From c22695726f694e58c0de48da898c099f36d4825d Mon Sep 17 00:00:00 2001 From: Jay Hesselberth Date: Thu, 23 Jan 2025 12:39:14 -0700 Subject: [PATCH 1/8] Fix CRAN ASAN error (#1159) Fixes 1157 I confirmed that clang-asan fails on current purrr with a similar error to what we're seeing in valr. This is in purrr-Ex.Rout from [this rhub check](https://github.com/jayhesselberth/purrr/actions/runs/12720310041/job/35461775454). ``` cleancall.c:110:46: runtime error: call to function cb_progress_done through pointer to incorrect function type 'void (*)(void *)' /__w/purrr/purrr/check/purrr.Rcheck/00_pkg_src/purrr/src/map.c:15: note: cb_progress_done defined here #0 0x7fd287f0d48b in call_exits /__w/purrr/purrr/check/purrr.Rcheck/00_pkg_src/purrr/src/cleancall.c:110:46 #1 0x7fd28ddf1131 in R_ExecWithCleanup /tmp/R-devel/src/main/context.c:913:5 #2 0x7fd287f0cdf2 in r_with_cleanup_context /__w/purrr/purrr/check/purrr.Rcheck/00_pkg_src/purrr/src/cleancall.c:133:14 ``` This simple patch proposed on the R-devel mailing list fixes that clang-asan error ([clang asan run](https://github.com/jayhesselberth/purrr/actions/runs/12718786947/job/35457848128)). Also updated the rhub action because it was useful to debug this issue. --- .github/workflows/rhub.yaml | 36 ++++++++++++++++++++++++++---------- src/map.c | 3 ++- 2 files changed, 28 insertions(+), 11 deletions(-) diff --git a/.github/workflows/rhub.yaml b/.github/workflows/rhub.yaml index 48b12a46..74ec7b05 100644 --- a/.github/workflows/rhub.yaml +++ b/.github/workflows/rhub.yaml @@ -1,13 +1,13 @@ -# R-hub's genetic GitHub Actions workflow file. It's canonical location is at -# https://github.com/r-hub/rhub2/blob/v1/inst/workflow/rhub.yaml +# R-hub's generic GitHub Actions workflow file. It's canonical location is at +# https://github.com/r-hub/actions/blob/v1/workflows/rhub.yaml # You can update this file to a newer version using the rhub2 package: # -# rhub2::rhub_setup() +# rhub::rhub_setup() # # It is unlikely that you need to modify this file manually. name: R-hub -run-name: ${{ github.event.inputs.name || format('Manually run by {0}', github.triggering_actor) }} (${{ github.event.inputs.id }}) +run-name: "${{ github.event.inputs.id }}: ${{ github.event.inputs.name || format('Manually run by {0}', github.triggering_actor) }}" on: workflow_dispatch: @@ -33,7 +33,7 @@ jobs: steps: # NO NEED TO CHECKOUT HERE - - uses: r-hub/rhub2/actions/rhub-setup@v1 + - uses: r-hub/actions/setup@v1 with: config: ${{ github.event.inputs.config }} id: rhub-setup @@ -51,8 +51,16 @@ jobs: image: ${{ matrix.config.container }} steps: - - uses: actions/checkout@v3 - - uses: r-hub/rhub2/actions/rhub-check@v1 + - uses: r-hub/actions/checkout@v1 + - uses: r-hub/actions/platform-info@v1 + with: + token: ${{ secrets.RHUB_TOKEN }} + job-config: ${{ matrix.config.job-config }} + - uses: r-hub/actions/setup-deps@v1 + with: + token: ${{ secrets.RHUB_TOKEN }} + job-config: ${{ matrix.config.job-config }} + - uses: r-hub/actions/run-check@v1 with: token: ${{ secrets.RHUB_TOKEN }} job-config: ${{ matrix.config.job-config }} @@ -68,12 +76,20 @@ jobs: config: ${{ fromJson(needs.setup.outputs.platforms) }} steps: - - uses: actions/checkout@v3 - - uses: r-hub/rhub2/actions/rhub-setup-r@v1 + - uses: r-