgaagattaatgcggcttgtagaaaggttcaacacatggttgttaaagctgcattattaGcagacaaattcccagttcttcacgacattggtaaccctaaag,caagtccatggtaatgcacatgta,catcagcttgaggtacacacttaatag -olivar-ref,olivar-ref_95,1,gatgaactgaagattaatgcggct,cgacattgcaattccaaaataggc,18940,18964,19183,19207,gatgaactgaagattaatgcggcttgtagaaaggttcaacacatggttgttaaagctgcattattaGcagacaaattcccagttcttcacgacattggtaaccctaaagctattaagtgtgtacctcaagctgatgtagaatggaagttctatgatgcacagccttgtagtgacaaagcttataaaatagaagaattattctattcttatgccacacattctgacaaattcacagatggtgtatgcctattttggaattgcaatgtcg,tgtagaaaggttcaacacatggttgttaaagctgcattattaGcagacaaattcccagttcttcacgacattggtaaccctaaagctattaagtgtgtacctcaagctgatgtagaatggaagttctatgatgcacagccttgtagtgacaaagcttataaaatagaagaattattctattcttatgccacacattctgacaaattcacagatggtgtat,gatgaactgaagattaatgcggct,cgacattgcaattccaaaataggc -olivar-ref,olivar-ref_96,2,gttctatgatgcacagccttgtag,acgtagcagactttagtggtacat,19086,19110,19432,19456,gttctatgatgcacagccttgtagtgacaaagcttataaaatagaagaattattctattcttatgccacacattctgacaaattcacagatggtgtatgcctattttggaattgcaatgtcgaTAgAtAtcCtgCtaattccattgtttgtagatttgacactagagtgctatctaaccttaacttgcctggttgtgatggtggcagtttgtatgtaaataaacatgcattccacacaccagcttttgataaaagtgcttttgttaatttaaaacaattaccatttttctattactctgacagtccatgtgagtctcatggaaaacaagtagtgtcagatatagattatgtaccactaaagtctgctacgt,tgacaaagcttataaaatagaagaattattctattcttatgccacacattctgacaaattcacagatggtgtatgcctattttggaattgcaatgtcgaTAgAtAtcCtgCtaattccattgtttgtagatttgacactagagtgctatctaaccttaacttgcctggttgtgatggtggcagtttgtatgtaaataaacatgcattccacacaccagcttttgataaaagtgcttttgttaatttaaaacaattaccatttttctattactctgacagtccatgtgagtctcatggaaaacaagtagtgtcagatatagatt,gttctatgatgcacagccttgtag,acgtagcagactttagtggtacat -olivar-ref,olivar-ref_97,1,gatttgacactagagtgctatctaacc,gtttgtaaacccacaagctaaagc,19238,19265,19552,19576,gatttgacactagagtgctatctaaccttaacttgcctggttgtgatggtggcagtttgtatgtaaataaacatgcattccacacaccagcttttgataaaagtgcttttgttaatttaaaacaattaccatttttctattactctgacagtccatgtgagtctcatggaaaacaagtagtgtcagatatagattatgtaccactaaagtctgctacgtgtataacacgttgcaatttaggtggtgctgtctgtagacatcatgctaatgagtacagattgtatctCgatgcttataacatgatgatctcagctggctttagcttgtgggtttacaaac,ttaacttgcctggttgtgatggtggcagtttgtatgtaaataaacatgcattccacacaccagcttttgataaaagtgcttttgttaatttaaaacaattaccatttttctattactctgacagtccatgtgagtctcatggaaaacaagtagtgtcagatatagattatgtaccactaaagtctgctacgtgtataacacgttgcaatttaggtggtgctgtctgtagacatcatgctaatgagtacagattgtatctCgatgcttataacatgatgatctcagctg,gatttgacactagagtgctatctaacc,gtttgtaaacccacaagctaaagc -olivar-ref,olivar-ref_98,2,gacatcatgctaatgagtacagattgt,ggtactggtttaatgttgcgctta,19493,19520,19796,19820,gacatcatgctaatgagtacagattgtatctCgatgcttataacatgatgatctcagctggctttagcttgtgggtttacaaacaatttgatacttataacctctggaacacttttacaagacttcagagtttagaaaatgtggcttttaatgttgtaaataagggacactttgatggacaacagggtgaagtaccagtttctatcattaataacactgtttacacaaaagttgatggtgttgatgtagaattgtttgaaaataaaacaacattacctgttaatgtagcatttgagctttgggctaagcgcaacattaaaccagtacc,atctCgatgcttataacatgatgatctcagctggctttagcttgtgggtttacaaacaatttgatacttataacctctggaacacttttacaagacttcagagtttagaaaatgtggcttttaatgttgtaaataagggacactttgatggacaacagggtgaagtaccagtttctatcattaataacactgtttacacaaaagttgatggtgttgatgtagaattgtttgaaaataaaacaacattacctgttaatgtagcatttgagctttgggc,gacatcatgctaatgagtacagattgt,ggtactggtttaatgttgcgctta -olivar-ref,olivar-ref_99,1,agtttctatcattaataacactgtttacacaaaa,acctacagatggttgtaaacctttaac,19689,19723,20061,20088,agtttctatcattaataacactgtttacacaaaagttgatggtgttgatgtagaattgtttgaaaataaaacaacattacctgttaatgtagcatttgagctttgggctaagcgcaacattaaaccagtaccagaggtgaaaatactcaataatttgggtgtggacattgctgctaatactgtgatctgggactacaaaagagatgctccagcacatatatctactattggtgtttgttctatgactgacatagccaagaaaccaaCtgaaacgatttgtgcaccactcactgtcttttttgatggtagagttgatggtcaagtagacttatttagaaatgcccgtaatggtgttcttattacagaAggtagtgttaaaggtttacaaccatctgtaggt,gttgatggtgttgatgtagaattgtttgaaaataaaacaacattacctgttaatgtagcatttgagctttgggctaagcgcaacattaaaccagtaccagaggtgaaaatactcaataatttgggtgtggacattgctgctaatactgtgatctgggactacaaaagagatgctccagcacatatatctactattggtgtttgttctatgactgacatagccaagaaaccaaCtgaaacgatttgtgcaccactcactgtcttttttgatggtagagttgatggtcaagtagacttatttagaaatgcccgtaatggtgttcttattacagaAggtagt,agtttctatcattaataacactgtttacacaaaa,acctacagatggttgtaaacctttaac -olivar-ref,olivar-ref_100,2,atactgtgatctgggactacaaaaga,tgttggacaacaccatcaactttc,19865,19891,20159,20183,atactgtgatctgggactacaaaagagatgctccagcacatatatctactattggtgtttgttctatgactgacatagccaagaaaccaaCtgaaacgatttgtgcaccactcactgtcttttttgatggtagagttgatggtcaagtagacttatttagaaatgcccgtaatggtgttcttattacagaAggtagtgttaaaggtttacaaccatctgtaggtcccaaacaagctagtcttaatggagtcacattaattggagaagccgtaaaaacacagttcaattattataagaaagttgatggtgttgtccaaca,gatgctccagcacatatatctactattggtgtttgttctatgactgacatagccaagaaaccaaCtgaaacgatttgtgcaccactcactgtcttttttgatggtagagttgatggtcaagtagacttatttagaaatgcccgtaatggtgttcttattacagaAggtagtgttaaaggtttacaaccatctgtaggtcccaaacaagctagtcttaatggagtcacattaattggagaagccgtaaaaacacagttcaattattataa,atactgtgatctgggactacaaaaga,tgttggacaacaccatcaactttc -olivar-ref,olivar-ref_101,1,acattaattggagaagccgtaaaaaca,tccaatcagtagatgtaaaccacct,20116,20143,20354,20379,acattaattggagaagccgtaaaaacacagttcaattattataagaaagttgatggtgttgtccaacaattacctgaaacttactttactcagagtagaaatttacaagaatttaaacccaggagtcaaatggaaattgatttcttAgaattagctatggatgaattcattgaacggtataaattagaaggctatgccttcgaacatatcgtttatggagattttagtcatagtcagttaggtggtttacatctactgattgga,cagttcaattattataagaaagttgatggtgttgtccaacaattacctgaaacttactttactcagagtagaaatttacaagaatttaaacccaggagtcaaatggaaattgatttcttAgaattagctatggatgaattcattgaacggtataaattagaaggctatgccttcgaacatatcgtttatggagattttagtcatagtcagtt,acattaattggagaagccgtaaaaaca,tccaatcagtagatgtaaaccacct -olivar-ref,olivar-ref_102,2,tcattgaacggtataaattagaaggctatg,ggttgccacgcttgactagatt,20282,20312,20656,20678,tcattgaacggtataaattagaaggctatgccttcgaacatatcgtttatggagattttagtcatagtcagttaggtggtttacatctactgattggactagctaaacgttttaaggaatcaccttttgaattagaAgattttattcctatggacagtacagttaaaaactatttcataacagatgcgcaaacaggttcatctaagtgtgtgtgttctgttattgatttattacttgatgattttgttgaaataataaaatcccaagatttatctgtagtttctaaggttgtcaaagtgactattgactatacagaaatttcatttatgctttggtgtaaagatggccatgtagaaacattttacccaaaattacaatctagtcaagcgtggcaacc,ccttcgaacatatcgtttatggagattttagtcatagtcagttaggtggtttacatctactgattggactagctaaacgttttaaggaatcaccttttgaattagaAgattttattcctatggacagtacagttaaaaactatttcataacagatgcgcaaacaggttcatctaagtgtgtgtgttctgttattgatttattacttgatgattttgttgaaataataaaatcccaagatttatctgtagtttctaaggttgtcaaagtgactattgactatacagaaatttcatttatgctttggtgtaaagatggccatgtagaaacattttacccaaaattac,tcattgaacggtataaattagaaggctatg,ggttgccacgcttgactagatt -olivar-ref,olivar-ref_103,1,atggacagtacagttaaaaactatttcataac,atcattatgcctttaggtaatgttgca,20431,20463,20756,20783,atggacagtacagttaaaaactatttcataacagatgcgcaaacaggttcatctaagtgtgtgtgttctgttattgatttattacttgatgattttgttgaaataataaaatcccaagatttatctgtagtttctaaggttgtcaaagtgactattgactatacagaaatttcatttatgctttggtgtaaagatggccatgtagaaacattttacccaaaattacaatctagtcaagcgtggcaaccgggtgttgctatgcctaatctttacaaaatgcaaagaatgctattagaaaagtgtgaccttcaaaattatggtgatagtgcaacattacctaaaggcataatgat,agatgcgcaaacaggttcatctaagtgtgtgtgttctgttattgatttattacttgatgattttgttgaaataataaaatcccaagatttatctgtagtttctaaggttgtcaaagtgactattgactatacagaaatttcatttatgctttggtgtaaagatggccatgtagaaacattttacccaaaattacaatctagtcaagcgtggcaaccgggtgttgctatgcctaatctttacaaaatgcaaagaatgctattagaaaagtgtgaccttcaaaattatggtgatag,atggacagtacagttaaaaactatttcataac,atcattatgcctttaggtaatgttgca -olivar-ref,olivar-ref_104,2,gctattagaaaagtgtgaccttcaaaatt,gtaacatttttagtcttagggtcgtacatat,20718,20747,21046,21077,gctattagaaaagtgtgaccttcaaaattatggtgatagtgcaacattacctaaaggcataatgatgaatgtcgcaaaatatactcaactgtgtcaatatttaaacacattaacattagctgtaccctataatatgagagttatacattttggtgctggttctgataaaggagttgcaccaggtacagctgttttaagacagtggttgcctacgggtacGctgcttgtcgattcagatcttaatgactttgtctctgatgcagattcaactttgattggtgattgtgcaactgtacatacagctaataaatgggatctcattattagtgatatgtacgaccctaagactaaaaatgttac,atggtgatagtgcaacattacctaaaggcataatgatgaatgtcgcaaaatatactcaactgtgtcaatatttaaacacattaacattagctgtaccctataatatgagagttatacattttggtgctggttctgataaaggagttgcaccaggtacagctgttttaagacagtggttgcctacgggtacGctgcttgtcgattcagatcttaatgactttgtctctgatgcagattcaactttgattggtgattgtgcaactgtacatacagctaataaatgggatctcattattagtg,gctattagaaaagtgtgaccttcaaaatt,gtaacatttttagtcttagggtcgtacatat -olivar-ref,olivar-ref_105,1,gagttgcaccaggtacagct,gcgaagtgtcccatgagctt,20888,20908,21201,21221,gagttgcaccaggtacagctgttttaagacagtggttgcctacgggtacGctgcttgtcgattcagatcttaatgactttgtctctgatgcagattcaactttgattggtgattgtgcaactgtacatacagctaataaatgggatctcattattagtgatatgtacgaccctaagactaaaaatgttacaaaagaaaatgactctaaagagggttttttcacttacatttgtgggtttatacaacaaaAgctagctcttggaggttccgtggctataaagataacagaacattcttggaatgctgatctttataagctcatgggacacttcgc,gttttaagacagtggttgcctacgggtacGctgcttgtcgattcagatcttaatgactttgtctctgatgcagattcaactttgattggtgattgtgcaactgtacatacagctaataaatgggatctcattattagtgatatgtacgaccctaagactaaaaatgttacaaaagaaaatgactctaaagagggttttttcacttacatttgtgggtttatacaacaaaAgctagctcttggaggttccgtggctataaagataacagaacattcttggaatgctgatctttat,gagttgcaccaggtacagct,gcgaagtgtcccatgagctt -olivar-ref,olivar-ref_106,2,aaagagggttttttcacttacatttgtg,agacataacagcagtaccccttaat,21094,21122,21416,21441,aaagagggttttttcacttacatttgtgggtttatacaacaaaAgctagctcttggaggttccgtggctataaagataacagaacattcttggaatgctgatctttataagctcatgggacacttcgcatggtggacagcctttgttactaatgtgaatgcgtcatcatctgaagcatttttaattggatgtaattatcttggcaaaccacgcgaacaaatagatggttatgtcatgcatgcaaattacatattttggaggaatacaaatccaattcaGttgtcttcctattctttatttgacatgagtaaatttccccttaaattaaggggtactgctgttatgtct,ggtttatacaacaaaAgctagctcttggaggttccgtggctataaagataacagaacattcttggaatgctgatctttataagctcatgggacacttcgcatggtggacagcctttgttactaatgtgaatgcgtcatcatctgaagcatttttaattggatgtaattatcttggcaaaccacgcgaacaaatagatggttatgtcatgcatgcaaattacatattttggaggaatacaaatccaattcaGttgtcttcctattctttatttgacatgagtaaatttccccttaa,aaagagggttttttcacttacatttgtg,agacataacagcagtaccccttaat -olivar-ref,olivar-ref_107,1,ggcaaaccacgcgaacaaata,ggatctgaaaactttgtcagggtaataa,21295,21316,21669,21697,ggcaaaccacgcgaacaaatagatggttatgtcatgcatgcaaattacatattttggaggaatacaaatccaattcaGttgtcttcctattctttatttgacatgagtaaatttccccttaaattaaggggtactgctgttatgtctttaaaagaaggtcaaatcaatgatatgattttatctcttcttagtaaaggtagacttataattagagaaaacaacagagttgttatttctagtgatgttcttgttaacaactaaacgaacaatgtttgtttttCttgttttattgccactagtCtctagtcagtgtgttaatcttaCaaccagaactcaaTTACCCCCTGcatacactaattctttcacacgtggtgtttattaccctgacaaagttttcagatcc,gatggttatgtcatgcatgcaaattacatattttggaggaatacaaatccaattcaGttgtcttcctattctttatttgacatgagtaaatttccccttaaattaaggggtactgctgttatgtctttaaaagaaggtcaaatcaatgatatgattttatctcttcttagtaaaggtagacttataattagagaaaacaacagagttgttatttctagtgatgttcttgttaacaactaaacgaacaatgtttgtttttCttgttttattgccactagtCtctagtcagtgtgttaatcttaCaaccagaactcaaTTACCCCCTGcatacactaattctttcacacgtggtgt,ggcaaaccacgcgaacaaata,ggatctgaaaactttgtcagggtaataa -olivar-ref,olivar-ref_108,2,agagttgttatttctagtgatgttcttgtta,ccatcattaaatggtaggacagggt,21517,21548,21803,21828,agagttgttatttctagtgatgttcttgttaacaactaaacgaacaatgtttgtttttCttgttttattgccactagtCtctagtcagtgtgttaatcttaCaaccagaactcaaTTACCCCCTGcatacactaattctttcacacgtggtgtttattaccctgacaaagttttcagatcctcagttttacattcaactcaggacttgttcttacctttcttttccaatgttacttggttccatgCtatACATGTCtctgggaccaatggtactaagaggtttgataaccctgtcctaccatttaatgatgg,acaactaaacgaacaatgtttgtttttCttgttttattgccactagtCtctagtcagtgtgttaatcttaCaaccagaactcaaTTACCCCCTGcatacactaattctttcacacgtggtgtttattaccctgacaaagttttcagatcctcagttttacattcaactcaggacttgttcttacctttcttttccaatgttacttggttccatgCtatACATGTCtctgggaccaatggtactaagaggtttgata,agagttgttatttctagtgatgttcttgtta,ccatcattaaatggtaggacagggt -olivar-ref,olivar-ref_109,1,aggacttgttcttacctttcttttcc,agagacatattcaaaagtgcaattattcg,21717,21743,22049,22078,aggacttgttcttacctttcttttccaatgttacttggttccatgCtatACATGTCtctgggaccaatggtactaagaggtttgataaccctgtcctaccatttaatgatggtgtttattttgcttccaCtgagaagtctaacataataagaggctggatttttggtactactttagattCgaagacccagtccctacttattgttaataacgctactaatgttgttattaaagtctgtgaatttcaattttgtaatgatccatttttgGGTGTTTATTaccacaaaaacaacaaaagttggatggaaagtGAGTTCAgagtttattctagtgcgaataattgcacttttgaatatgtctct,aatgttacttggttccatgCtatACATGTCtctgggaccaatggtactaagaggtttgataaccctgtcctaccatttaatgatggtgtttattttgcttccaCtgagaagtctaacataataagaggctggatttttggtactactttagattCgaagacccagtccctacttattgttaataacgctactaatgttgttattaaagtctgtgaatttcaattttgtaatgatccatttttgGGTGTTTATTaccacaaaaacaacaaaagttggatggaaagtGAGTTCAgagtttattctagtg,aggacttgttcttacctttcttttcc,agagacatattcaaaagtgcaattattcg -olivar-ref,olivar-ref_110,2,gaagacccagtccctacttattgt,agcaagtaaagtttgaaacctagtgat,21898,21922,22264,22291,gaagacccagtccctacttattgttaataacgctactaatgttgttattaaagtctgtgaatttcaattttgtaatgatccatttttgGGTGTTTATTaccacaaaaacaacaaaagttggatggaaagtGAGTTCAgagtttattctagtgcgaataattgcacttttgaatatgtctctcagccttttcttatggaccttgaaggaaaacagggtaatttcaaaaatcttagggaatttgtgtttaagaatattgatggttattttaaaatatattctaagcacacgcctattAATTtagTgcgtgatctccctcagggtttttcggCtttagaaccattggtagatttgccaataggtattaacatcactaggtttcaaactttacttgct,taataacgctactaatgttgttattaaagtctgtgaatttcaattttgtaatgatccatttttgGGTGTTTATTaccacaaaaacaacaaaagttggatggaaagtGAGTTCAgagtttattctagtgcgaataattgcacttttgaatatgtctctcagccttttcttatggaccttgaaggaaaacagggtaatttcaaaaatcttagggaatttgtgtttaagaatattgatggttattttaaaatatattctaagcacacgcctattAATTtagTgcgtgatctccctcagggtttttcggCtttagaaccattggtagatttgccaataggtattaac,gaagacccagtccctacttattgt,agcaagtaaagtttgaaacctagtgat -olivar-ref,olivar-ref_111,1,tgaaggaaaacagggtaatttcaaaaatc,actttgtttctgagagagggtcaa,22099,22128,22439,22463,tgaaggaaaacagggtaatttcaaaaatcttagggaatttgtgtttaagaatattgatggttattttaaaatatattctaagcacacgcctattAATTtagTgcgtgatctccctcagggtttttcggCtttagaaccattggtagatttgccaataggtattaacatcactaggtttcaaactttacttgctttacatagaagttatttgactcctggtgattcttcttcaggttggacagctggtgctgcagcttattatgtgggttatcttcaacctaggacttttctattaaaatataatgaaaatggaaccattacagatgctgtagactgtgcacttgaccctctctcagaaacaaagt,ttagggaatttgtgtttaagaatattgatggttattttaaaatatattctaagcacacgcctattAATTtagTgcgtgatctccctcagggtttttcggCtttagaaccattggtagatttgccaataggtattaacatcactaggtttcaaactttacttgctttacatagaagttatttgactcctggtgattcttcttcaggttggacagctggtgctgcagcttattatgtgggttatcttcaacctaggacttttctattaaaatataatgaaaatggaaccattacagatgctgtagactgtgcac,tgaaggaaaacagggtaatttcaaaaatc,actttgtttctgagagagggtcaa -olivar-ref,olivar-ref_112,2,gctgcagcttattatgtgggttat,agtaggagacactccataacacttaaaa,22346,22370,22689,22717,gctgcagcttattatgtgggttatcttcaacctaggacttttctattaaaatataatgaaaatggaaccattacagatgctgtagactgtgcacttgaccctctctcagaaacaaagtgtacgttgaaatccttcactgtagaaaaaggaatctatcaaacttctaactttagagtccaaccaacagaatctattgttagatttcctaatattacaaacttgtgcccttttgGtgaagtttttaacgccaccaGatttgcatctgtttatgcttggaacaggaagagaatcagcaactgtgttgctgattattctgtcctatataatTCcgcaTcattttCcActtttaagtgttatggagtgtctcctact,cttcaacctaggacttttctattaaaatataatgaaaatggaaccattacagatgctgtagactgtgcacttgaccctctctcagaaacaaagtgtacgttgaaatccttcactgtagaaaaaggaatctatcaaacttctaactttagagtccaaccaacagaatctattgttagatttcctaatattacaaacttgtgcccttttgGtgaagtttttaacgccaccaGatttgcatctgtttatgcttggaacaggaagagaatcagcaactgtgttgctgattattctgtcctatataatTCcgcaTcattttCcAc,gctgcagcttattatgtgggttat,agtaggagacactccataacacttaaaa -olivar-ref,olivar-ref_113,1,tgtagaaaaaggaatctatcaaacttctaact,gcagcctgtaaaatcatctggtaattta,22483,22515,22830,22858,tgtagaaaaaggaatctatcaaacttctaactttagagtccaaccaacagaatctattgttagatttcctaatattacaaacttgtgcccttttgGtgaagtttttaacgccaccaGatttgcatctgtttatgcttggaacaggaagagaatcagcaactgtgttgctgattattctgtcctatataatTCcgcaTcattttCcActtttaagtgttatggagtgtctcctactaaattaaatgatctctgctttactaatgtctatgcagattcatttgtaattagaggtGatgaagtcagAcaaatCgctccaggGcaaactggaaaGattgctgattataattataaattaccagatgattttacaggctgc,ttagagtccaaccaacagaatctattgttagatttcctaatattacaaacttgtgcccttttgGtgaagtttttaacgccaccaGatttgcatctgtttatgcttggaacaggaagagaatcagcaactgtgttgctgattattctgtcctatataatTCcgcaTcattttCcActtttaagtgttatggagtgtctcctactaaattaaatgatctctgctttactaatgtctatgcagattcatttgtaattagaggtGatgaagtcagAcaaatCgctccaggGcaaactggaaaGattgctgattataatta,tgtagaaaaaggaatctatcaaacttctaact,gcagcctgtaaaatcatctggtaattta -olivar-ref,olivar-ref_114,2,gctttactaatgtctatgcagattcatttg,tggtgcatgtagaagttcaaaagaaa,22734,22764,23099,23125,gctttactaatgtctatgcagattcatttgtaattagaggtGatgaagtcagAcaaatCgctccaggGcaaactggaaaGattgctgattataattataaattaccagatgattttacaggctgcgttatagcttggaattctaacaaTcttgattctaaggttGgtggtaattataattaccTgtatagattgtttaggaagtctaatctcaaaccttttgagagagatatttcaactgaaatctatcaggccggtaGcaCaccttgtaatggtgttgAaggttttaattgttactttcctttacAatcatatGgtttccAacccactAatggtgttggtTaccaaccatacagagtagtagtactttcttttgaacttctacatgcacca,taattagaggtGatgaagtcagAcaaatCgctccaggGcaaactggaaaGattgctgattataattataaattaccagatgattttacaggctgcgttatagcttggaattctaacaaTcttgattctaaggttGgtggtaattataattaccTgtatagattgtttaggaagtctaatctcaaaccttttgagagagatatttcaactgaaatctatcaggccggtaGcaCaccttgtaatggtgttgAaggttttaattgttactttcctttacAatcatatGgtttccAacccactAatggtgttggtTaccaaccatacagagtagtagtac,gctttactaatgtctatgcagattcatttg,tggtgcatgtagaagttcaaaagaaa -olivar-ref,olivar-ref_115,1,ccttttgagagagatatttcaactgaaatc,catggtgtaatgtcaagaatctcaagt,22949,22979,23304,23331,ccttttgagagagatatttcaactgaaatctatcaggccggtaGcaCaccttgtaatggtgttgAaggttttaattgttactttcctttacAatcatatGgtttccAacccactAatggtgttggtTaccaaccatacagagtagtagtactttcttttgaacttctacatgcaccagcaactgtttgtggacctaaaaagtctactaatttggttaaaaacaaatgtgtcaatttcaacttcaatggtttaaCaggcacaggtgttcttactgagtctaacaaaaagtttctgcctttccaacaatttggcagagacattgctgacactactgaTgctgtccgtgatccacagacacttgagattcttgacattacaccatg,tatcaggccggtaGcaCaccttgtaatggtgttgAaggttttaattgttactttcctttacAatcatatGgtttccAacccactAatggtgttggtTaccaaccatacagagtagtagtactttcttttgaacttctacatgcaccagcaactgtttgtggacctaaaaagtctactaatttggttaaaaacaaatgtgtcaatttcaacttcaatggtttaaCaggcacaggtgttcttactgagtctaacaaaaagtttctgcctttccaacaatttggcagagacattgctgacactactgaTgctgtccgtgatccacagac,ccttttgagagagatatttcaactgaaatc,catggtgtaatgtcaagaatctcaagt -olivar-ref,olivar-ref_116,2,gagtctaacaaaaagtttctgcctttc,actagcgcatatacctgcacc,23222,23249,23560,23581,gagtctaacaaaaagtttctgcctttccaacaatttggcagagacattgctgacactactgaTgctgtccgtgatccacagacacttgagattcttgacattacaccatgttcttttggtggtgtcagtgttataacaccaggaacaaatacttctaaccaggttgctgttctttatcaGgAtgttaactgcacagaagtccctgttgctattcatgcagatcaacttactcctacttggcgtgtttattctacaggttctaatgtttttcaaacacgtgcaggctgtttaataggggctgaaCatgtcaacaactcatatgagtgtgacatacccattggtgcaggtatatgcgctagt,caacaatttggcagagacattgctgacactactgaTgctgtccgtgatccacagacacttgagattcttgacattacaccatgttcttttggtggtgtcagtgttataacaccaggaacaaatacttctaaccaggttgctgttctttatcaGgAtgttaactgcacagaagtccctgttgctattcatgcagatcaacttactcctacttggcgtgtttattctacaggttctaatgtttttcaaacacgtgcaggctgtttaataggggctgaaCatgtcaacaactcatatgagtgtgacatacccatt,gagtctaacaaaaagtttctgcctttc,actagcgcatatacctgcacc -olivar-ref,olivar-ref_117,1,gaagtccctgttgctattcatgc,tctactgatgtcttggtcatagacac,23417,23440,23746,23772,gaagtccctgttgctattcatgcagatcaacttactcctacttggcgtgtttattctacaggttctaatgtttttcaaacacgtgcaggctgtttaataggggctgaaCatgtcaacaactcatatgagtgtgacatacccattggtgcaggtatatgcgctagttatcagactcagactaaTtctcCtcggcgggcacgtagtgtagctagtcaatccatcattgcctacactatgtcacttggtgCagaaaattcagttgcttactctaataactctattgccatacccacaaattttactattagtgttaccacagaaattctaccagtgtctatgaccaagacatcagtaga,agatcaacttactcctacttggcgtgtttattctacaggttctaatgtttttcaaacacgtgcaggctgtttaataggggctgaaCatgtcaacaactcatatgagtgtgacatacccattggtgcaggtatatgcgctagttatcagactcagactaaTtctcCtcggcgggcacgtagtgtagctagtcaatccatcattgcctacactatgtcacttggtgCagaaaattcagttgcttactctaataactctattgccatacccacaaattttactattagtgttaccacagaaattctacca,gaagtccctgttgctattcatgc,tctactgatgtcttggtcatagacac -olivar-ref,olivar-ref_118,2,gccatacccacaaattttactattagtgtt,aaatgacctcttgcttggttttgat,23699,23729,23988,24013,gccatacccacaaattttactattagtgttaccacagaaattctaccagtgtctatgaccaagacatcagtagattgtacaatgtacatttgtggtgattcaactgaatgcagcaatcttttgttgcaatatggcagtttttgtacacaattaaaCcgtgctttaactggaatagctgttgaacaagacaaaaacacccaagaagtttttgcacaagtcaaacaaatttacaaaacaccaccaattaaaGattttggtggttttaatttttcacaaatattaccagatccatcaaaaccaagcaagaggtcattt,accacagaaattctaccagtgtctatgaccaagacatcagtagattgtacaatgtacatttgtggtgattcaactgaatgcagcaatcttttgttgcaatatggcagtttttgtacacaattaaaCcgtgctttaactggaatagctgttgaacaagacaaaaacacccaagaagtttttgcacaagtcaaacaaatttacaaaacaccaccaattaaaGattttggtggttttaatttttcacaaatattaccagatcc,gccatacccacaaattttactattagtgtt,aaatgacctcttgcttggttttgat -olivar-ref,olivar-ref_119,1,aatgcagcaatcttttgttgcaatat,gcagcaatatcaccaaggcaatc,23805,23831,24076,24099,aatgcagcaatcttttgttgcaatatggcagtttttgtacacaattaaaCcgtgctttaactggaatagctgttgaacaagacaaaaacacccaagaagtttttgcacaagtcaaacaaatttacaaaacaccaccaattaaaGattttggtggttttaatttttcacaaatattaccagatccatcaaaaccaagcaagaggtcatttattgaagatctacttttcaacaaagtgacacttgcagatgctggcttcatcaaacaatatggtgattgccttggtgatattgctgc,ggcagtttttgtacacaattaaaCcgtgctttaactggaatagctgttgaacaagacaaaaacacccaagaagtttttgcacaagtcaaacaaatttacaaaacaccaccaattaaaGattttggtggttttaatttttcacaaatattaccagatccatcaaaaccaagcaagaggtcatttattgaagatctacttttcaacaaagtgacacttgcagatgctggcttcatcaaacaatatggt,aatgcagcaatcttttgttgcaatat,gcagcaatatcaccaaggcaatc -olivar-ref,olivar-ref_120,2,acaaagtgacacttgcagatgc,ccaataccattaaacctataagccatttg,24033,24055,24262,24291,acaaagtgacacttgcagatgctggcttcatcaaacaatatggtgattgccttggtgatattgctgctagagacctcatttgtgcacaaaagtttaaCggccttactgttttgccacctttgctcacagatgaaatgattgctcaatacacttctgcactgttagcgggtacaatCacttctggttggacctttggtgcaggtgctgcattacaaataccatttgctatgcaaatggcttataggtttaatggtattgg,tggcttcatcaaacaatatggtgattgccttggtgatattgctgctagagacctcatttgtgcacaaaagtttaaCggccttactgttttgccacctttgctcacagatgaaatgattgctcaatacacttctgcactgttagcgggtacaatCacttctggttggacctttggtgcaggtgctgcattacaaataccatttgctatg,acaaagtgacacttgcagatgc,ccaataccattaaacctataagccatttg -olivar-ref,olivar-ref_121,1,cacctttgctcacagatgaaatga,ctgtggaagaaagtgagtcttgaatt,24147,24171,24360,24386,cacctttgctcacagatgaaatgattgctcaatacacttctgcactgttagcgggtacaatCacttctggttggacctttggtgcaggtgctgcattacaaataccatttgctatgcaaatggcttataggtttaatggtattggagttacacagaatgttctctatgagaaccaaaaattgattgccaaccaatttaatagtgctattggcaaaattcaagactcactttcttccacag,ttgctcaatacacttctgcactgttagcgggtacaatCacttctggttggacctttggtgcaggtgctgcattacaaataccatttgctatgcaaatggcttataggtttaatggtattggagttacacagaatgttctctatgagaaccaaaaattgattgccaaccaatttaatagtgctattggcaa,cacctttgctcacagatgaaatga,ctgtggaagaaagtgagtcttgaatt -olivar-ref,olivar-ref_122,2,accaaaaattgattgccaaccaatttaata,gtagcagcaagattagcagaagc,24318,24348,24619,24642,accaaaaattgattgccaaccaatttaatagtgctattggcaaaattcaagactcactttcttccacagcaagtgcacttggaaaacttcaaGatgtggtcaaccaAaatgcacaagctttaaacacgcttgttaaacaacttagctccaaTtttggtgcaatttcaagtgttttaaatgatatcCtttcacgtcttgacaaagttgaggctgaagtgcaaattgataggttgatcacaggcagacttcaaagtttgcagacatatgtgactcaacaattaattagagctgcagaaatcagagcttctgctaatcttgctgctac,gtgctattggcaaaattcaagactcactttcttccacagcaagtgcacttggaaaacttcaaGatgtggtcaaccaAaatgcacaagctttaaacacgcttgttaaacaacttagctccaaTtttggtgcaatttcaagtgttttaaatgatatcCtttcacgtcttgacaaagttgaggctgaagtgcaaattgataggttgatcacaggcagacttcaaagtttgcagacatatgtgactcaacaattaattagagctgcagaaatcaga,accaaaaattgattgccaaccaatttaata,gtagcagcaagattagcagaagc -olivar-ref,olivar-ref_123,1,ttgcagacatatgtgactcaacaatta,cacgaggaaagtgtgcttttcc,24572,24599,24814,24836,ttgcagacatatgtgactcaacaattaattagagctgcagaaatcagagcttctgctaatcttgctgctactaaaatgtcagagtgtgtacttggacaatcaaaaagagttgatttttgtggaaagggctatcatcttatgtccttccctcagtcagcacctcatggtgtagtcttcttgcatgtgacttatgtccctgcacaagaaaagaacttcacaactgctcctgccAtttgtcatgatggaaaagcacactttcctcgtg,attagagctgcagaaatcagagcttctgctaatcttgctgctactaaaatgtcagagtgtgtacttggacaatcaaaaagagttgatttttgtggaaagggctatcatcttatgtccttccctcagtcagcacctcatggtgtagtcttcttgcatgtgacttatgtccctgcacaagaaaagaacttcacaactgctcctgccAtttgtcatgat,ttgcagacatatgtgactcaacaatta,cacgaggaaagtgtgcttttcc -olivar-ref,olivar-ref_124,2,gtcagcacctcatggtgtagt,tcataaactgtgttgttgacaattcctat,24724,24745,24949,24978,gtcagcacctcatggtgtagtcttcttgcatgtgacttatgtccctgcacaagaaaagaacttcacaactgctcctgccAtttgtcatgatggaaaagcacactttcctcgtgaaggtgtctttgtttcaaatggcacacactggtttGtaacacaaaggaatttttatgaaccacaaatcattactacagacaacacatttgtGtctggtaactgtgatgttgtaataggaattgtcaacaacacagtttatga,cttcttgcatgtgacttatgtccctgcacaagaaaagaacttcacaactgctcctgccAtttgtcatgatggaaaagcacactttcctcgtgaaggtgtctttgtttcaaatggcacacactggtttGtaacacaaaggaatttttatgaaccacaaatcattactacagacaacacatttgtGtctggtaactgtgatgttgta,gtcagcacctcatggtgtagt,tcataaactgtgttgttgacaattcctat -olivar-ref,olivar-ref_125,1,ccacaaatcattactacagacaacacat,tgtcaccattactatggcaatcaag,24896,24924,25230,25255,ccacaaatcattactacagacaacacatttgtGtctggtaactgtgatgttgtaataggaattgtcaacaacacagtttatgatcctttgcaacctgaattagaCtcattcaaggaggagttagataaatattttaagaatcatacatcaccagatgttgatttaggtgacatctctggcattaatgcttcagttgtaaacattcaaaaagaaattgaccgcctcaatgaggttgccaagaatttaaatgaatctctcatcgatctccaagaacttggaaagtatgagcagtatataaaatggccaTggtacatttggctaggttttatagctggcttgattgccatagtaatggtgaca,ttgtGtctggtaactgtgatgttgtaataggaattgtcaacaacacagtttatgatcctttgcaacctgaattagaCtcattcaaggaggagttagataaatattttaagaatcatacatcaccagatgttgatttaggtgacatctctggcattaatgcttcagttgtaaacattcaaaaagaaattgaccgcctcaatgaggttgccaagaatttaaatgaatctctcatcgatctccaagaacttggaaagtatgagcagtatataaaatggccaTggtacatttggctaggttttatagctgg,ccacaaatcattactacagacaacacat,tgtcaccattactatggcaatcaag -olivar-ref,olivar-ref_126,2,gatctccaagaacttggaaagtatgag,aataagccatccgaaagggagt,25157,25184,25511,25533,gatctccaagaacttggaaagtatgagcagtatataaaatggccaTggtacatttggctaggttttatagctggcttgattgccatagtaatggtgacaattatgctttgctgtatgaccagttgctgtagttgtctcaagggctgttgttcttgtggatcctgctgcaaatttgatgaagaCgactctgagccaGtgctcaaaggagtcaaattacattacacataaacgaacttatggatttgtttatgagaatcttcacaattggaactgtaactttgaagcaaggtgaaatcaaggatgctactccttCagattttgttcgcgctactgcaacgataccgatacaagcctcactccctttcggatggcttatt,cagtatataaaatggccaTggtacatttggctaggttttatagctggcttgattgccatagtaatggtgacaattatgctttgctgtatgaccagttgctgtagttgtctcaagggctgttgttcttgtggatcctgctgcaaatttgatgaagaCgactctgagccaGtgctcaaaggagtcaaattacattacacataaacgaacttatggatttgtttatgagaatcttcacaattggaactgtaactttgaagcaaggtgaaatcaaggatgctactccttCagattttgttcgcgctactgcaacgataccgatacaagcctc,gatctccaagaacttggaaagtatgag,aataagccatccgaaagggagt -olivar-ref,olivar-ref_127,1,tgtctcaagggctgttgttctt,gcaaaaggtgtgagtaaactgttacaaa,25289,25311,25650,25678,tgtctcaagggctgttgttcttgtggatcctgctgcaaatttgatgaagaCgactctgagccaGtgctcaaaggagtcaaattacattacacataaacgaacttatggatttgtttatgagaatcttcacaattggaactgtaactttgaagcaaggtgaaatcaaggatgctactccttCagattttgttcgcgctactgcaacgataccgatacaagcctcactccctttcggatggcttattgttggcgttgcacttcttgctgtttttcagagcgcttccaaaatcataacCctcaaaaagagatggcaactagcactctcCaagggtgttCactttgtttgcaacttgctgttgttgtttgtaacagtttactcacaccttttgc,gtggatcctgctgcaaatttgatgaagaCgactctgagccaGtgctcaaaggagtcaaattacattacacataaacgaacttatggatttgtttatgagaatcttcacaattggaactgtaactttgaagcaaggtgaaatcaaggatgctactccttCagattttgttcgcgctactgcaacgataccgatacaagcctcactccctttcggatggcttattgttggcgttgcacttcttgctgtttttcagagcgcttccaaaatcataacCctcaaaaagagatggcaactagcactctcCaagggtgttCactttgtttgcaacttgctgttgttg,tgtctcaagggctgttgttctt,gcaaaaggtgtgagtaaactgttacaaa -olivar-ref,olivar-ref_128,2,actagcactctcCaagggtgt,tggtagtcatgttcagaaataggactt,25602,25623,25919,25946,actagcactctcCaagggtgttCactttgtttgcaacttgctgttgttgtttgtaacagtttactcacaccttttgctcgttgctgctggccttgaagccCcttttCtctatctttatgctttagtctacttcttgcagagtataaactttgtaagaataataatgaggctttggctttgctggaaatgccgttccaaaaacccattactttatgatgccaactattttctttgctggcatactaattgttacGactattgtataccttacaatagtgtaacttCttcaattgtcattacttcaggtgatggcacaacaagtcctatttctgaacatgactacca,tCactttgtttgcaacttgctgttgttgtttgtaacagtttactcacaccttttgctcgttgctgctggccttgaagccCcttttCtctatctttatgctttagtctacttcttgcagagtataaactttgtaagaataataatgaggctttggctttgctggaaatgccgttccaaaaacccattactttatgatgccaactattttctttgctggcatactaattgttacGactattgtataccttacaatagtgtaacttCttcaattgtcattacttcaggtgatggcacaac,actagcactctcCaagggtgt,tggtagtcatgttcagaaataggactt -olivar-ref,olivar-ref_129,1,gctggaaatgccgttccaaa,gagttgagtacagctggtaatagtct,25781,25801,26018,26044,gctggaaatgccgttccaaaaacccattactttatgatgccaactattttctttgctggcatactaattgttacGactattgtataccttacaatagtgtaacttCttcaattgtcattacttcaggtgatggcacaacaagtcctatttctgaacatgactaccagattggtggttatactgaaaaatgggaatctggagtaaaagactgtgttgtattacacagttacttcacttcagactattaccagctgtactcaactc,aacccattactttatgatgccaactattttctttgctggcatactaattgttacGactattgtataccttacaatagtgtaacttCttcaattgtcattacttcaggtgatggcacaacaagtcctatttctgaacatgactaccagattggtggttatactgaaaaatgggaatctggagtaaaagactgtgttgtattacacagttacttcacttc,gctggaaatgccgttccaaa,gagttgagtacagctggtaatagtct -olivar-ref,olivar-ref_130,2,ggagtaaaagactgtgttgtattacaca,cagtacgcacacaatcgaagc,25978,26006,26351,26372,ggagtaaaagactgtgttgtattacacagttacttcacttcagactattaccagctgtactcaactcaattgagtacagacaCtggtgttgaacatgttaccttcttcatctacaataaaattgttgatGagcctgaagaacatgtccaaattcacacaatcgacggttcatccggagttgttaatccagtaatggaaccaatttatgatgaaccgacgacgactactagcgtgcctttgtaagcacaagctgatgagtacgaacttatgtactcattcgtttcggaagagaCaggtacgttaatagttaatagcgtacttctttttcttgctttcgtggtattcttgctagttacactagccatccttactgcgcttcgattgtgtgcgtactg,gttacttcacttcagactattaccagctgtactcaactcaattgagtacagacaCtggtgttgaacatgttaccttcttcatctacaataaaattgttgatGagcctgaagaacatgtccaaattcacacaatcgacggttcatccggagttgttaatccagtaatggaaccaatttatgatgaaccgacgacgactactagcgtgcctttgtaagcacaagctgatgagtacgaacttatgtactcattcgtttcggaagagaCaggtacgttaatagttaatagcgtacttctttttcttgctttcgtggtattcttgctagttacactagccatccttactgc,ggagtaaaagactgtgttgtattacaca,cagtacgcacacaatcgaagc -olivar-ref,olivar-ref_131,1,acgaacttatgtactcattcgtttcg,caaatccatgtaaggaataggaaacctatta,26237,26263,26589,26620,acgaacttatgtactcattcgtttcggaagagaCaggtacgttaatagttaatagcgtacttctttttcttgctttcgtggtattcttgctagttacactagccatccttactgcgcttcgattgtgtgcgtactgctgcaatattgttaacgtgagtcttgtaaaaccttctttttacgtttactctcgtgttaaaaatctgaattcttctagagttcctgatcttctggtctaaacgaactaaatattatattagtttttctgtttggaactttaattttagcCatggcagAttccaacggtactattaccgttgaagagcttaaaaagctccttgaaCaatggaacctagtaataggtttcctattccttacatggatttg,gaagagaCaggtacgttaatagttaatagcgtacttctttttcttgctttcgtggtattcttgctagttacactagccatccttactgcgcttcgattgtgtgcgtactgctgcaatattgttaacgtgagtcttgtaaaaccttctttttacgtttactctcgtgttaaaaatctgaattcttctagagttcctgatcttctggtctaaacgaactaaatattatattagtttttctgtttggaactttaattttagcCatggcagAttccaacggtactattaccgttgaagagcttaaaaagctccttgaaCaatggaacctag,acgaacttatgtactcattcgtttcg,caaatccatgtaaggaataggaaacctatta -olivar-ref,olivar-ref_132,2,actctcgtgttaaaaatctgaattcttcta,agcaatgaagtagctgagcca,26420,26450,26795,26816,actctcgtgttaaaaatctgaattcttctagagttcctgatcttctggtctaaacgaactaaatattatattagtttttctgtttggaactttaattttagcCatggcagAttccaacggtactattaccgttgaagagcttaaaaagctccttgaaCaatggaacctagtaataggtttcctattccttacatggatttgtcttctacaatttgcctatgccaacaggaataggtttttgtatataattaagttaattttcctctggctgttatggccagtaactttaGcttgttttgtgcttgctgctgtttacagaataaattggatcaccggtggaattgctaTcgcaatggcttgtcttgtaggcttgatgtggctcagctacttcattgct,gagttcctgatcttctggtctaaacgaactaaatattatattagtttttctgtttggaactttaattttagcCatggcagAttccaacggtactattaccgttgaagagcttaaaaagctccttgaaCaatggaacctagtaataggtttcctattccttacatggatttgtcttctacaatttgcctatgccaacaggaataggtttttgtatataattaagttaattttcctctggctgttatggccagtaactttaGcttgttttgtgcttgctgctgtttacagaataaattggatcaccggtggaattgctaTcgcaatggcttgtcttgtaggcttgatg,actctcgtgttaaaaatctgaattcttcta,agcaatgaagtagctgagcca -olivar-ref,olivar-ref_133,1,gctgctgtttacagaataaattggatca,gatcacagctccgattacgagt,26724,26752,26932,26954,gctgctgtttacagaataaattggatcaccggtggaattgctaTcgcaatggcttgtcttgtaggcttgatgtggctcagctacttcattgcttctttcagactgtttgcgcgtacgcgttccatgtggtcattCaatccagaaactaacattcttctcaacgtgccactccatggcactattctgaccagaccgcttctagaaagtgaactcgtaatcggagctgtgatc,ccggtggaattgctaTcgcaatggcttgtcttgtaggcttgatgtggctcagctacttcattgcttctttcagactgtttgcgcgtacgcgttccatgtggtcattCaatccagaaactaacattcttctcaacgtgccactccatggcactattctgaccagaccgcttctagaaagtga,gctgctgtttacagaataaattggatca,gatcacagctccgattacgagt -olivar-ref,olivar-ref_134,2,cgtgccactccatggca,tgtagcgactgtatgcagcaa,26885,26902,27099,27120,cgtgccactccatggcactattctgaccagaccgcttctagaaagtgaactcgtaatcggagctgtgatccttcgtggacatcttcgtattgctggacaccatctaggacgctgtgacatCaaggacctgcctaaagaaatcactgttgctacatcacgaacgctttcttattacaaattgggagcttcgcagcgtgtagcaggtgactcaggttttgctgcatacagtcgctaca,ctattctgaccagaccgcttctagaaagtgaactcgtaatcggagctgtgatccttcgtggacatcttcgtattgctggacaccatctaggacgctgtgacatCaaggacctgcctaaagaaatcactgttgctacatcacgaacgctttcttattacaaattgggagcttcgcagcgtgtagcaggtgactcaggtt,cgtgccactccatggca,tgtagcgactgtatgcagcaa -olivar-ref,olivar-ref_135,1,tgggagcttcgcagcg,gcgagtgttatcagtgccaag,27064,27080,27410,27431,tgggagcttcgcagcgtgtagcaggtgactcaggttttgctgcatacagtcgctacaggattggcaactataaattaaacacagaccattccagtagcagtgacaatattgctttgcttgtacagtaagtgacaacagatgtttcatctcgttgactttcaggttactatagcagagatattactaattattatgAggacttttaaagtttccatttggaatcttgaTtacatcataaacctcataattaaaaatttatctaagtcactaactgagaataaAtattctcaattagatgaagagcaaccaatggagattGATtaaacgaacatgaaaattattcttttcttggcactgataacactcgc,tgtagcaggtgactcaggttttgctgcatacagtcgctacaggattggcaactataaattaaacacagaccattccagtagcagtgacaatattgctttgcttgtacagtaagtgacaacagatgtttcatctcgttgactttcaggttactatagcagagatattactaattattatgAggacttttaaagtttccatttggaatcttgaTtacatcataaacctcataattaaaaatttatctaagtcactaactgagaataaAtattctcaattagatgaagagcaaccaatggagattGATtaaacgaacatgaaaattattctttt,tgggagcttcgcagcg,gcgagtgttatcagtgccaag -olivar-ref,olivar-ref_136,2,gacaatattgctttgcttgtacagtaag,gctagaggatgaaatGgtgaattgc,27165,27193,27517,27542,gacaatattgctttgcttgtacagtaagtgacaacagatgtttcatctcgttgactttcaggttactatagcagagatattactaattattatgAggacttttaaagtttccatttggaatcttgaTtacatcataaacctcataattaaaaatttatctaagtcactaactgagaataaAtattctcaattagatgaagagcaaccaatggagattGATtaaacgaacatgaaaattattcttttcttggcactgataacactcgctacttgtgagctttatcactaccaagagtgtgttagaggtacaacagtacttttaaaagaaccttgctcttctggAacatacgagggcaattcacCatttcatcctctagc,tgacaacagatgtttcatctcgttgactttcaggttactatagcagagatattactaattattatgAggacttttaaagtttccatttggaatcttgaTtacatcataaacctcataattaaaaatttatctaagtcactaactgagaataaAtattctcaattagatgaagagcaaccaatggagattGATtaaacgaacatgaaaattattcttttcttggcactgataacactcgctacttgtgagctttatcactaccaagagtgtgttagaggtacaacagtacttttaaaagaaccttgctcttctggAacatacgagg,gacaatattgctttgcttgtacagtaag,gctagaggatgaaatGgtgaattgc -olivar-ref,olivar-ref_137,1,gtgtgttagaggtacaacagtacttttaaa,acaaatagaagtcaattaatgaaagttcaatca,27459,27489,27756,27789,gtgtgttagaggtacaacagtacttttaaaagaaccttgctcttctggAacatacgagggcaattcacCatttcatcctctagctgataacaaatttgcactgacTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTacgtgccagatcagTttcacctaaactgttcatcagacaagaggaagttcaagaactttactctccaatttttcttattgttgcggcaatagtgtttataacactttgcttcacaCtcaaaagaaagaCagaatgattgaactttcattaattgacttctatttgt,agaaccttgctcttctggAacatacgagggcaattcacCatttcatcctctagctgataacaaatttgcactgacTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTacgtgccagatcagTttcacctaaactgttcatcagacaagaggaagttcaagaactttactctccaatttttcttattgttgcggcaatagtgtttataacactttgcttcacaCtcaaaagaaagaCagaa,gtgtgttagaggtacaacagtacttttaaa,acaaatagaagtcaattaatgaaagttcaatca -olivar-ref,olivar-ref_138,2,tcttattgttgcggcaatagtgttta,catgactgtaaactacattcttggtgaa,27696,27722,27939,27967,tcttattgttgcggcaatagtgtttataacactttgcttcacaCtcaaaagaaagaCagaatgattgaactttcattaattgacttctatttgtgctttttagcctttctgCtattccttgttttaattatgcttattatcttttggttctcacttgaactgcaagatcataatgaaaCttgtcacgcctaaacgaacatgaaatttcttgttttcttaggaatcatcacaactgtagctgcatttcaccaagaatgtagtttacagtcatg,taacactttgcttcacaCtcaaaagaaagaCagaatgattgaactttcattaattgacttctatttgtgctttttagcctttctgCtattccttgttttaattatgcttattatcttttggttctcacttgaactgcaagatcataatgaaaCttgtcacgcctaaacgaacatgaaatttcttgttttcttaggaatcatcacaactgtagctgcat,tcttattgttgcggcaatagtgttta,catgactgtaaactacattcttggtgaa -olivar-ref,olivar-ref_139,1,gttctcacttgaactgcaagatcataat,catgatactctaaaaagtcttcatagaacga,27842,27870,28199,28230,gttctcacttgaactgcaagatcataatgaaaCttgtcacgcctaaacgaacatgaaatttcttgttttcttaggaatcatcacaactgtagctgcatttcaccaagaatgtagtttacagtcatgtactcaacatcaaccatatgtagttgatgacccgtgtccTattcacttctattctaaatggtatattagagtaggagctagaaaatcagcacctttaattgaattGtgcgtggatgagGctggttctaaatcacccattcagtacatcgatatcggtaattatacagtttcctgtttaccttttacaattaattgccaggaaCctaaattgggtagtcttgtagtgcgttgttcgttctatgaagactttttagagtatcatg,gaaaCttgtcacgcctaaacgaacatgaaatttcttgttttcttaggaatcatcacaactgtagctgcatttcaccaagaatgtagtttacagtcatgtactcaacatcaaccatatgtagttgatgacccgtgtccTattcacttctattctaaatggtatattagagtaggagctagaaaatcagcacctttaattgaattGtgcgtggatgagGctggttctaaatcacccattcagtacatcgatatcggtaattatacagtttcctgtttaccttttacaattaattgccaggaaCctaaattgggtagtcttgtagtgcgttgt,gttctcacttgaactgcaagatcataat,catgatactctaaaaagtcttcatagaacga -olivar-ref,olivar-ref_140,2,catcgatatcggtaattatacagtttcctg,ctattggtgttaattggaacgcct,28112,28142,28482,28506,catcgatatcggtaattatacagtttcctgtttaccttttacaattaattgccaggaaCctaaattgggtagtcttgtagtgcgttgttcgttctatgaagactttttagagtatcatgacgttcgtgttgttttaGATTTCatctaaacgaacaaactAaaatgtctgataatggaccccaaaatcAgcgaaatgcacCccgcattacgtttgGtggaccctcagattcaactggcagtaaccagaatgGAGAACGCAgtggggcgcgatcaaaacaacgtcggccccaaggtttacccaataatactgcgtcttggttCaccgctctcactcaacatggcaaggaagAccttaaattcCctcgaggacaaggcgttccaattaacaccaatag,tttaccttttacaattaattgccaggaaCctaaattgggtagtcttgtagtgcgttgttcgttctatgaagactttttagagtatcatgacgttcgtgttgttttaGATTTCatctaaacgaacaaactAaaatgtctgataatggaccccaaaatcAgcgaaatgcacCccgcattacgtttgGtggaccctcagattcaactggcagtaaccagaatgGAGAACGCAgtggggcgcgatcaaaacaacgtcggccccaaggtttacccaataatactgcgtcttggttCaccgctctcactcaacatggcaaggaagAccttaaattcCctcgaggaca,catcgatatcggtaattatacagtttcctg,ctattggtgttaattggaacgcct -olivar-ref,olivar-ref_141,1,caaaacaacgtcggcccc,gcaacccatatgatgccgtcttt,28383,28401,28651,28674,caaaacaacgtcggccccaaggtttacccaataatactgcgtcttggttCaccgctctcactcaacatggcaaggaagAccttaaattcCctcgaggacaaggcgttccaattaacaccaatagcagtccagatgaccaaattggctactaccgaagagctaccagacgaattcgtggtggtgacggtaaaatgaaagatctcagtccaagatggtatttctactacctaggaactgggccagaagctggacttccctatggtgctaacaaagacggcatcatatgggttgc,aaggtttacccaataatactgcgtcttggttCaccgctctcactcaacatggcaaggaagAccttaaattcCctcgaggacaaggcgttccaattaacaccaatagcagtccagatgaccaaattggctactaccgaagagctaccagacgaattcgtggtggtgacggtaaaatgaaagatctcagtccaagatggtatttctactacctaggaactgggccagaagctggacttccctatggtgctaac,caaaacaacgtcggcccc,gcaacccatatgatgccgtcttt -olivar-ref,olivar-ref_142,2,aattcgtggtggtgacggtaa,tgaactgttgcgactacgtgat,28552,28573,28833,28855,aattcgtggtggtgacggtaaaatgaaagatctcagtccaagatggtatttctactacctaggaactgggccagaagctggacttccctatggtgctaacaaagacggcatcatatgggttgcaactgagggagccttgaatacaccaaaagatcacattggcacccgcaatcctgctaacaatgctgcaatcgtgctacaacttcctcaaggaacaacattgccaaaaggcttctacgcagaagggagcagaggcggcagtcaagcctcttctcgttcctcatcacgtagtcgcaacagttca,aatgaaagatctcagtccaagatggtatttctactacctaggaactgggccagaagctggacttccctatggtgctaacaaagacggcatcatatgggttgcaactgagggagccttgaatacaccaaaagatcacattggcacccgcaatcctgctaacaatgctgcaatcgtgctacaacttcctcaaggaacaacattgccaaaaggcttctacgcagaagggagcagaggcggcagtcaagcctcttctcgttcctc,aattcgtggtggtgacggtaa,tgaactgttgcgactacgtgat -olivar-ref,olivar-ref_143,1,tgctgcaatcgtgctacaact,cgaaagcttgtgttacattgtatgct,28735,28756,29070,29096,tgctgcaatcgtgctacaacttcctcaaggaacaacattgccaaaaggcttctacgcagaagggagcagaggcggcagtcaagcctcttctcgttcctcatcacgtagtcgcaacagttcaagaaattcaactccaggcagcAGtaGGGgaacttctcctGctagaatggctggcaatggcGgtgatgctgctcttgctttgctgctgcttgacagattgaaccagcttgagagcaaaatgtctggtaaaggccaacaacaacaaggccaaactgtcactaagaaatctgctgctgaggcttctaagaagcctcgGcaaaaacgtactgccactaaagcatacaatgtaacacaagctttcg,tcctcaaggaacaacattgccaaaaggcttctacgcagaagggagcagaggcggcagtcaagcctcttctcgttcctcatcacgtagtcgcaacagttcaagaaattcaactccaggcagcAGtaGGGgaacttctcctGctagaatggctggcaatggcGgtgatgctgctcttgctttgctgctgcttgacagattgaaccagcttgagagcaaaatgtctggtaaaggccaacaacaacaaggccaaactgtcactaagaaatctgctgctgaggcttctaagaagcctcgGcaaaaacgtactgccactaa,tgctgcaatcgtgctacaact,cgaaagcttgtgttacattgtatgct -olivar-ref,olivar-ref_144,2,gcaaaatgtctggtaaaggccaa,ccaatgcgcgacattccga,28968,28991,29216,29235,gcaaaatgtctggtaaaggccaacaacaacaaggccaaactgtcactaagaaatctgctgctgaggcttctaagaagcctcgGcaaaaacgtactgccactaaagcatacaatgtaacacaagctttcggcagacgtggtccagaacaaacccaaggaaattttggggaccaggaactaatcagacaaggaactgattacaaacattggccgcaaattgcacaatttgcccccagcgcttcagcgttcttcggaatgtcgcgcattgg,caacaacaaggccaaactgtcactaagaaatctgctgctgaggcttctaagaagcctcgGcaaaaacgtactgccactaaagcatacaatgtaacacaagctttcggcagacgtggtccagaacaaacccaaggaaattttggggaccaggaactaatcagacaaggaactgattacaaacattggccgcaaattgcacaatttgcccccagcgcttcagcgttct,gcaaaatgtctggtaaaggccaa,ccaatgcgcgacattccga -olivar-ref,olivar-ref_145,1,tgattacaaacattggccgcaa,ccaaatctgcagcaggaagaaga,29161,29183,29451,29474,tgattacaaacattggccgcaaattgcacaatttgcccccagcgcttcagcgttcttcggaatgtcgcgcattggcatggaagtcacaccttCgggaacgtggttgacctacacaggtgccatcaaattggatgacaaagAtccaaatttcaaagatcaagtcattttgctgaataagcatattgacgcatacaaaacattcccaccaacagagcctaaaaaggacaaaaagaagaaggctGatgaaactcaagccttaccgcagagacagaagaaacagcaaactgtgactcttcttcctgctgcagatttgg,attgcacaatttgcccccagcgcttcagcgttcttcggaatgtcgcgcattggcatggaagtcacaccttCgggaacgtggttgacctacacaggtgccatcaaattggatgacaaagAtccaaatttcaaagatcaagtcattttgctgaataagcatattgacgcatacaaaacattcccaccaacagagcctaaaaaggacaaaaagaagaaggctGatgaaactcaagccttaccgcagagacagaagaaacagcaaactgtgac,tgattacaaacattggccgcaa,ccaaatctgcagcaggaagaaga -olivar-ref,olivar-ref_146,2,agccttaccgcagagacaga,ttccatataggcagctctcccta,29413,29433,29774,29797,agccttaccgcagagacagaagaaacagcaaactgtgactcttcttcctgctgcagatttggatgatttctccaaacaattgcaacaatccatgagCAgtgctgactcaactcaggcctaaactcatgcagaccacacaaggcagatgggctatataaacgttttcgcttttccgtttacgatatatagtctactcttgtgcagaatgaattctcgtaaCtacatagcacaagtagatgtagttaactttaatctcacatagcaatctttaatcagtgtgtaacattAgggaggacttgaaagagccaccacattttcaccGAGGCCACGCGGAGTACGATCGAGTGtacagtgaacaatgctagggagagctgcctatatggaa,agaaacagcaaactgtgactcttcttcctgctgcagatttggatgatttctccaaacaattgcaacaatccatgagCAgtgctgactcaactcaggcctaaactcatgcagaccacacaaggcagatgggctatataaacgttttcgcttttccgtttacgatatatagtctactcttgtgcagaatgaattctcgtaaCtacatagcacaagtagatgtagttaactttaatctcacatagcaatctttaatcagtgtgtaacattAgggaggacttgaaagagccaccacattttcaccGAGGCCACGCGGAGTACGATCGAGTGtacagtgaacaatgc,agccttaccgcagagacaga,ttccatataggcagctctcccta diff --git a/example_output/olivar-design.json b/example_output/olivar-design.json deleted file mode 100644 index 7af924c..0000000 --- a/example_output/olivar-design.json +++ /dev/null @@ -1,23 +0,0 @@ -{ - "ref_path": "example_output/olivar-ref.olvr", - "out_path": "example_output", - "title": "olivar-design", - "max_amp_len": 420, - "min_amp_len": 252, - "w_egc": 1.0, - "w_lc": 1.0, - "w_ns": 1.0, - "w_var": 1.0, - "temperature": 60.0, - "salinity": 0.18, - "dG_max": -11.8, - "min_GC": 0.2, - "max_GC": 0.75, - "min_complexity": 0.4, - "max_len": 36, - "check_SNP": true, - "fP_prefix": "", - "rP_prefix": "", - "seed": 10, - "threads": 48 -} \ No newline at end of file diff --git a/example_output/olivar-design.olvd b/example_output/olivar-design.olvd deleted file mode 100644 index 2861074..0000000 Binary files a/example_output/olivar-design.olvd and /dev/null differ diff --git a/example_output/olivar-design.scheme.bed b/example_output/olivar-design.scheme.bed deleted file mode 100644 index d263e74..0000000 --- a/example_output/olivar-design.scheme.bed +++ /dev/null @@ -1,292 +0,0 @@ -olivar-ref 99 117 olivar-ref_1_LEFT 1 + CGGCTGCATGCTTAGTGC -olivar-ref 288 309 olivar-ref_2_LEFT 2 + CAACGAGAAAACACACGTCCA -olivar-ref 360 379 olivar-ref_1_RIGHT 1 - GACCTCCTCCACGGAGTCT -olivar-ref 471 493 olivar-ref_3_LEFT 1 + GTTCATCAAACGTTCGGATGCT -olivar-ref 538 559 olivar-ref_2_RIGHT 2 - ACCGTACTGAATGCCTTCGAG -olivar-ref 623 650 olivar-ref_4_LEFT 2 + AGGTTCTTCTTCGTAAGAACGGTAATA -olivar-ref 770 790 olivar-ref_3_RIGHT 1 - ACGCATGAGTTCACGGGTAA -olivar-ref 822 844 olivar-ref_5_LEFT 1 + CGATAACAACTTCTGTGGCCCT -olivar-ref 872 891 olivar-ref_4_RIGHT 2 - CCAGCACGTGCTAGAAGGT -olivar-ref 931 955 olivar-ref_6_LEFT 2 + GACACTAAGAGGGGTGTATACTGC -olivar-ref 1156 1182 olivar-ref_5_RIGHT 1 - ACTGGATAGACAGATCGAATTCTACC -olivar-ref 1237 1260 olivar-ref_7_LEFT 1 + CATTGTGGTGAAACTTCATGGCA -olivar-ref 1286 1307 olivar-ref_6_RIGHT 2 - TCTCAGTGCCACAAAATTCGC -olivar-ref 1406 1430 olivar-ref_8_LEFT 2 + AGCATAGTCTTGCCGAATACCATA -olivar-ref 1553 1578 olivar-ref_7_RIGHT 1 - ACACCTGTATGGTTACAACCTATGT -olivar-ref 1585 1609 olivar-ref_9_LEFT 1 + GAAGGTTCCGAAGGTCTTAATGAC -olivar-ref 1633 1661 olivar-ref_8_RIGHT 2 - CACCAACAATATTGATGTTGACTTTCTC -olivar-ref 1851 1875 olivar-ref_10_LEFT 2 + ACTGAGTCCTCTTTATGCATTTGC -olivar-ref 1892 1915 olivar-ref_9_RIGHT 1 - GCGGGAGAAAATTGATCGTACAA -olivar-ref 1953 1979 olivar-ref_11_LEFT 1 + GAAGGCCGCTATAACAATACTAGATG -olivar-ref 2098 2122 olivar-ref_10_RIGHT 2 - AGTGCCAAAGATGTTAGTTAGCCA -olivar-ref 2131 2154 olivar-ref_12_LEFT 2 + AAACTCAAACCCGTCCTTGATTG -olivar-ref 2248 2269 olivar-ref_11_RIGHT 1 - TGCACAGGTGACAATTTGTCC -olivar-ref 2352 2379 olivar-ref_13_LEFT 1 + TGGAGCTAAACTTAAAGCCTTGAATTT -olivar-ref 2480 2508 olivar-ref_12_RIGHT 2 - GGAAGTGTTTCTCCCTCTAAGAAGATAA -olivar-ref 2557 2584 olivar-ref_14_LEFT 2 + CCATTAGAACAACCTACTAGTGAAGCT -olivar-ref 2585 2608 olivar-ref_13_RIGHT 1 - TGTACCAACCAATGGAGCTTCAA -olivar-ref 2704 2722 olivar-ref_15_LEFT 1 + ACACTCAAAGGCGGTGCA -olivar-ref 2863 2887 olivar-ref_14_RIGHT 2 - AACACAGGCGAACTCATTTACTTC -olivar-ref 2901 2931 olivar-ref_16_LEFT 2 + CATAAAAACTTTGCAACCAGTATCTGAATT -olivar-ref 2943 2967 olivar-ref_15_RIGHT 1 - CTCCACTCATCTAAATCAATGCCC -olivar-ref 3088 3114 olivar-ref_17_LEFT 1 + GAGCCATCAACTCAATATGAGTATGG -olivar-ref 3285 3311 olivar-ref_16_RIGHT 2 - GTTCCATCTCTAATTGAGGTTGAACC -olivar-ref 3325 3357 olivar-ref_18_LEFT 2 + CAGACTATTGAAGTGAATAGTTTTAGTGGTTA -olivar-ref 3443 3469 olivar-ref_17_RIGHT 1 - TCCATGTTTAAGGTAAACATTGGCTG -olivar-ref 3547 3569 olivar-ref_19_LEFT 1 + GGACCACTTAAAGTGGGTGGTA -olivar-ref 3597 3621 olivar-ref_18_RIGHT 2 - CCGACAACATGAAGACAGTGTTTA -olivar-ref 3684 3705 olivar-ref_20_LEFT 2 + GCACGAAGTTCTACTTGCACC -olivar-ref 3771 3795 olivar-ref_19_RIGHT 1 - ACAGCTAAGTAGACATTTGTGCGA -olivar-ref 3986 4012 olivar-ref_21_LEFT 1 + CAACTCTGGAAGAAACTAAGTTCCTC -olivar-ref 4025 4058 olivar-ref_20_RIGHT 2 - GATGAAGATTGCCATTAATGTCAATATAAAGTA -olivar-ref 4186 4207 olivar-ref_22_LEFT 2 + GGCACTACTGAAATGCTAGCG -olivar-ref 4278 4300 olivar-ref_21_RIGHT 1 - CACTGTCTTTGCCTCCTCTACA -olivar-ref 4454 4486 olivar-ref_23_LEFT 1 + CCATAGTTTCAACTATACAGCGTAAATATAAG -olivar-ref 4545 4572 olivar-ref_22_RIGHT 2 - TTGATAAGTGACGCTACAGTTGTTTTA -olivar-ref 4705 4731 olivar-ref_24_LEFT 2 + GATGCTGTTACAGCGTATAATGGTTA -olivar-ref 4796 4825 olivar-ref_23_RIGHT 1 - AGATTGTCCAGAATAGGACCAATCTTTAT -olivar-ref 4880 4905 olivar-ref_25_LEFT 1 + GTAATCCTACCACATTCCACCTAGA -olivar-ref 4995 5016 olivar-ref_24_RIGHT 2 - ACAACTTGCGTGTGGAGGTTA -olivar-ref 5044 5069 olivar-ref_26_LEFT 2 + TTTGGTCCAACTTATTTGGATGGAG -olivar-ref 5140 5163 olivar-ref_25_RIGHT 1 - TCAAAAGCCTCAACACGTAGAGT -olivar-ref 5338 5360 olivar-ref_27_LEFT 1 + CCACCTGCTCTACAAGATGCTT -olivar-ref 5395 5419 olivar-ref_26_RIGHT 2 - ACAGTAGGCTAAGATAAGTGCACA -olivar-ref 5442 5473 olivar-ref_28_LEFT 2 + TGATGTTAGAGAAACAATGAGTTACTTGTTT -olivar-ref 5549 5576 olivar-ref_27_RIGHT 1 - TGTACATAACAGCTTCTACACCCTTAA -olivar-ref 5626 5652 olivar-ref_29_LEFT 1 + ACGTGTGGTAAACAAGCTACAAAATA -olivar-ref 5794 5817 olivar-ref_28_RIGHT 2 - GCACCGTCTATGCAATACAAAGT -olivar-ref 5883 5915 olivar-ref_30_LEFT 2 + CACAACAACCATAAAACCAGTTACTTATAAAT -olivar-ref 6000 6026 olivar-ref_29_RIGHT 1 - GATATGGTTGGTTTGGTACAAGATCA -olivar-ref 6092 6120 olivar-ref_31_LEFT 1 + AGTTAACTGGTTATAAGAAACCTGCTTC -olivar-ref 6167 6195 olivar-ref_30_RIGHT 2 - GGTGTGTAGTGTTTATAATCAATAGCCA -olivar-ref 6277 6303 olivar-ref_32_LEFT 2 + CCAAATACCTGGTGTATACGTTGTCT -olivar-ref 6353 6369 olivar-ref_31_RIGHT 1 - CCCTGCGCGTCCTCTG -olivar-ref 6450 6476 olivar-ref_33_LEFT 1 + TGAGTGTAATGTGAAAACTACCGAAG -olivar-ref 6544 6571 olivar-ref_32_RIGHT 2 - ATTGTCTACATAAGCAGCCATTAGATC -olivar-ref 6626 6649 olivar-ref_34_LEFT 2 + CCCTTGCTACTCATGGTTTAGCT -olivar-ref 6668 6697 olivar-ref_33_RIGHT 1 - AGGCTTAGCATAATTAGCTATAGTATCCC -olivar-ref 6716 6744 olivar-ref_35_LEFT 1 + GTACAACTACTAACATAGTTACACGGTG -olivar-ref 6863 6893 olivar-ref_34_RIGHT 2 - AAAATTTACCGACACTCTTAACAGTATTCT -olivar-ref 6984 7009 olivar-ref_36_LEFT 2 + AGGTTCTTTAATCTACTCAACCGCT -olivar-ref 7063 7092 olivar-ref_35_RIGHT 1 - ACATTAGTAGAGTTCAAATAGCCTTCTCT -olivar-ref 7237 7266 olivar-ref_37_LEFT 1 + GCAGAGTGGTTTTTGGCATATATTCTTTT -olivar-ref 7288 7308 olivar-ref_36_RIGHT 2 - TGCATGATTGCAGCCAATCC -olivar-ref 7462 7489 olivar-ref_38_LEFT 2 + GTTGTAGACGGTTGTAATTCATCAACT -olivar-ref 7509 7537 olivar-ref_37_RIGHT 1 - TGTACATTCGACTCTTGTTGCTCTATTA -olivar-ref 7637 7665 olivar-ref_39_LEFT 1 + TCTGTGCTGGTAGTACATTTATTAGTGA -olivar-ref 7717 7743 olivar-ref_38_RIGHT 2 - CTATCAACGATGTAAGAAGACTGGTC -olivar-ref 7779 7807 olivar-ref_40_LEFT 2 + TGATAAAGCTGGTCAAAAGACTTATGAA -olivar-ref 7946 7969 olivar-ref_39_RIGHT 1 - AGGTTGACACATAAGCTGACTGT -olivar-ref 8006 8027 olivar-ref_41_LEFT 1 + GTGATAGTGCGGAAGTTGCAG -olivar-ref 8124 8150 olivar-ref_40_RIGHT 2 - CATTGTCTAAGGACACATTCTTTGCA -olivar-ref 8254 8286 olivar-ref_42_LEFT 2 + GAAGTTACTGGCGATAGTTGTAATAACTATAT -olivar-ref 8363 8384 olivar-ref_41_RIGHT 1 - GACTTTTTGCTACCTGCGCAT -olivar-ref 8435 8461 olivar-ref_43_LEFT 1 + AACTACGAAAACAAATACGTAGTGCT -olivar-ref 8490 8516 olivar-ref_42_RIGHT 2 - CAACTTGTCTAGTAGTTGCACATGTC -olivar-ref 8647 8676 olivar-ref_44_LEFT 2 + GTCATGTCTAAACATACTGACTTTTCAAG -olivar-ref 8697 8720 olivar-ref_43_RIGHT 1 - CACGAGTGACACCACCATCAATA -olivar-ref 8850 8870 olivar-ref_45_LEFT 1 + GGGTTTTGTCGTGCCTGGTT -olivar-ref 8931 8957 olivar-ref_44_RIGHT 2 - TGTAACAGATGTTACCAACTGCACTA -olivar-ref 9010 9039 olivar-ref_46_LEFT 2 + GCTGCTGAATGTACAATTTTTAAAGATGC -olivar-ref 9103 9123 olivar-ref_45_RIGHT 1 - CGTGTGTCAGGGCGTAAACT -olivar-ref 9160 9185 olivar-ref_47_LEFT 1 + AACACCTACCTTGAAGGTTCTGTTA -olivar-ref 9268 9299 olivar-ref_46_RIGHT 2 - TGTAATAATCATTGTTAAGTACCCATCTACC -olivar-ref 9395 9418 olivar-ref_48_LEFT 2 + CAGCATCTATAGTAGCTGGTGGT -olivar-ref 9441 9470 olivar-ref_47_RIGHT 1 - TTCTAAACCTCATAAAATAGTAGGCAAGG -olivar-ref 9640 9665 olivar-ref_49_LEFT 1 + ATTCAGTGGATGGTTATGTTCACAC -olivar-ref 9740 9770 olivar-ref_48_RIGHT 2 - CATTAAAGACTACACGTCTCTTTAGGTAAT -olivar-ref 9902 9929 olivar-ref_50_LEFT 2 + AGTACAAGTATTTTAGTGGAGCAATGG -olivar-ref 9941 9963 olivar-ref_49_RIGHT 1 - TGACAACAAGCAGCTTCTCTGT -olivar-ref 10070 10092 olivar-ref_51_LEFT 1 + TGGCATTCCCATCTGGTAAAGT -olivar-ref 10143 10168 olivar-ref_50_RIGHT 2 - ACAGTAAACTACGTCATCAAGCCAA -olivar-ref 10251 10274 olivar-ref_52_LEFT 2 + CTTGGTACAGGCTGGTAATGTTC -olivar-ref 10359 10381 olivar-ref_51_RIGHT 1 - TCCTGGTTGAATGCGAACAAAC -olivar-ref 10556 10576 olivar-ref_53_LEFT 1 + CAACTGGAGTTCATGCTGGC -olivar-ref 10634 10659 olivar-ref_52_RIGHT 2 - ACTGTAATAGTTGTGTCCGTACCAG -olivar-ref 10716 10746 olivar-ref_54_LEFT 2 + TCGATTTACCACAACTCTTAATGACTTTAA -olivar-ref 10777 10803 olivar-ref_53_RIGHT 1 - AGTATGTCAACATGGTCTTGTGTTAG -olivar-ref 10885 10908 olivar-ref_55_LEFT 1 + GGACGTACCATATTGGGTAGTGC -olivar-ref 11000 11022 olivar-ref_54_RIGHT 2 - GTGAGTAACAACCAGTGGTGTG -olivar-ref 11144 11170 olivar-ref_56_LEFT 2 + TGTTTGTCAAACATAAGCATGCATTT -olivar-ref 11234 11259 olivar-ref_55_RIGHT 1 - GTCATAATACGCATCACCCAACTAG -olivar-ref 11343 11369 olivar-ref_57_LEFT 1 + CCTTATGACAGCAAGAACTGTGTATG -olivar-ref 11466 11497 olivar-ref_56_RIGHT 2 - GTAGTTAGAAGTAACAGAGATTATAAGAGCC -olivar-ref 11587 11617 olivar-ref_58_LEFT 2 + ACACTTCAGTGTATAATGCTAGTTTATTGT -olivar-ref 11671 11700 olivar-ref_57_RIGHT 1 - TCATAAACACCAAGAGTCAGTCTAAAGTA -olivar-ref 11814 11838 olivar-ref_59_LEFT 1 + ACCTTGTATCAAAGTAGCCACTGT -olivar-ref 11866 11894 olivar-ref_58_RIGHT 2 - GCAAAACTGAGAGTAAGACTACTGATGT -olivar-ref 11912 11938 olivar-ref_60_LEFT 2 + CATCATCTAAATTGTGGGCTCAATGT -olivar-ref 12074 12094 olivar-ref_59_RIGHT 1 - AGCTTGTAAGGTTGCCCTGT -olivar-ref 12157 12177 olivar-ref_61_LEFT 1 + GAGCAGGCTGTTGCTAATGG -olivar-ref 12255 12279 olivar-ref_60_RIGHT 2 - GCCATCTTTTCCAACTTACGTTGC -olivar-ref 12307 12330 olivar-ref_62_LEFT 2 + CAGGCTAGATCTGAGGACAAGAG -olivar-ref 12448 12471 olivar-ref_61_RIGHT 1 - TTGGCTGCTGTTGTAAGAGGTAT -olivar-ref 12538 12560 olivar-ref_63_LEFT 1 + GCATCAGCATTGTGGGAAATCC -olivar-ref 12616 12641 olivar-ref_62_RIGHT 2 - GAGGCCATGCTAAATTAGGTGAATT -olivar-ref 12720 12740 olivar-ref_64_LEFT 2 + GTCTTGTGCTGCCGGTACTA -olivar-ref 12755 12779 olivar-ref_63_RIGHT 1 - AGTAAGCTAACGCATTGTCATCAG -olivar-ref 12847 12872 olivar-ref_65_LEFT 1 + AGATTCCCTAAGAGTGATGGAACTG -olivar-ref 13033 13051 olivar-ref_64_RIGHT 2 - GGCAGGCACTTCTGTTGC -olivar-ref 13084 13110 olivar-ref_66_LEFT 2 + GTAGATGCTGCTAAAGCTTACAAAGA -olivar-ref 13117 13137 olivar-ref_65_RIGHT 1 - ATTGGTTGTCCCCCACTAGC -olivar-ref 13247 13266 olivar-ref_67_LEFT 1 + TGTACTGCCGTTGCCACAT -olivar-ref 13456 13478 olivar-ref_66_RIGHT 2 - CCGCAAACCCGTTTAAAAACGA -olivar-ref 13501 13516 olivar-ref_68_LEFT 2 + CGTGCGGCACAGGCA -olivar-ref 13590 13615 olivar-ref_67_RIGHT 1 - TTTCTTGGAAGCGACAACAATTAGT -olivar-ref 13638 13668 olivar-ref_69_LEFT 1 + GATTCTTACTTTGTAGTTAAGAGACACACT -olivar-ref 13789 13816 olivar-ref_68_RIGHT 2 - CTGCCATTGTGTATTTAGTAAGACGTT -olivar-ref 13842 13874 olivar-ref_70_LEFT 2 + GATGAAGGTAATTGTGACACATTAAAAGAAAT -olivar-ref 13963 13983 olivar-ref_69_RIGHT 1 - ACGTTCACCTAAGTTGGCGT -olivar-ref 14042 14071 olivar-ref_71_LEFT 1 + TGTTGGTGTACTGACATTAGATAATCAAG -olivar-ref 14112 14130 olivar-ref_70_RIGHT 2 - TCCACTACCTGGCGTGGT -olivar-ref 14208 14234 olivar-ref_72_LEFT 2 + GTTGACACTGACTTAACAAAGCCTTA -olivar-ref 14344 14366 olivar-ref_71_RIGHT 1 - TGCAGAATGCATCTGTCATCCA -olivar-ref 14469 14493 olivar-ref_73_LEFT 1 + ACTGGATACCACTTCAGAGAGCTA -olivar-ref 14565 14584 olivar-ref_72_RIGHT 2 - CGTGCATAGCAGGGTCAGC -olivar-ref 14611 14632 olivar-ref_74_LEFT 2 + AACGCACTACGTGCTTTTCAG -olivar-ref 14802 14833 olivar-ref_73_RIGHT 1 - CACACATTGTTGGTAGATTATAACGATAGTA -olivar-ref 14844 14877 olivar-ref_75_LEFT 1 + CTACTATTTGTAGTTGAAGTTGTTGATAAGTAC -olivar-ref 14885 14909 olivar-ref_74_RIGHT 2 - GCATTAATACAGCCACCATCGTAA -olivar-ref 15009 15036 olivar-ref_76_LEFT 2 + CAAGATGCACTTTTCGCATATACAAAA -olivar-ref 15090 15112 olivar-ref_75_RIGHT 1 - CTACGGTGCGAGCTCTATTCTT -olivar-ref 15283 15308 olivar-ref_77_LEFT 1 + TGGGTTGGGATTATCCTAAATGTGA -olivar-ref 15379 15404 olivar-ref_76_RIGHT 2 - AATCTATAGAAACGGTGTGACAAGC -olivar-ref 15470 15492 olivar-ref_78_LEFT 2 + AGGTGGAACCTCATCAGGAGAT -olivar-ref 15568 15594 olivar-ref_77_RIGHT 1 - CTTATCGGCAATTTTGTTACCATCAG -olivar-ref 15679 15711 olivar-ref_79_LEFT 1 + CATATTTGCGTAAACATTTCTCAATGATGATA -olivar-ref 15836 15862 olivar-ref_78_RIGHT 2 - CTTTAGTAAGGTCAGTCTCAGTCCAA -olivar-ref 15971 16000 olivar-ref_80_LEFT 2 + AGATGATATCGTAAAAACAGATGGTACAC -olivar-ref 16004 16028 olivar-ref_79_RIGHT 1 - GCTAAAGACACGAACCGTTCAATC -olivar-ref 16203 16225 olivar-ref_81_LEFT 1 + GAGGCTATGTACACACCGCATA -olivar-ref 16335 16367 olivar-ref_80_RIGHT 2 - GACAAGACTAATTTATGTGATGTTGATATGAC -olivar-ref 16400 16425 olivar-ref_82_LEFT 2 + TGATGTCACAGATGTGACTCAACTT -olivar-ref 16539 16567 olivar-ref_81_RIGHT 1 - TTGCAATTGCATTAAAGTCAGTAACATT -olivar-ref 16687 16709 olivar-ref_83_LEFT 1 + TTGCTACTGTACGTGAAGTGCT -olivar-ref 16762 16793 olivar-ref_82_RIGHT 2 - CGATAACCAGTAAAGACATAATTTCGGTTAA -olivar-ref 16835 16860 olivar-ref_84_LEFT 2 + TGAAAAAGGTGACTATGGTGATGCT -olivar-ref 16963 16990 olivar-ref_83_RIGHT 1 - AGCCAGTAATTCTAACATAGTGCTCTT -olivar-ref 17079 17100 olivar-ref_85_LEFT 1 + GGACCACCTGGTACTGGTAAG -olivar-ref 17160 17178 olivar-ref_84_RIGHT 2 - AACAGCGGCATGAGAGCA -olivar-ref 17369 17395 olivar-ref_86_LEFT 2 + GGCCACAAATTATGATTTGAGTGTTG -olivar-ref 17442 17462 olivar-ref_85_RIGHT 1 - CGTGGTGCAGGTAATTGAGC -olivar-ref 17553 17572 olivar-ref_87_LEFT 1 + ACTTGTCGGCGTTGTCCTG -olivar-ref 17685 17709 olivar-ref_86_RIGHT 2 - TGGCCTGTTAATTGCAGATGAAAC -olivar-ref 17718 17745 olivar-ref_88_LEFT 2 + GTGGTAAGAGAATTCCTTACACGTAAC -olivar-ref 17803 17828 olivar-ref_87_RIGHT 1 - TGAGTTGGTAGTCCCAAAATCTTTG -olivar-ref 17850 17882 olivar-ref_89_LEFT 1 + TCAGAATATGACTATGTCATATTCACTCAAAC -olivar-ref 18012 18032 olivar-ref_88_RIGHT 2 - GTTGCCACATTCCTACGTGG -olivar-ref 18045 18077 olivar-ref_90_LEFT 2 + AATGTAACAGGACTCTTTAAAGATTGTAGTAA -olivar-ref 18113 18138 olivar-ref_89_RIGHT 1 - GAATTTAGTGTCAACACTGAGGTGT -olivar-ref 18246 18268 olivar-ref_91_LEFT 1 + CCTAACATGTTTATCACCCGCG -olivar-ref 18293 18314 olivar-ref_90_RIGHT 2 - TCGACATCGAAGCCAATCCAT -olivar-ref 18386 18411 olivar-ref_92_LEFT 2 + CCTAGTTGCTGTACCTACAGGTTAT -olivar-ref 18459 18483 olivar-ref_91_RIGHT 1 - GTGTTTAAATTGATCTCCAGGCGG -olivar-ref 18599 18624 olivar-ref_93_LEFT 1 + ACATGGCTTTGAGTTGACATCTATG -olivar-ref 18689 18713 olivar-ref_92_RIGHT 2 - GCATAAGTGTCTGAAGCAGTGGAA -olivar-ref 18822 18846 olivar-ref_94_LEFT 2 + CAAGTCCATGGTAATGCACATGTA -olivar-ref 18896 18918 olivar-ref_93_RIGHT 1 - AGTCCAGTCAACACGCTTAACA -olivar-ref 18939 18963 olivar-ref_95_LEFT 1 + GATGAACTGAAGATTAATGCGGCT -olivar-ref 19048 19075 olivar-ref_94_RIGHT 2 - CATCAGCTTGAGGTACACACTTAATAG -olivar-ref 19085 19109 olivar-ref_96_LEFT 2 + GTTCTATGATGCACAGCCTTGTAG -olivar-ref 19183 19207 olivar-ref_95_RIGHT 1 - CGACATTGCAATTCCAAAATAGGC -olivar-ref 19237 19264 olivar-ref_97_LEFT 1 + GATTTGACACTAGAGTGCTATCTAACC -olivar-ref 19432 19456 olivar-ref_96_RIGHT 2 - ACGTAGCAGACTTTAGTGGTACAT -olivar-ref 19492 19519 olivar-ref_98_LEFT 2 + GACATCATGCTAATGAGTACAGATTGT -olivar-ref 19552 19576 olivar-ref_97_RIGHT 1 - GTTTGTAAACCCACAAGCTAAAGC -olivar-ref 19688 19722 olivar-ref_99_LEFT 1 + AGTTTCTATCATTAATAACACTGTTTACACAAAA -olivar-ref 19796 19820 olivar-ref_98_RIGHT 2 - GGTACTGGTTTAATGTTGCGCTTA -olivar-ref 19864 19890 olivar-ref_100_LEFT 2 + ATACTGTGATCTGGGACTACAAAAGA -olivar-ref 20061 20088 olivar-ref_99_RIGHT 1 - ACCTACAGATGGTTGTAAACCTTTAAC -olivar-ref 20115 20142 olivar-ref_101_LEFT 1 + ACATTAATTGGAGAAGCCGTAAAAACA -olivar-ref 20159 20183 olivar-ref_100_RIGHT 2 - TGTTGGACAACACCATCAACTTTC -olivar-ref 20281 20311 olivar-ref_102_LEFT 2 + TCATTGAACGGTATAAATTAGAAGGCTATG -olivar-ref 20354 20379 olivar-ref_101_RIGHT 1 - TCCAATCAGTAGATGTAAACCACCT -olivar-ref 20430 20462 olivar-ref_103_LEFT 1 + ATGGACAGTACAGTTAAAAACTATTTCATAAC -olivar-ref 20656 20678 olivar-ref_102_RIGHT 2 - GGTTGCCACGCTTGACTAGATT -olivar-ref 20717 20746 olivar-ref_104_LEFT 2 + GCTATTAGAAAAGTGTGACCTTCAAAATT -olivar-ref 20756 20783 olivar-ref_103_RIGHT 1 - ATCATTATGCCTTTAGGTAATGTTGCA -olivar-ref 20887 20907 olivar-ref_105_LEFT 1 + GAGTTGCACCAGGTACAGCT -olivar-ref 21046 21077 olivar-ref_104_RIGHT 2 - GTAACATTTTTAGTCTTAGGGTCGTACATAT -olivar-ref 21093 21121 olivar-ref_106_LEFT 2 + AAAGAGGGTTTTTTCACTTACATTTGTG -olivar-ref 21201 21221 olivar-ref_105_RIGHT 1 - GCGAAGTGTCCCATGAGCTT -olivar-ref 21294 21315 olivar-ref_107_LEFT 1 + GGCAAACCACGCGAACAAATA -olivar-ref 21416 21441 olivar-ref_106_RIGHT 2 - AGACATAACAGCAGTACCCCTTAAT -olivar-ref 21516 21547 olivar-ref_108_LEFT 2 + AGAGTTGTTATTTCTAGTGATGTTCTTGTTA -olivar-ref 21669 21697 olivar-ref_107_RIGHT 1 - GGATCTGAAAACTTTGTCAGGGTAATAA -olivar-ref 21716 21742 olivar-ref_109_LEFT 1 + AGGACTTGTTCTTACCTTTCTTTTCC -olivar-ref 21803 21828 olivar-ref_108_RIGHT 2 - CCATCATTAAATGGTAGGACAGGGT -olivar-ref 21897 21921 olivar-ref_110_LEFT 2 + GAAGACCCAGTCCCTACTTATTGT -olivar-ref 22049 22078 olivar-ref_109_RIGHT 1 - AGAGACATATTCAAAAGTGCAATTATTCG -olivar-ref 22098 22127 olivar-ref_111_LEFT 1 + TGAAGGAAAACAGGGTAATTTCAAAAATC -olivar-ref 22264 22291 olivar-ref_110_RIGHT 2 - AGCAAGTAAAGTTTGAAACCTAGTGAT -olivar-ref 22345 22369 olivar-ref_112_LEFT 2 + GCTGCAGCTTATTATGTGGGTTAT -olivar-ref 22439 22463 olivar-ref_111_RIGHT 1 - ACTTTGTTTCTGAGAGAGGGTCAA -olivar-ref 22482 22514 olivar-ref_113_LEFT 1 + TGTAGAAAAAGGAATCTATCAAACTTCTAACT -olivar-ref 22689 22717 olivar-ref_112_RIGHT 2 - AGTAGGAGACACTCCATAACACTTAAAA -olivar-ref 22733 22763 olivar-ref_114_LEFT 2 + GCTTTACTAATGTCTATGCAGATTCATTTG -olivar-ref 22830 22858 olivar-ref_113_RIGHT 1 - GCAGCCTGTAAAATCATCTGGTAATTTA -olivar-ref 22948 22978 olivar-ref_115_LEFT 1 + CCTTTTGAGAGAGATATTTCAACTGAAATC -olivar-ref 23099 23125 olivar-ref_114_RIGHT 2 - TGGTGCATGTAGAAGTTCAAAAGAAA -olivar-ref 23221 23248 olivar-ref_116_LEFT 2 + GAGTCTAACAAAAAGTTTCTGCCTTTC -olivar-ref 23304 23331 olivar-ref_115_RIGHT 1 - CATGGTGTAATGTCAAGAATCTCAAGT -olivar-ref 23416 23439 olivar-ref_117_LEFT 1 + GAAGTCCCTGTTGCTATTCATGC -olivar-ref 23560 23581 olivar-ref_116_RIGHT 2 - ACTAGCGCATATACCTGCACC -olivar-ref 23698 23728 olivar-ref_118_LEFT 2 + GCCATACCCACAAATTTTACTATTAGTGTT -olivar-ref 23746 23772 olivar-ref_117_RIGHT 1 - TCTACTGATGTCTTGGTCATAGACAC -olivar-ref 23804 23830 olivar-ref_119_LEFT 1 + AATGCAGCAATCTTTTGTTGCAATAT -olivar-ref 23988 24013 olivar-ref_118_RIGHT 2 - AAATGACCTCTTGCTTGGTTTTGAT -olivar-ref 24032 24054 olivar-ref_120_LEFT 2 + ACAAAGTGACACTTGCAGATGC -olivar-ref 24076 24099 olivar-ref_119_RIGHT 1 - GCAGCAATATCACCAAGGCAATC -olivar-ref 24146 24170 olivar-ref_121_LEFT 1 + CACCTTTGCTCACAGATGAAATGA -olivar-ref 24262 24291 olivar-ref_120_RIGHT 2 - CCAATACCATTAAACCTATAAGCCATTTG -olivar-ref 24317 24347 olivar-ref_122_LEFT 2 + ACCAAAAATTGATTGCCAACCAATTTAATA -olivar-ref 24360 24386 olivar-ref_121_RIGHT 1 - CTGTGGAAGAAAGTGAGTCTTGAATT -olivar-ref 24571 24598 olivar-ref_123_LEFT 1 + TTGCAGACATATGTGACTCAACAATTA -olivar-ref 24619 24642 olivar-ref_122_RIGHT 2 - GTAGCAGCAAGATTAGCAGAAGC -olivar-ref 24723 24744 olivar-ref_124_LEFT 2 + GTCAGCACCTCATGGTGTAGT -olivar-ref 24814 24836 olivar-ref_123_RIGHT 1 - CACGAGGAAAGTGTGCTTTTCC -olivar-ref 24895 24923 olivar-ref_125_LEFT 1 + CCACAAATCATTACTACAGACAACACAT -olivar-ref 24949 24978 olivar-ref_124_RIGHT 2 - TCATAAACTGTGTTGTTGACAATTCCTAT -olivar-ref 25156 25183 olivar-ref_126_LEFT 2 + GATCTCCAAGAACTTGGAAAGTATGAG -olivar-ref 25230 25255 olivar-ref_125_RIGHT 1 - TGTCACCATTACTATGGCAATCAAG -olivar-ref 25288 25310 olivar-ref_127_LEFT 1 + TGTCTCAAGGGCTGTTGTTCTT -olivar-ref 25511 25533 olivar-ref_126_RIGHT 2 - AATAAGCCATCCGAAAGGGAGT -olivar-ref 25601 25622 olivar-ref_128_LEFT 2 + ACTAGCACTCTCCAAGGGTGT -olivar-ref 25650 25678 olivar-ref_127_RIGHT 1 - GCAAAAGGTGTGAGTAAACTGTTACAAA -olivar-ref 25780 25800 olivar-ref_129_LEFT 1 + GCTGGAAATGCCGTTCCAAA -olivar-ref 25919 25946 olivar-ref_128_RIGHT 2 - TGGTAGTCATGTTCAGAAATAGGACTT -olivar-ref 25977 26005 olivar-ref_130_LEFT 2 + GGAGTAAAAGACTGTGTTGTATTACACA -olivar-ref 26018 26044 olivar-ref_129_RIGHT 1 - GAGTTGAGTACAGCTGGTAATAGTCT -olivar-ref 26236 26262 olivar-ref_131_LEFT 1 + ACGAACTTATGTACTCATTCGTTTCG -olivar-ref 26351 26372 olivar-ref_130_RIGHT 2 - CAGTACGCACACAATCGAAGC -olivar-ref 26419 26449 olivar-ref_132_LEFT 2 + ACTCTCGTGTTAAAAATCTGAATTCTTCTA -olivar-ref 26589 26620 olivar-ref_131_RIGHT 1 - CAAATCCATGTAAGGAATAGGAAACCTATTA -olivar-ref 26723 26751 olivar-ref_133_LEFT 1 + GCTGCTGTTTACAGAATAAATTGGATCA -olivar-ref 26795 26816 olivar-ref_132_RIGHT 2 - AGCAATGAAGTAGCTGAGCCA -olivar-ref 26884 26901 olivar-ref_134_LEFT 2 + CGTGCCACTCCATGGCA -olivar-ref 26932 26954 olivar-ref_133_RIGHT 1 - GATCACAGCTCCGATTACGAGT -olivar-ref 27063 27079 olivar-ref_135_LEFT 1 + TGGGAGCTTCGCAGCG -olivar-ref 27099 27120 olivar-ref_134_RIGHT 2 - TGTAGCGACTGTATGCAGCAA -olivar-ref 27164 27192 olivar-ref_136_LEFT 2 + GACAATATTGCTTTGCTTGTACAGTAAG -olivar-ref 27410 27431 olivar-ref_135_RIGHT 1 - GCGAGTGTTATCAGTGCCAAG -olivar-ref 27458 27488 olivar-ref_137_LEFT 1 + GTGTGTTAGAGGTACAACAGTACTTTTAAA -olivar-ref 27517 27542 olivar-ref_136_RIGHT 2 - GCTAGAGGATGAAATGGTGAATTGC -olivar-ref 27695 27721 olivar-ref_138_LEFT 2 + TCTTATTGTTGCGGCAATAGTGTTTA -olivar-ref 27756 27789 olivar-ref_137_RIGHT 1 - ACAAATAGAAGTCAATTAATGAAAGTTCAATCA -olivar-ref 27841 27869 olivar-ref_139_LEFT 1 + GTTCTCACTTGAACTGCAAGATCATAAT -olivar-ref 27939 27967 olivar-ref_138_RIGHT 2 - CATGACTGTAAACTACATTCTTGGTGAA -olivar-ref 28111 28141 olivar-ref_140_LEFT 2 + CATCGATATCGGTAATTATACAGTTTCCTG -olivar-ref 28199 28230 olivar-ref_139_RIGHT 1 - CATGATACTCTAAAAAGTCTTCATAGAACGA -olivar-ref 28382 28400 olivar-ref_141_LEFT 1 + CAAAACAACGTCGGCCCC -olivar-ref 28482 28506 olivar-ref_140_RIGHT 2 - CTATTGGTGTTAATTGGAACGCCT -olivar-ref 28551 28572 olivar-ref_142_LEFT 2 + AATTCGTGGTGGTGACGGTAA -olivar-ref 28651 28674 olivar-ref_141_RIGHT 1 - GCAACCCATATGATGCCGTCTTT -olivar-ref 28734 28755 olivar-ref_143_LEFT 1 + TGCTGCAATCGTGCTACAACT -olivar-ref 28833 28855 olivar-ref_142_RIGHT 2 - TGAACTGTTGCGACTACGTGAT -olivar-ref 28967 28990 olivar-ref_144_LEFT 2 + GCAAAATGTCTGGTAAAGGCCAA -olivar-ref 29070 29096 olivar-ref_143_RIGHT 1 - CGAAAGCTTGTGTTACATTGTATGCT -olivar-ref 29160 29182 olivar-ref_145_LEFT 1 + TGATTACAAACATTGGCCGCAA -olivar-ref 29216 29235 olivar-ref_144_RIGHT 2 - CCAATGCGCGACATTCCGA -olivar-ref 29412 29432 olivar-ref_146_LEFT 2 + AGCCTTACCGCAGAGACAGA -olivar-ref 29451 29474 olivar-ref_145_RIGHT 1 - CCAAATCTGCAGCAGGAAGAAGA -olivar-ref 29774 29797 olivar-ref_146_RIGHT 2 - TTCCATATAGGCAGCTCTCCCTA diff --git a/example_output/olivar-design_SADDLE_Loss.html b/example_output/olivar-design_SADDLE_Loss.html deleted file mode 100644 index 6ca81c3..0000000 --- a/example_output/olivar-design_SADDLE_Loss.html +++ /dev/null @@ -1,14 +0,0 @@ - - - -
-
- - \ No newline at end of file diff --git a/example_output/olivar-ref.fasta b/example_output/olivar-ref.fasta deleted file mode 100644 index a3087ea..0000000 --- a/example_output/olivar-ref.fasta +++ /dev/null @@ -1,500 +0,0 @@ ->hCoV-19/Wuhan/WIV04/2019|EPI_ISL_402124|2019-12-30 -ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT -GTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACT -CACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC -TTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTT -CGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAAC -ACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGG -AGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATGGCACTTGTGG -CTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAA -ACGTTCGGATGCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGGTAGCAGAACT -CGAAGGCATTCAGTACGGTCGTAGTGGTGAGACACTTGGTGTCCTTGTCCCTCATGTGGG -CGAAATACCAGTGGCTTACCGCAAGGTTCTTCTTCGTAAGAACGGTAATAAAGGAGCTGG -TGGCCATAGTTACGGCGCCGATCTAAAGTCATTTGACTTAGGCGACGAGCTTGGCACTGA -TCCTTATGAAGATTTTCAAGAAAACTGGAACACTAAACATAGCAGTGGTGTTACCCGTGA -ACTCATGCGTGAGCTTAACGGAGGGGCATACACTCGCTATGTCGATAACAACTTCTGTGG -CCCTGATGGCTACCCTCTTGAGTGCATTAAAGACCTTCTAGCACGTGCTGGTAAAGCTTC -ATGCACTTTGTCCGAACAACTGGACTTTATTGACACTAAGAGGGGTGTATACTGCTGCCG -TGAACATGAGCATGAAATTGCTTGGTACACGGAACGTTCTGAAAAGAGCTATGAATTGCA -GACACCTTTTGAAATTAAATTGGCAAAGAAATTTGACACCTTCAATGGGGAATGTCCAAA -TTTTGTATTTCCCTTAAATTCCATAATCAAGACTATTCAACCAAGGGTTGAAAAGAAAAA -GCTTGATGGCTTTATGGGTAGAATTCGATCTGTCTATCCAGTTGCGTCACCAAATGAATG -CAACCAAATGTGCCTTTCAACTCTCATGAAGTGTGATCATTGTGGTGAAACTTCATGGCA -GACGGGCGATTTTGTTAAAGCCACTTGCGAATTTTGTGGCACTGAGAATTTGACTAAAGA -AGGTGCCACTACTTGTGGTTACTTACCCCAAAATGCTGTTGTTAAAATTTATTGTCCAGC -ATGTCACAATTCAGAAGTAGGACCTGAGCATAGTCTTGCCGAATACCATAATGAATCTGG -CTTGAAAACCATTCTTCGTAAGGGTGGTCGCACTATTGCCTTTGGAGGCTGTGTGTTCTC -TTATGTTGGTTGCCATAACAAGTGTGCCTATTGGGTTCCACGTGCTAGCGCTAACATAGG -TTGTAACCATACAGGTGTTGTTGGAGAAGGTTCCGAAGGTCTTAATGACAACCTTCTTGA -AATACTCCAAAAAGAGAAAGTCAACATCAATATTGTTGGTGACTTTAAACTTAATGAAGA -GATCGCCATTATTTTGGCATCTTTTTCTGCTTCCACAAGTGCTTTTGTGGAAACTGTGAA -AGGTTTGGATTATAAAGCATTCAAACAAATTGTTGAATCCTGTGGTAATTTTAAAGTTAC -AAAAGGAAAAGCTAAAAAAGGTGCCTGGAATATTGGTGAACAGAAATCAATACTGAGTCC -TCTTTATGCATTTGCATCAGAGGCTGCTCGTGTTGTACGATCAATTTTCTCCCGCACTCT -TGAAACTGCTCAAAATTCTGTGCGTGTTTTACAGAAGGCCGCTATAACAATACTAGATGG -AATTTCACAGTATTCACTGAGACTCATTGATGCTATGATGTTCACATCTGATTTGGCTAC -TAACAATCTAGTTGTAATGGCCTACATTACAGGTGGTGTTGTTCAGTTGACTTCGCAGTG -GCTAACTAACATCTTTGGCACTGTTTATGAAAAACTCAAACCCGTCCTTGATTGGCTTGA -AGAGAAGTTTAAGGAAGGTGTAGAGTTTCTTAGAGACGGTTGGGAAATTGTTAAATTTAT -CTCAACCTGTGCTTGTGAAATTGTCGGTGGACAAATTGTCACCTGTGCAAAGGAAATTAA -GGAGAGTGTTCAGACATTCTTTAAGCTTGTAAATAAATTTTTGGCTTTGTGTGCTGACTC -TATCATTATTGGTGGAGCTAAACTTAAAGCCTTGAATTTAGGTGAAACATTTGTCACGCA -CTCAAAGGGATTGTACAGAAAGTGTGTTAAATCCAGAGAAGAAACTGGCCTACTCATGCC -TCTAAAAGCCCCAAAAGAAATTATCTTCTTAGAGGGAGAAACACTTCCCACAGAAGTGTT -AACAGAGGAAGTTGTCTTGAAAACTGGTGATTTACAACCATTAGAACAACCTACTAGTGA -AGCTGTTGAAGCTCCATTGGTTGGTACACCAGTTTGTATTAACGGGCTTATGTTGCTCGA -AATCAAAGACACAGAAAAGTACTGTGCCCTTGCACCTAATATGATGGTAACAAACAATAC -CTTCACACTCAAAGGCGGTGCACCAACAAAGGTTACTTTTGGTGATGACACTGTGATAGA -AGTGCAAGGTTACAAGAGTGTGAATATCACTTTTGAACTTGATGAAAGGATTGATAAAGT -ACTTAATGAGAAGTGCTCTGCCTATACAGTTGAACTCGGTACAGAAGTAAATGAGTTCGC -CTGTGTTGTGGCAGATGCTGTCATAAAAACTTTGCAACCAGTATCTGAATTACTTACACC -ACTGGGCATTGATTTAGATGAGTGGAGTATGGCTACATACTACTTATTTGATGAGTCTGG -TGAGTTTAAATTGGCTTCACATATGTATTGTTCTTTCTACCCTCCAGATGAGGATGAAGA -AGAAGGTGATTGTGAAGAAGAAGAGTTTGAGCCATCAACTCAATATGAGTATGGTACTGA -AGATGATTACCAAGGTAAACCTTTGGAATTTGGTGCCACTTCTGCTGCTCTTCAACCTGA -AGAAGAGCAAGAAGAAGATTGGTTAGATGATGATAGTCAACAAACTGTTGGTCAACAAGA -CGGCAGTGAGGACAATCAGACAACTACTATTCAAACAATTGTTGAGGTTCAACCTCAATT -AGAGATGGAACTTACACCAGTTGTTCAGACTATTGAAGTGAATAGTTTTAGTGGTTATTT -AAAACTTACTGACAATGTATACATTAAAAATGCAGACATTGTGGAAGAAGCTAAAAAGGT -AAAACCAACAGTGGTTGTTAATGCAGCCAATGTTTACCTTAAACATGGAGGAGGTGTTGC -AGGAGCCTTAAATAAGGCTACTAACAATGCCATGCAAGTTGAATCTGATGATTACATAGC -TACTAATGGACCACTTAAAGTGGGTGGTAGTTGTGTTTTAAGCGGACACAATCTTGCTAA -ACACTGTCTTCATGTTGTCGGCCCAAATGTTAACAAAGGTGAAGACATTCAACTTCTTAA -GAGTGCTTATGAAAATTTTAATCAGCACGAAGTTCTACTTGCACCATTATTATCAGCTGG -TATTTTTGGTGCTGACCCTATACATTCTTTAAGAGTTTGTGTAGATACTGTTCGCACAAA -TGTCTACTTAGCTGTCTTTGATAAAAATCTCTATGACAAACTTGTTTCAAGCTTTTTGGA -AATGAAGAGTGAAAAGCAAGTTGAACAAAAGATCGCTGAGATTCCTAAAGAGGAAGTTAA -GCCATTTATAACTGAAAGTAAACCTTCAGTTGAACAGAGAAAACAAGATGATAAGAAAAT -CAAAGCTTGTGTTGAAGAAGTTACAACAACTCTGGAAGAAACTAAGTTCCTCACAGAAAA -CTTGTTACTTTATATTGACATTAATGGCAATCTTCATCCAGATTCTGCCACTCTTGTTAG -TGACATTGACATCACTTTCTTAAAGAAAGATGCTCCATATATAGTGGGTGATGTTGTTCA -AGAGGGTGTTTTAACTGCTGTGGTTATACCTACTAAAAAGGCTGGTGGCACTACTGAAAT -GCTAGCGAAAGCTTTGAGAAAAGTGCCAACAGACAATTATATAACCACTTACCCGGGTCA -GGGTTTAAATGGTTACACTGTAGAGGAGGCAAAGACAGTGCTTAAAAAGTGTAAAAGTGC -CTTTTACATTCTACCATCTATTATCTCTAATGAGAAGCAAGAAATTCTTGGAACTGTTTC -TTGGAATTTGCGAGAAATGCTTGCACATGCAGAAGAAACACGCAAATTAATGCCTGTCTG -TGTGGAAACTAAAGCCATAGTTTCAACTATACAGCGTAAATATAAGGGTATTAAAATACA -AGAGGGTGTGGTTGATTATGGTGCTAGATTTTACTTTTACACCAGTAAAACAACTGTAGC -GTCACTTATCAACACACTTAACGATCTAAATGAAACTCTTGTTACAATGCCACTTGGCTA -TGTAACACATGGCTTAAATTTGGAAGAAGCTGCTCGGTATATGAGATCTCTCAAAGTGCC -AGCTACAGTTTCTGTTTCTTCACCTGATGCTGTTACAGCGTATAATGGTTATCTTACTTC -TTCTTCTAAAACACCTGAAGAACATTTTATTGAAACCATCTCACTTGCTGGTTCCTATAA -AGATTGGTCCTATTCTGGACAATCTACACAACTAGGTATAGAATTTCTTAAGAGAGGTGA -TAAAAGTGTATATTACACTAGTAATCCTACCACATTCCACCTAGATGGTGAAGTTATCAC -CTTTGACAATCTTAAGACACTTCTTTCTTTGAGAGAAGTGAGGACTATTAAGGTGTTTAC -AACAGTAGACAACATTAACCTCCACACGCAAGTTGTGGACATGTCAATGACATATGGACA -ACAGTTTGGTCCAACTTATTTGGATGGAGCTGATGTTACTAAAATAAAACCTCATAATTC -ACATGAAGGTAAAACATTTTATGTTTTACCTAATGATGACACTCTACGTGTTGAGGCTTT -TGAGTACTACCACACAACTGATCCTAGTTTTCTGGGTAGGTACATGTCAGCATTAAATCA -CACTAAAAAGTGGAAATACCCACAAGTTAATGGTTTAACTTCTATTAAATGGGCAGATAA -CAACTGTTATCTTGCCACTGCATTGTTAACACTCCAACAAATAGAGTTGAAGTTTAATCC -ACCTGCTCTACAAGATGCTTATTACAGAGCAAGGGCTGGTGAAGCTGCTAACTTTTGTGC -ACTTATCTTAGCCTACTGTAATAAGACAGTAGGTGAGTTAGGTGATGTTAGAGAAACAAT -GAGTTACTTGTTTCAACATGCCAATTTAGATTCTTGCAAAAGAGTCTTGAACGTGGTGTG -TAAAACTTGTGGACAACAGCAGACAACCCTTAAGGGTGTAGAAGCTGTTATGTACATGGG -CACACTTTCTTATGAACAATTTAAGAAAGGTGTTCAGATACCTTGTACGTGTGGTAAACA -AGCTACAAAATATCTAGTACAACAGGAGTCACCTTTTGTTATGATGTCAGCACCACCTGC -TCAGTATGAACTTAAGCATGGTACATTTACTTGTGCTAGTGAGTACACTGGTAATTACCA -GTGTGGTCACTATAAACATATAACTTCTAAAGAAACTTTGTATTGCATAGACGGTGCTTT -ACTTACAAAGTCCTCAGAATACAAAGGTCCTATTACGGATGTTTTCTACAAAGAAAACAG -TTACACAACAACCATAAAACCAGTTACTTATAAATTGGATGGTGTTGTTTGTACAGAAAT -TGACCCTAAGTTGGACAATTATTATAAGAAAGACAATTCTTATTTCACAGAGCAACCAAT -TGATCTTGTACCAAACCAACCATATCCAAACGCAAGCTTCGATAATTTTAAGTTTGTATG -TGATAATATCAAATTTGCTGATGATTTAAACCAGTTAACTGGTTATAAGAAACCTGCTTC -AAGAGAGCTTAAAGTTACATTTTTCCCTGACTTAAATGGTGATGTGGTGGCTATTGATTA -TAAACACTACACACCCTCTTTTAAGAAAGGAGCTAAATTGTTACATAAACCTATTGTTTG -GCATGTTAACAATGCAACTAATAAAGCCACGTATAAACCAAATACCTGGTGTATACGTTG -TCTTTGGAGCACAAAACCAGTTGAAACATCAAATTCGTTTGATGTACTGAAGTCAGAGGA -CGCGCAGGGAATGGATAATCTTGCCTGCGAAGATCTAAAACCAGTCTCTGAAGAAGTAGT -GGAAAATCCTACCATACAGAAAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGT -AGGAGACATTATACTTAAACCAGCAAATAATAGTTTAAAAATTACAGAAGAGGTTGGCCA -CACAGATCTAATGGCTGCTTATGTAGACAATTCTAGTCTTACTATTAAGAAACCTAATGA -ATTATCTAGAGTATTAGGTTTGAAAACCCTTGCTACTCATGGTTTAGCTGCTGTTAATAG -TGTCCCTTGGGATACTATAGCTAATTATGCTAAGCCTTTTCTTAACAAAGTTGTTAGTAC -AACTACTAACATAGTTACACGGTGTTTAAACCGTGTTTGTACTAATTATATGCCTTATTT -CTTTACTTTATTGCTACAATTGTGTACTTTTACTAGAAGTACAAATTCTAGAATTAAAGC -ATCTATGCCGACTACTATAGCAAAGAATACTGTTAAGAGTGTCGGTAAATTTTGTCTAGA -GGCTTCATTTAATTATTTGAAGTCACCTAATTTTTCTAAACTGATAAATATTATAATTTG -GTTTTTACTATTAAGTGTTTGCCTAGGTTCTTTAATCTACTCAACCGCTGCTTTAGGTGT -TTTAATGTCTAATTTAGGCATGCCTTCTTACTGTACTGGTTACAGAGAAGGCTATTTGAA -CTCTACTAATGTCACTATTGCAACCTACTGTACTGGTTCTATACCTTGTAGTGTTTGTCT -TAGTGGTTTAGATTCTTTAGACACCTATCCTTCTTTAGAAACTATACAAATTACCATTTC -ATCTTTTAAATGGGATTTAACTGCTTTTGGCTTAGTTGCAGAGTGGTTTTTGGCATATAT -TCTTTTCACTAGGTTTTTCTATGTACTTGGATTGGCTGCAATCATGCAATTGTTTTTCAG -CTATTTTGCAGTACATTTTATTAGTAATTCTTGGCTTATGTGGTTAATAATTAATCTTGT -ACAAATGGCCCCGATTTCAGCTATGGTTAGAATGTACATCTTCTTTGCATCATTTTATTA -TGTATGGAAAAGTTATGTGCATGTTGTAGACGGTTGTAATTCATCAACTTGTATGATGTG -TTACAAACGTAATAGAGCAACAAGAGTCGAATGTACAACTATTGTTAATGGTGTTAGAAG -GTCCTTTTATGTCTATGCTAATGGAGGTAAAGGCTTTTGCAAACTACACAATTGGAATTG -TGTTAATTGTGATACATTCTGTGCTGGTAGTACATTTATTAGTGATGAAGTTGCGAGAGA -CTTGTCACTACAGTTTAAAAGACCAATAAATCCTACTGACCAGTCTTCTTACATCGTTGA -TAGTGTTACAGTGAAGAATGGTTCCATCCATCTTTACTTTGATAAAGCTGGTCAAAAGAC -TTATGAAAGACATTCTCTCTCTCATTTTGTTAACTTAGACAACCTGAGAGCTAATAACAC -TAAAGGTTCATTGCCTATTAATGTTATAGTTTTTGATGGTAAATCAAAATGTGAAGAATC -ATCTGCAAAATCAGCGTCTGTTTACTACAGTCAGCTTATGTGTCAACCTATACTGTTACT -AGATCAGGCATTAGTGTCTGATGTTGGTGATAGTGCGGAAGTTGCAGTTAAAATGTTTGA -TGCTTACGTTAATACGTTTTCATCAACTTTTAACGTACCAATGGAAAAACTCAAAACACT -AGTTGCAACTGCAGAAGCTGAACTTGCAAAGAATGTGTCCTTAGACAATGTCTTATCTAC -TTTTATTTCAGCAGCTCGGCAAGGGTTTGTTGATTCAGATGTAGAAACTAAAGATGTTGT -TGAATGTCTTAAATTGTCACATCAATCTGACATAGAAGTTACTGGCGATAGTTGTAATAA -CTATATGCTCACCTATAACAAAGTTGAAAACATGACACCCCGTGACCTTGGTGCTTGTAT -TGACTGTAGTGCGCGTCATATTAATGCGCAGGTAGCAAAAAGTCACAACATTGCTTTGAT -ATGGAACGTTAAAGATTTCATGTCATTGTCTGAACAACTACGAAAACAAATACGTAGTGC -TGCTAAAAAGAATAACTTACCTTTTAAGTTGACATGTGCAACTACTAGACAAGTTGTTAA -TGTTGTAACAACAAAGATAGCACTTAAGGGTGGTAAAATTGTTAATAATTGGTTGAAGCA -GTTAATTAAAGTTACACTTGTGTTCCTTTTTGTTGCTGCTATTTTCTATTTAATAACACC -TGTTCATGTCATGTCTAAACATACTGACTTTTCAAGTGAAATCATAGGATACAAGGCTAT -TGATGGTGGTGTCACTCGTGACATAGCATCTACAGATACTTGTTTTGCTAACAAACATGC -TGATTTTGACACATGGTTTAGCCAGCGTGGTGGTAGTTATACTAATGACAAAGCTTGCCC -ATTGATTGCTGCAGTCATAACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCAC -GATATTACGCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCAGT -TGGTAACATCTGTTACACACCATCAAAACTTATAGAGTACACTGACTTTGCAACATCAGC -TTGTGTTTTGGCTGCTGAATGTACAATTTTTAAAGATGCTTCTGGTAAGCCAGTACCATA -TTGTTATGATACCAATGTACTAGAAGGTTCTGTTGCTTATGAAAGTTTACGCCCTGACAC -ACGTTATGTGCTCATGGATGGCTCTATTATTCAATTTCCTAACACCTACCTTGAAGGTTC -TGTTAGAGTGGTAACAACTTTTGATTCTGAGTACTGTAGGCACGGCACTTGTGAAAGATC -AGAAGCTGGTGTTTGTGTATCTACTAGTGGTAGATGGGTACTTAACAATGATTATTACAG -ATCTTTACCAGGAGTTTTCTGTGGTGTAGATGCTGTAAATTTACTTACTAATATGTTTAC -ACCACTAATTCAACCTATTGGTGCTTTGGACATATCAGCATCTATAGTAGCTGGTGGTAT -TGTAGCTATCGTAGTAACATGCCTTGCCTACTATTTTATGAGGTTTAGAAGAGCTTTTGG -TGAATACAGTCATGTAGTTGCCTTTAATACTTTACTATTCCTTATGTCATTCACTGTACT -CTGTTTAACACCAGTTTACTCATTCTTACCTGGTGTTTATTCTGTTATTTACTTGTACTT -GACATTTTATCTTACTAATGATGTTTCTTTTTTAGCACATATTCAGTGGATGGTTATGTT -CACACCTTTAGTACCTTTCTGGATAACAATTGCTTATATCATTTGTATTTCCACAAAGCA -TTTCTATTGGTTCTTTAGTAATTACCTAAAGAGACGTGTAGTCTTTAATGGTGTTTCCTT -TAGTACTTTTGAAGAAGCTGCGCTGTGCACCTTTTTGTTAAATAAAGAAATGTATCTAAA -GTTGCGTAGTGATGTGCTATTACCTCTTACGCAATATAATAGATACTTAGCTCTTTATAA -TAAGTACAAGTATTTTAGTGGAGCAATGGATACAACTAGCTACAGAGAAGCTGCTTGTTG -TCATCTCGCAAAGGCTCTCAATGACTTCAGTAACTCAGGTTCTGATGTTCTTTACCAACC -ACCACAAACCTCTATCACCTCAGCTGTTTTGCAGAGTGGTTTTAGAAAAATGGCATTCCC -ATCTGGTAAAGTTGAGGGTTGTATGGTACAAGTAACTTGTGGTACAACTACACTTAACGG -TCTTTGGCTTGATGACGTAGTTTACTGTCCAAGACATGTGATCTGCACCTCTGAAGACAT -GCTTAACCCTAATTATGAAGATTTACTCATTCGTAAGTCTAATCATAATTTCTTGGTACA -GGCTGGTAATGTTCAACTCAGGGTTATTGGACATTCTATGCAAAATTGTGTACTTAAGCT -TAAGGTTGATACAGCCAATCCTAAGACACCTAAGTATAAGTTTGTTCGCATTCAACCAGG -ACAGACTTTTTCAGTGTTAGCTTGTTACAATGGTTCACCATCTGGTGTTTACCAATGTGC -TATGAGGCCCAATTTCACTATTAAGGGTTCATTCCTTAATGGTTCATGTGGTAGTGTTGG -TTTTAACATAGATTATGACTGTGTCTCTTTTTGTTACATGCACCATATGGAATTACCAAC -TGGAGTTCATGCTGGCACAGACTTAGAAGGTAACTTTTATGGACCTTTTGTTGACAGGCA -AACAGCACAAGCAGCTGGTACGGACACAACTATTACAGTTAATGTTTTAGCTTGGTTGTA -CGCTGCTGTTATAAATGGAGACAGGTGGTTTCTCAATCGATTTACCACAACTCTTAATGA -CTTTAACCTTGTGGCTATGAAGTACAATTATGAACCTCTAACACAAGACCATGTTGACAT -ACTAGGACCTCTTTCTGCTCAAACTGGAATTGCCGTTTTAGATATGTGTGCTTCATTAAA -AGAATTACTGCAAAATGGTATGAATGGACGTACCATATTGGGTAGTGCTTTATTAGAAGA -TGAATTTACACCTTTTGATGTTGTTAGACAATGCTCAGGTGTTACTTTCCAAAGTGCAGT -GAAAAGAACAATCAAGGGTACACACCACTGGTTGTTACTCACAATTTTGACTTCACTTTT -AGTTTTAGTCCAGAGTACTCAATGGTCTTTGTTCTTTTTTTTGTATGAAAATGCCTTTTT -ACCTTTTGCTATGGGTATTATTGCTATGTCTGCTTTTGCAATGATGTTTGTCAAACATAA -GCATGCATTTCTCTGTTTGTTTTTGTTACCTTCTCTTGCCACTGTAGCTTATTTTAATAT -GGTCTATATGCCTGCTAGTTGGGTGATGCGTATTATGACATGGTTGGATATGGTTGATAC -TAGTTTGTCTGGTTTTAAGCTAAAAGACTGTGTTATGTATGCATCAGCTGTAGTGTTACT -AATCCTTATGACAGCAAGAACTGTGTATGATGATGGTGCTAGGAGAGTGTGGACACTTAT -GAATGTCTTGACACTCGTTTATAAAGTTTATTATGGTAATGCTTTAGATCAAGCCATTTC -CATGTGGGCTCTTATAATCTCTGTTACTTCTAACTACTCAGGTGTAGTTACAACTGTCAT -GTTTTTGGCCAGAGGTATTGTTTTTATGTGTGTTGAGTATTGCCCTATTTTCTTCATAAC -TGGTAATACACTTCAGTGTATAATGCTAGTTTATTGTTTCTTAGGCTATTTTTGTACTTG -TTACTTTGGCCTCTTTTGTTTACTCAACCGCTACTTTAGACTGACTCTTGGTGTTTATGA -TTACTTAGTTTCTACACAGGAGTTTAGATATATGAATTCACAGGGACTACTCCCACCCAA -GAATAGCATAGATGCCTTCAAACTCAACATTAAATTGTTGGGTGTTGGTGGCAAACCTTG -TATCAAAGTAGCCACTGTACAGTCTAAAATGTCAGATGTAAAGTGCACATCAGTAGTCTT -ACTCTCAGTTTTGCAACAACTCAGAGTAGAATCATCATCTAAATTGTGGGCTCAATGTGT -CCAGTTACACAATGACATTCTCTTAGCTAAAGATACTACTGAAGCCTTTGAAAAAATGGT -TTCACTACTTTCTGTTTTGCTTTCCATGCAGGGTGCTGTAGACATAAACAAGCTTTGTGA -AGAAATGCTGGACAACAGGGCAACCTTACAAGCTATAGCCTCAGAGTTTAGTTCCCTTCC -ATCATATGCAGCTTTTGCTACTGCTCAAGAAGCTTATGAGCAGGCTGTTGCTAATGGTGA -TTCTGAAGTTGTTCTTAAAAAGTTGAAGAAGTCTTTGAATGTGGCTAAATCTGAATTTGA -CCGTGATGCAGCCATGCAACGTAAGTTGGAAAAGATGGCTGATCAAGCTATGACCCAAAT -GTATAAACAGGCTAGATCTGAGGACAAGAGGGCAAAAGTTACTAGTGCTATGCAGACAAT -GCTTTTCACTATGCTTAGAAAGTTGGATAATGATGCACTCAACAACATTATCAACAATGC -AAGAGATGGTTGTGTTCCCTTGAACATAATACCTCTTACAACAGCAGCCAAACTAATGGT -TGTCATACCAGACTATAACACATATAAAAATACGTGTGATGGTACAACATTTACTTATGC -ATCAGCATTGTGGGAAATCCAACAGGTTGTAGATGCAGATAGTAAAATTGTTCAACTTAG -TGAAATTAGTATGGACAATTCACCTAATTTAGCATGGCCTCTTATTGTAACAGCTTTAAG -GGCCAATTCTGCTGTCAAATTACAGAATAATGAGCTTAGTCCTGTTGCACTACGACAGAT -GTCTTGTGCTGCCGGTACTACACAAACTGCTTGCACTGATGACAATGCGTTAGCTTACTA -CAACACAACAAAGGGAGGTAGGTTTGTACTTGCACTGTTATCCGATTTACAGGATTTGAA -ATGGGCTAGATTCCCTAAGAGTGATGGAACTGGTACTATCTATACAGAACTGGAACCACC -TTGTAGGTTTGTTACAGACACACCTAAAGGTCCTAAAGTGAAGTATTTATACTTTATTAA -AGGATTAAACAACCTAAATAGAGGTATGGTACTTGGTAGTTTAGCTGCCACAGTACGTCT -ACAAGCTGGTAATGCAACAGAAGTGCCTGCCAATTCAACTGTATTATCTTTCTGTGCTTT -TGCTGTAGATGCTGCTAAAGCTTACAAAGATTATCTAGCTAGTGGGGGACAACCAATCAC -TAATTGTGTTAAGATGTTGTGTACACACACTGGTACTGGTCAGGCAATAACAGTTACACC -GGAAGCCAATATGGATCAAGAATCCTTTGGTGGTGCATCGTGTTGTCTGTACTGCCGTTG -CCACATAGATCATCCAAATCCTAAAGGATTTTGTGACTTAAAAGGTAAGTATGTACAAAT -ACCTACAACTTGTGCTAATGACCCTGTGGGTTTTACACTTAAAAACACAGTCTGTACCGT -CTGCGGTATGTGGAAAGGTTATGGCTGTAGTTGTGATCAACTCCGCGAACCCATGCTTCA -GTCAGCTGATGCACAATCGTTTTTAAACGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACA -CCGTGCGGCACAGGCACTAGTACTGATGTCGTATACAGGGCTTTTGACATCTACAATGAT -AAAGTAGCTGGTTTTGCTAAATTCCTAAAAACTAATTGTTGTCGCTTCCAAGAAAAGGAC -GAAGATGACAATTTAATTGATTCTTACTTTGTAGTTAAGAGACACACTTTCTCTAACTAC -CAACATGAAGAAACAATTTATAATTTACTTAAGGATTGTCCAGCTGTTGCTAAACATGAC -TTCTTTAAGTTTAGAATAGACGGTGACATGGTACCACATATATCACGTCAACGTCTTACT -AAATACACAATGGCAGACCTCGTCTATGCTTTAAGGCATTTTGATGAAGGTAATTGTGAC -ACATTAAAAGAAATACTTGTCACATACAATTGTTGTGATGATGATTATTTCAATAAAAAG -GACTGGTATGATTTTGTAGAAAACCCAGATATATTACGCGTATACGCCAACTTAGGTGAA -CGTGTACGCCAAGCTTTGTTAAAAACAGTACAATTCTGTGATGCCATGCGAAATGCTGGT -ATTGTTGGTGTACTGACATTAGATAATCAAGATCTCAATGGTAACTGGTATGATTTCGGT -GATTTCATACAAACCACGCCAGGTAGTGGAGTTCCTGTTGTAGATTCTTATTATTCATTG -TTAATGCCTATATTAACCTTGACCAGGGCTTTAACTGCAGAGTCACATGTTGACACTGAC -TTAACAAAGCCTTACATTAAGTGGGATTTGTTAAAATATGACTTCACGGAAGAGAGGTTA -AAACTCTTTGACCGTTATTTTAAATATTGGGATCAGACATACCACCCAAATTGTGTTAAC -TGTTTGGATGACAGATGCATTCTGCATTGTGCAAACTTTAATGTTTTATTCTCTACAGTG -TTCCCACCTACAAGTTTTGGACCACTAGTGAGAAAAATATTTGTTGATGGTGTTCCATTT -GTAGTTTCAACTGGATACCACTTCAGAGAGCTAGGTGTTGTACATAATCAGGATGTAAAC -TTACATAGCTCTAGACTTAGTTTTAAGGAATTACTTGTGTATGCTGCTGACCCTGCTATG -CACGCTGCTTCTGGTAATCTATTACTAGATAAACGCACTACGTGCTTTTCAGTAGCTGCA -CTTACTAACAATGTTGCTTTTCAAACTGTCAAACCCGGTAATTTTAACAAAGACTTCTAT -GACTTTGCTGTGTCTAAGGGTTTCTTTAAGGAAGGAAGTTCTGTTGAATTAAAACACTTC -TTCTTTGCTCAGGATGGTAATGCTGCTATCAGCGATTATGACTACTATCGTTATAATCTA -CCAACAATGTGTGATATCAGACAACTACTATTTGTAGTTGAAGTTGTTGATAAGTACTTT -GATTGTTACGATGGTGGCTGTATTAATGCTAACCAAGTCATCGTCAACAACCTAGACAAA -TCAGCTGGTTTTCCATTTAATAAATGGGGTAAGGCTAGACTTTATTATGATTCAATGAGT -TATGAGGATCAAGATGCACTTTTCGCATATACAAAACGTAATGTCATCCCTACTATAACT -CAAATGAATCTTAAGTATGCCATTAGTGCAAAGAATAGAGCTCGCACCGTAGCTGGTGTC -TCTATCTGTAGTACTATGACCAATAGACAGTTTCATCAAAAATTATTGAAATCAATAGCC -GCCACTAGAGGAGCTACTGTAGTAATTGGAACAAGCAAATTCTATGGTGGTTGGCACAAC -ATGTTAAAAACTGTTTATAGTGATGTAGAAAACCCTCACCTTATGGGTTGGGATTATCCT -AAATGTGATAGAGCCATGCCTAACATGCTTAGAATTATGGCCTCACTTGTTCTTGCTCGC -AAACATACAACGTGTTGTAGCTTGTCACACCGTTTCTATAGATTAGCTAATGAGTGTGCT -CAAGTATTGAGTGAAATGGTCATGTGTGGCGGTTCACTATATGTTAAACCAGGTGGAACC -TCATCAGGAGATGCCACAACTGCTTATGCTAATAGTGTTTTTAACATTTGTCAAGCTGTC -ACGGCCAATGTTAATGCACTTTTATCTACTGATGGTAACAAAATTGCCGATAAGTATGTC -CGCAATTTACAACACAGACTTTATGAGTGTCTCTATAGAAATAGAGATGTTGACACAGAC -TTTGTGAATGAGTTTTACGCATATTTGCGTAAACATTTCTCAATGATGATACTCTCTGAC -GATGCTGTTGTGTGTTTCAATAGCACTTATGCATCTCAAGGTCTAGTGGCTAGCATAAAG -AACTTTAAGTCAGTTCTTTATTATCAAAACAATGTTTTTATGTCTGAAGCAAAATGTTGG -ACTGAGACTGACCTTACTAAAGGACCTCATGAATTTTGCTCTCAACATACAATGCTAGTT -AAACAGGGTGATGATTATGTGTACCTTCCTTACCCAGATCCATCAAGAATCCTAGGGGCC -GGCTGTTTTGTAGATGATATCGTAAAAACAGATGGTACACTTATGATTGAACGGTTCGTG -TCTTTAGCTATAGATGCTTACCCACTTACTAAACATCCTAATCAGGAGTATGCTGATGTC -TTTCATTTGTACTTACAATACATAAGAAAGCTACATGATGAGTTAACAGGACACATGTTA -GACATGTATTCTGTTATGCTTACTAATGATAACACTTCAAGGTATTGGGAACCTGAGTTT -TATGAGGCTATGTACACACCGCATACAGTCTTACAGGCTGTTGGGGCTTGTGTTCTTTGC -AATTCACAGACTTCATTAAGATGTGGTGCTTGCATACGTAGACCATTCTTATGTTGTAAA -TGCTGTTACGACCATGTCATATCAACATCACATAAATTAGTCTTGTCTGTTAATCCGTAT -GTTTGCAATGCTCCAGGTTGTGATGTCACAGATGTGACTCAACTTTACTTAGGAGGTATG -AGCTATTATTGTAAATCACATAAACCACCCATTAGTTTTCCATTGTGTGCTAATGGACAA -GTTTTTGGTTTATATAAAAATACATGTGTTGGTAGCGATAATGTTACTGACTTTAATGCA -ATTGCAACATGTGACTGGACAAATGCTGGTGATTACATTTTAGCTAACACCTGTACTGAA -AGACTCAAGCTTTTTGCAGCAGAAACGCTCAAAGCTACTGAGGAGACATTTAAACTGTCT -TATGGTATTGCTACTGTACGTGAAGTGCTGTCTGACAGAGAATTACATCTTTCATGGGAA -GTTGGTAAACCTAGACCACCACTTAACCGAAATTATGTCTTTACTGGTTATCGTGTAACT -AAAAACAGTAAAGTACAAATAGGAGAGTACACCTTTGAAAAAGGTGACTATGGTGATGCT -GTTGTTTACCGAGGTACAACAACTTACAAATTAAATGTTGGTGATTATTTTGTGCTGACA -TCACATACAGTAATGCCATTAAGTGCACCTACACTAGTGCCACAAGAGCACTATGTTAGA -ATTACTGGCTTATACCCAACACTCAATATCTCAGATGAGTTTTCTAGCAATGTTGCAAAT -TATCAAAAGGTTGGTATGCAAAAGTATTCTACACTCCAGGGACCACCTGGTACTGGTAAG -AGTCATTTTGCTATTGGCCTAGCTCTCTACTACCCTTCTGCTCGCATAGTGTATACAGCT -TGCTCTCATGCCGCTGTTGATGCACTATGTGAGAAGGCATTAAAATATTTGCCTATAGAT -AAATGTAGTAGAATTATACCTGCACGTGCTCGTGTAGAGTGTTTTGATAAATTCAAAGTG -AATTCAACATTAGAACAGTATGTCTTTTGTACTGTAAATGCATTGCCTGAGACGACAGCA -GATATAGTTGTCTTTGATGAAATTTCAATGGCCACAAATTATGATTTGAGTGTTGTCAAT -GCCAGATTACGTGCTAAGCACTATGTGTACATTGGCGACCCTGCTCAATTACCTGCACCA -CGCACATTGCTAACTAAGGGCACACTAGAACCAGAATATTTCAATTCAGTGTGTAGACTT -ATGAAAACTATAGGTCCAGACATGTTCCTCGGAACTTGTCGGCGTTGTCCTGCTGAAATT -GTTGACACTGTGAGTGCTTTGGTTTATGATAATAAGCTTAAAGCACATAAAGACAAATCA -GCTCAATGCTTTAAAATGTTTTATAAGGGTGTTATCACGCATGATGTTTCATCTGCAATT -AACAGGCCACAAATAGGCGTGGTAAGAGAATTCCTTACACGTAACCCTGCTTGGAGAAAA -GCTGTCTTTATTTCACCTTATAATTCACAGAATGCTGTAGCCTCAAAGATTTTGGGACTA -CCAACTCAAACTGTTGATTCATCACAGGGCTCAGAATATGACTATGTCATATTCACTCAA -ACCACTGAAACAGCTCACTCTTGTAATGTAAACAGATTTAATGTTGCTATTACCAGAGCA -AAAGTAGGCATACTTTGCATAATGTCTGATAGAGACCTTTATGACAAGTTGCAATTTACA -AGTCTTGAAATTCCACGTAGGAATGTGGCAACTTTACAAGCTGAAAATGTAACAGGACTC -TTTAAAGATTGTAGTAAGGTAATCACTGGGTTACATCCTACACAGGCACCTACACACCTC -AGTGTTGACACTAAATTCAAAACTGAAGGTTTATGTGTTGACATACCTGGCATACCTAAG -GACATGACCTATAGAAGACTCATCTCTATGATGGGTTTTAAAATGAATTATCAAGTTAAT -GGTTACCCTAACATGTTTATCACCCGCGAAGAAGCTATAAGACATGTACGTGCATGGATT -GGCTTCGATGTCGAGGGGTGTCATGCTACTAGAGAAGCTGTTGGTACCAATTTACCTTTA -CAGCTAGGTTTTTCTACAGGTGTTAACCTAGTTGCTGTACCTACAGGTTATGTTGATACA -CCTAATAATACAGATTTTTCCAGAGTTAGTGCTAAACCACCGCCTGGAGATCAATTTAAA -CACCTCATACCACTTATGTACAAAGGACTTCCTTGGAATGTAGTGCGTATAAAGATTGTA -CAAATGTTAAGTGACACACTTAAAAATCTCTCTGACAGAGTCGTATTTGTCTTATGGGCA -CATGGCTTTGAGTTGACATCTATGAAGTATTTTGTGAAAATAGGACCTGAGCGCACCTGT -TGTCTATGTGATAGACGTGCCACATGCTTTTCCACTGCTTCAGACACTTATGCCTGTTGG -CATCATTCTATTGGATTTGATTACGTCTATAATCCGTTTATGATTGATGTTCAACAATGG -GGTTTTACAGGTAACCTACAAAGCAACCATGATCTGTATTGTCAAGTCCATGGTAATGCA -CATGTAGCTAGTTGTGATGCAATCATGACTAGGTGTCTAGCTGTCCACGAGTGCTTTGTT -AAGCGTGTTGACTGGACTATTGAATATCCTATAATTGGTGATGAACTGAAGATTAATGCG -GCTTGTAGAAAGGTTCAACACATGGTTGTTAAAGCTGCATTATTAGCAGACAAATTCCCA -GTTCTTCACGACATTGGTAACCCTAAAGCTATTAAGTGTGTACCTCAAGCTGATGTAGAA -TGGAAGTTCTATGATGCACAGCCTTGTAGTGACAAAGCTTATAAAATAGAAGAATTATTC -TATTCTTATGCCACACATTCTGACAAATTCACAGATGGTGTATGCCTATTTTGGAATTGC -AATGTCGATAGATATCCTGCTAATTCCATTGTTTGTAGATTTGACACTAGAGTGCTATCT -AACCTTAACTTGCCTGGTTGTGATGGTGGCAGTTTGTATGTAAATAAACATGCATTCCAC -ACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAACAATTACCATTTTTCTATTAC -TCTGACAGTCCATGTGAGTCTCATGGAAAACAAGTAGTGTCAGATATAGATTATGTACCA -CTAAAGTCTGCTACGTGTATAACACGTTGCAATTTAGGTGGTGCTGTCTGTAGACATCAT -GCTAATGAGTACAGATTGTATCTCGATGCTTATAACATGATGATCTCAGCTGGCTTTAGC -TTGTGGGTTTACAAACAATTTGATACTTATAACCTCTGGAACACTTTTACAAGACTTCAG -AGTTTAGAAAATGTGGCTTTTAATGTTGTAAATAAGGGACACTTTGATGGACAACAGGGT -GAAGTACCAGTTTCTATCATTAATAACACTGTTTACACAAAAGTTGATGGTGTTGATGTA -GAATTGTTTGAAAATAAAACAACATTACCTGTTAATGTAGCATTTGAGCTTTGGGCTAAG -CGCAACATTAAACCAGTACCAGAGGTGAAAATACTCAATAATTTGGGTGTGGACATTGCT -GCTAATACTGTGATCTGGGACTACAAAAGAGATGCTCCAGCACATATATCTACTATTGGT -GTTTGTTCTATGACTGACATAGCCAAGAAACCAACTGAAACGATTTGTGCACCACTCACT -GTCTTTTTTGATGGTAGAGTTGATGGTCAAGTAGACTTATTTAGAAATGCCCGTAATGGT -GTTCTTATTACAGAAGGTAGTGTTAAAGGTTTACAACCATCTGTAGGTCCCAAACAAGCT -AGTCTTAATGGAGTCACATTAATTGGAGAAGCCGTAAAAACACAGTTCAATTATTATAAG -AAAGTTGATGGTGTTGTCCAACAATTACCTGAAACTTACTTTACTCAGAGTAGAAATTTA -CAAGAATTTAAACCCAGGAGTCAAATGGAAATTGATTTCTTAGAATTAGCTATGGATGAA -TTCATTGAACGGTATAAATTAGAAGGCTATGCCTTCGAACATATCGTTTATGGAGATTTT -AGTCATAGTCAGTTAGGTGGTTTACATCTACTGATTGGACTAGCTAAACGTTTTAAGGAA -TCACCTTTTGAATTAGAAGATTTTATTCCTATGGACAGTACAGTTAAAAACTATTTCATA -ACAGATGCGCAAACAGGTTCATCTAAGTGTGTGTGTTCTGTTATTGATTTATTACTTGAT -GATTTTGTTGAAATAATAAAATCCCAAGATTTATCTGTAGTTTCTAAGGTTGTCAAAGTG -ACTATTGACTATACAGAAATTTCATTTATGCTTTGGTGTAAAGATGGCCATGTAGAAACA -TTTTACCCAAAATTACAATCTAGTCAAGCGTGGCAACCGGGTGTTGCTATGCCTAATCTT -TACAAAATGCAAAGAATGCTATTAGAAAAGTGTGACCTTCAAAATTATGGTGATAGTGCA -ACATTACCTAAAGGCATAATGATGAATGTCGCAAAATATACTCAACTGTGTCAATATTTA -AACACATTAACATTAGCTGTACCCTATAATATGAGAGTTATACATTTTGGTGCTGGTTCT -GATAAAGGAGTTGCACCAGGTACAGCTGTTTTAAGACAGTGGTTGCCTACGGGTACGCTG -CTTGTCGATTCAGATCTTAATGACTTTGTCTCTGATGCAGATTCAACTTTGATTGGTGAT -TGTGCAACTGTACATACAGCTAATAAATGGGATCTCATTATTAGTGATATGTACGACCCT -AAGACTAAAAATGTTACAAAAGAAAATGACTCTAAAGAGGGTTTTTTCACTTACATTTGT -GGGTTTATACAACAAAAGCTAGCTCTTGGAGGTTCCGTGGCTATAAAGATAACAGAACAT -TCTTGGAATGCTGATCTTTATAAGCTCATGGGACACTTCGCATGGTGGACAGCCTTTGTT -ACTAATGTGAATGCGTCATCATCTGAAGCATTTTTAATTGGATGTAATTATCTTGGCAAA -CCACGCGAACAAATAGATGGTTATGTCATGCATGCAAATTACATATTTTGGAGGAATACA -AATCCAATTCAGTTGTCTTCCTATTCTTTATTTGACATGAGTAAATTTCCCCTTAAATTA -AGGGGTACTGCTGTTATGTCTTTAAAAGAAGGTCAAATCAATGATATGATTTTATCTCTT -CTTAGTAAAGGTAGACTTATAATTAGAGAAAACAACAGAGTTGTTATTTCTAGTGATGTT -CTTGTTAACAACTAAACGAACAATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAG -TCAGTGTGTTAATCTTACAACCAGAACTCAATTACCCCCTGCATACACTAATTCTTTCAC -ACGTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACATTCAACTCAGGA -CTTGTTCTTACCTTTCTTTTCCAATGTTACTTGGTTCCATGCTATACATGTCTCTGGGAC -CAATGGTACTAAGAGGTTTGATAACCCTGTCCTACCATTTAATGATGGTGTTTATTTTGC -TTCCACTGAGAAGTCTAACATAATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAA -GACCCAGTCCCTACTTATTGTTAATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATT -TCAATTTTGTAATGATCCATTTTTGGGTGTTTATTACCACAAAAACAACAAAAGTTGGAT -GGAAAGTGAGTTCAGAGTTTATTCTAGTGCGAATAATTGCACTTTTGAATATGTCTCTCA -GCCTTTTCTTATGGACCTTGAAGGAAAACAGGGTAATTTCAAAAATCTTAGGGAATTTGT -GTTTAAGAATATTGATGGTTATTTTAAAATATATTCTAAGCACACGCCTATTAATTTAGT -GCGTGATCTCCCTCAGGGTTTTTCGGCTTTAGAACCATTGGTAGATTTGCCAATAGGTAT -TAACATCACTAGGTTTCAAACTTTACTTGCTTTACATAGAAGTTATTTGACTCCTGGTGA -TTCTTCTTCAGGTTGGACAGCTGGTGCTGCAGCTTATTATGTGGGTTATCTTCAACCTAG -GACTTTTCTATTAAAATATAATGAAAATGGAACCATTACAGATGCTGTAGACTGTGCACT -TGACCCTCTCTCAGAAACAAAGTGTACGTTGAAATCCTTCACTGTAGAAAAAGGAATCTA -TCAAACTTCTAACTTTAGAGTCCAACCAACAGAATCTATTGTTAGATTTCCTAATATTAC -AAACTTGTGCCCTTTTGGTGAAGTTTTTAACGCCACCAGATTTGCATCTGTTTATGCTTG -GAACAGGAAGAGAATCAGCAACTGTGTTGCTGATTATTCTGTCCTATATAATTCCGCATC -ATTTTCCACTTTTAAGTGTTATGGAGTGTCTCCTACTAAATTAAATGATCTCTGCTTTAC -TAATGTCTATGCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGG -GCAAACTGGAAAGATTGCTGATTATAATTATAAATTACCAGATGATTTTACAGGCTGCGT -TATAGCTTGGAATTCTAACAATCTTGATTCTAAGGTTGGTGGTAATTATAATTACCTGTA -TAGATTGTTTAGGAAGTCTAATCTCAAACCTTTTGAGAGAGATATTTCAACTGAAATCTA -TCAGGCCGGTAGCACACCTTGTAATGGTGTTGAAGGTTTTAATTGTTACTTTCCTTTACA -ATCATATGGTTTCCAACCCACTAATGGTGTTGGTTACCAACCATACAGAGTAGTAGTACT -TTCTTTTGAACTTCTACATGCACCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTT -GGTTAAAAACAAATGTGTCAATTTCAACTTCAATGGTTTAACAGGCACAGGTGTTCTTAC -TGAGTCTAACAAAAAGTTTCTGCCTTTCCAACAATTTGGCAGAGACATTGCTGACACTAC -TGATGCTGTCCGTGATCCACAGACACTTGAGATTCTTGACATTACACCATGTTCTTTTGG -TGGTGTCAGTGTTATAACACCAGGAACAAATACTTCTAACCAGGTTGCTGTTCTTTATCA -GGATGTTAACTGCACAGAAGTCCCTGTTGCTATTCATGCAGATCAACTTACTCCTACTTG -GCGTGTTTATTCTACAGGTTCTAATGTTTTTCAAACACGTGCAGGCTGTTTAATAGGGGC -TGAACATGTCAACAACTCATATGAGTGTGACATACCCATTGGTGCAGGTATATGCGCTAG -TTATCAGACTCAGACTAATTCTCCTCGGCGGGCACGTAGTGTAGCTAGTCAATCCATCAT -TGCCTACACTATGTCACTTGGTGCAGAAAATTCAGTTGCTTACTCTAATAACTCTATTGC -CATACCCACAAATTTTACTATTAGTGTTACCACAGAAATTCTACCAGTGTCTATGACCAA -GACATCAGTAGATTGTACAATGTACATTTGTGGTGATTCAACTGAATGCAGCAATCTTTT -GTTGCAATATGGCAGTTTTTGTACACAATTAAACCGTGCTTTAACTGGAATAGCTGTTGA -ACAAGACAAAAACACCCAAGAAGTTTTTGCACAAGTCAAACAAATTTACAAAACACCACC -AATTAAAGATTTTGGTGGTTTTAATTTTTCACAAATATTACCAGATCCATCAAAACCAAG -CAAGAGGTCATTTATTGAAGATCTACTTTTCAACAAAGTGACACTTGCAGATGCTGGCTT -CATCAAACAATATGGTGATTGCCTTGGTGATATTGCTGCTAGAGACCTCATTTGTGCACA -AAAGTTTAACGGCCTTACTGTTTTGCCACCTTTGCTCACAGATGAAATGATTGCTCAATA -CACTTCTGCACTGTTAGCGGGTACAATCACTTCTGGTTGGACCTTTGGTGCAGGTGCTGC -ATTACAAATACCATTTGCTATGCAAATGGCTTATAGGTTTAATGGTATTGGAGTTACACA -GAATGTTCTCTATGAGAACCAAAAATTGATTGCCAACCAATTTAATAGTGCTATTGGCAA -AATTCAAGACTCACTTTCTTCCACAGCAAGTGCACTTGGAAAACTTCAAGATGTGGTCAA -CCAAAATGCACAAGCTTTAAACACGCTTGTTAAACAACTTAGCTCCAATTTTGGTGCAAT -TTCAAGTGTTTTAAATGATATCCTTTCACGTCTTGACAAAGTTGAGGCTGAAGTGCAAAT -TGATAGGTTGATCACAGGCAGACTTCAAAGTTTGCAGACATATGTGACTCAACAATTAAT -TAGAGCTGCAGAAATCAGAGCTTCTGCTAATCTTGCTGCTACTAAAATGTCAGAGTGTGT -ACTTGGACAATCAAAAAGAGTTGATTTTTGTGGAAAGGGCTATCATCTTATGTCCTTCCC -TCAGTCAGCACCTCATGGTGTAGTCTTCTTGCATGTGACTTATGTCCCTGCACAAGAAAA -GAACTTCACAACTGCTCCTGCCATTTGTCATGATGGAAAAGCACACTTTCCTCGTGAAGG -TGTCTTTGTTTCAAATGGCACACACTGGTTTGTAACACAAAGGAATTTTTATGAACCACA -AATCATTACTACAGACAACACATTTGTGTCTGGTAACTGTGATGTTGTAATAGGAATTGT -CAACAACACAGTTTATGATCCTTTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGA -TAAATATTTTAAGAATCATACATCACCAGATGTTGATTTAGGTGACATCTCTGGCATTAA -TGCTTCAGTTGTAAACATTCAAAAAGAAATTGACCGCCTCAATGAGGTTGCCAAGAATTT -AAATGAATCTCTCATCGATCTCCAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCC -ATGGTACATTTGGCTAGGTTTTATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTAT -GCTTTGCTGTATGACCAGTTGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTG -CTGCAAATTTGATGAAGACGACTCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACAC -ATAAACGAACTTATGGATTTGTTTATGAGAATCTTCACAATTGGAACTGTAACTTTGAAG -CAAGGTGAAATCAAGGATGCTACTCCTTCAGATTTTGTTCGCGCTACTGCAACGATACCG -ATACAAGCCTCACTCCCTTTCGGATGGCTTATTGTTGGCGTTGCACTTCTTGCTGTTTTT -CAGAGCGCTTCCAAAATCATAACCCTCAAAAAGAGATGGCAACTAGCACTCTCCAAGGGT -GTTCACTTTGTTTGCAACTTGCTGTTGTTGTTTGTAACAGTTTACTCACACCTTTTGCTC -GTTGCTGCTGGCCTTGAAGCCCCTTTTCTCTATCTTTATGCTTTAGTCTACTTCTTGCAG -AGTATAAACTTTGTAAGAATAATAATGAGGCTTTGGCTTTGCTGGAAATGCCGTTCCAAA -AACCCATTACTTTATGATGCCAACTATTTTCTTTGCTGGCATACTAATTGTTACGACTAT -TGTATACCTTACAATAGTGTAACTTCTTCAATTGTCATTACTTCAGGTGATGGCACAACA -AGTCCTATTTCTGAACATGACTACCAGATTGGTGGTTATACTGAAAAATGGGAATCTGGA -GTAAAAGACTGTGTTGTATTACACAGTTACTTCACTTCAGACTATTACCAGCTGTACTCA -ACTCAATTGAGTACAGACACTGGTGTTGAACATGTTACCTTCTTCATCTACAATAAAATT -GTTGATGAGCCTGAAGAACATGTCCAAATTCACACAATCGACGGTTCATCCGGAGTTGTT -AATCCAGTAATGGAACCAATTTATGATGAACCGACGACGACTACTAGCGTGCCTTTGTAA -GCACAAGCTGATGAGTACGAACTTATGTACTCATTCGTTTCGGAAGAGACAGGTACGTTA -ATAGTTAATAGCGTACTTCTTTTTCTTGCTTTCGTGGTATTCTTGCTAGTTACACTAGCC -ATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTTGTA -AAACCTTCTTTTTACGTTTACTCTCGTGTTAAAAATCTGAATTCTTCTAGAGTTCCTGAT -CTTCTGGTCTAAACGAACTAAATATTATATTAGTTTTTCTGTTTGGAACTTTAATTTTAG -CCATGGCAGATTCCAACGGTACTATTACCGTTGAAGAGCTTAAAAAGCTCCTTGAACAAT -GGAACCTAGTAATAGGTTTCCTATTCCTTACATGGATTTGTCTTCTACAATTTGCCTATG -CCAACAGGAATAGGTTTTTGTATATAATTAAGTTAATTTTCCTCTGGCTGTTATGGCCAG -TAACTTTAGCTTGTTTTGTGCTTGCTGCTGTTTACAGAATAAATTGGATCACCGGTGGAA -TTGCTATCGCAATGGCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTT -TCAGACTGTTTGCGCGTACGCGTTCCATGTGGTCATTCAATCCAGAAACTAACATTCTTC -TCAACGTGCCACTCCATGGCACTATTCTGACCAGACCGCTTCTAGAAAGTGAACTCGTAA -TCGGAGCTGTGATCCTTCGTGGACATCTTCGTATTGCTGGACACCATCTAGGACGCTGTG -ACATCAAGGACCTGCCTAAAGAAATCACTGTTGCTACATCACGAACGCTTTCTTATTACA -AATTGGGAGCTTCGCAGCGTGTAGCAGGTGACTCAGGTTTTGCTGCATACAGTCGCTACA -GGATTGGCAACTATAAATTAAACACAGACCATTCCAGTAGCAGTGACAATATTGCTTTGC -TTGTACAGTAAGTGACAACAGATGTTTCATCTCGTTGACTTTCAGGTTACTATAGCAGAG -ATATTACTAATTATTATGAGGACTTTTAAAGTTTCCATTTGGAATCTTGATTACATCATA -AACCTCATAATTAAAAATTTATCTAAGTCACTAACTGAGAATAAATATTCTCAATTAGAT -GAAGAGCAACCAATGGAGATTGATTAAACGAACATGAAAATTATTCTTTTCTTGGCACTG -ATAACACTCGCTACTTGTGAGCTTTATCACTACCAAGAGTGTGTTAGAGGTACAACAGTA -CTTTTAAAAGAACCTTGCTCTTCTGGAACATACGAGGGCAATTCACCATTTCATCCTCTA -GCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGAC -GGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGA -CAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTT -ATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGATTGAACTTTCATTAATTGACT -TCTATTTGTGCTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTATCTTTT -GGTTCTCACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAAT -TTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTAC -AGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATT -CTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGG -ATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCT -GTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTT -CGTTCTATGAAGACTTTTTAGAGTATCATGACGTTCGTGTTGTTTTAGATTTCATCTAAA -CGAACAAACTAAAATGTCTGATAATGGACCCCAAAATCAGCGAAATGCACCCCGCATTAC -GTTTGGTGGACCCTCAGATTCAACTGGCAGTAACCAGAATGGAGAACGCAGTGGGGCGCG -ATCAAAACAACGTCGGCCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACCGCTCT -CACTCAACATGGCAAGGAAGACCTTAAATTCCCTCGAGGACAAGGCGTTCCAATTAACAC -CAATAGCAGTCCAGATGACCAAATTGGCTACTACCGAAGAGCTACCAGACGAATTCGTGG -TGGTGACGGTAAAATGAAAGATCTCAGTCCAAGATGGTATTTCTACTACCTAGGAACTGG -GCCAGAAGCTGGACTTCCCTATGGTGCTAACAAAGACGGCATCATATGGGTTGCAACTGA -GGGAGCCTTGAATACACCAAAAGATCACATTGGCACCCGCAATCCTGCTAACAATGCTGC -AATCGTGCTACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAAGGGAG -CAGAGGCGGCAGTCAAGCCTCTTCTCGTTCCTCATCACGTAGTCGCAACAGTTCAAGAAA -TTCAACTCCAGGCAGCAGTAGGGGAACTTCTCCTGCTAGAATGGCTGGCAATGGCGGTGA -TGCTGCTCTTGCTTTGCTGCTGCTTGACAGATTGAACCAGCTTGAGAGCAAAATGTCTGG -TAAAGGCCAACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCTTCTAA -GAAGCCTCGGCAAAAACGTACTGCCACTAAAGCATACAATGTAACACAAGCTTTCGGCAG -ACGTGGTCCAGAACAAACCCAAGGAAATTTTGGGGACCAGGAACTAATCAGACAAGGAAC -TGATTACAAACATTGGCCGCAAATTGCACAATTTGCCCCCAGCGCTTCAGCGTTCTTCGG -AATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGC -CATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCA -TATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGC -TGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCC -TGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTC -AACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGC -TTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGC -ACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTA -GGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGT -ACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAAT -TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAA -AAAAAAAAAAA diff --git a/example_output/olivar-ref.html b/example_output/olivar-ref.html deleted file mode 100644 index f562b18..0000000 --- a/example_output/olivar-ref.html +++ /dev/null @@ -1,14 +0,0 @@ - - - -
-
- - \ No newline at end of file diff --git a/example_output/olivar-ref.olvr b/example_output/olivar-ref.olvr deleted file mode 100644 index a1e1239..0000000 Binary files a/example_output/olivar-ref.olvr and /dev/null differ diff --git a/example_output/olivar-ref_PDR_Loss.html b/example_output/olivar-ref_PDR_Loss.html deleted file mode 100644 index 4e1b2b1..0000000 --- a/example_output/olivar-ref_PDR_Loss.html +++ /dev/null @@ -1,14 +0,0 @@ - - - -
-
- - \ No newline at end of file diff --git a/example_output/olivar-ref_risk.csv b/example_output/olivar-ref_risk.csv deleted file mode 100644 index 419a207..0000000 --- a/example_output/olivar-ref_risk.csv +++ /dev/null @@ -1,29892 +0,0 @@ -position,base,extreme GC,low complexity,non-specificity,variations,risk -1,A,0.0,0.0,0.0,0.0,0.0 -2,T,0.0,0.0,0.0,0.0,0.0 -3,T,0.0,0.0,0.0,0.0,0.0 -4,A,0.0,0.0,0.0,0.0,0.0 -5,A,0.0,0.0,0.0,0.0,0.0 -6,A,0.0,0.0,0.0,0.0,0.0 -7,G,0.0,0.0,0.0,0.0,0.0 -8,G,0.0,0.0,0.0,0.0,0.0 -9,T,0.0,0.0,0.0,0.0,0.0 -10,T,0.0,0.0,0.0,0.0,0.0 -11,T,0.0,0.0,0.0,0.0,0.0 -12,A,0.0,0.0,0.0,0.0,0.0 -13,T,0.0,0.0,0.0,0.0,0.0 -14,A,0.0,0.0,0.0,0.0,0.0 -15,C,0.0,0.0,0.006660088801184016,0.0,0.006660088801184016 -16,C,0.0,0.0,0.006660088801184016,0.0,0.006660088801184016 -17,T,0.0,0.0,0.006660088801184016,0.0,0.006660088801184016 -18,T,0.0,0.0,0.006660088801184016,0.0,0.006660088801184016 -19,C,0.0,0.0,0.006660088801184016,0.0,0.006660088801184016 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a/example_output/olivar-val_pool-1_ns-pair.csv b/example_output/olivar-val_pool-1_ns-pair.csv deleted file mode 100644 index 1c1d184..0000000 --- a/example_output/olivar-val_pool-1_ns-pair.csv +++ /dev/null @@ -1,2 +0,0 @@ -fP,rP,hits -olivar-ref_63_fP,olivar-ref_83_fP,1 diff --git a/example_output/olivar-val_pool-2.csv b/example_output/olivar-val_pool-2.csv deleted file mode 100644 index ad76cb5..0000000 --- a/example_output/olivar-val_pool-2.csv +++ /dev/null @@ -1,147 +0,0 @@ -name,seq,length,%GC,complexity,dG (60C),self_align,dimer_score,BLAST_hits -olivar-ref_2_fP,caacgagaaaacacacgtcca,21,0.47619047619047616,0.62026862066165,-11.81220169109346,0.13168724279835392,20.081814264167207,90 -olivar-ref_2_rP,accgtactgaatgccttcgag,21,0.5238095238095238,0.7079879189072642,-12.21132169109346,2.25,17.754911754911756,21 -olivar-ref_4_fP,aggttcttcttcgtaagaacggtaata,27,0.37037037037037035,0.6756101149480309,-12.172584198421493,0.19753086419753085,14.250451537663814,3 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a/example_output/olivar-val_pool-2_ns-amp.csv b/example_output/olivar-val_pool-2_ns-amp.csv deleted file mode 100644 index 1931ac8..0000000 --- a/example_output/olivar-val_pool-2_ns-amp.csv +++ /dev/null @@ -1,3 +0,0 @@ -fP,rP,acc,fP_start,fP_stop,rP_start,rP_stop,amp_len -olivar-ref_48_fP,olivar-ref_146_fP,NC_000012,66105195,66105217,66105475,66105456,281 -olivar-ref_6_rP,olivar-ref_6_rP,NC_000001,77366841,77366860,77368142,77368123,1302 diff --git a/example_output/olivar-val_pool-2_ns-pair.csv b/example_output/olivar-val_pool-2_ns-pair.csv deleted file mode 100644 index 452eead..0000000 --- a/example_output/olivar-val_pool-2_ns-pair.csv +++ /dev/null @@ -1,3 +0,0 @@ -fP,rP,hits -olivar-ref_48_fP,olivar-ref_146_fP,1 -olivar-ref_6_rP,olivar-ref_6_rP,1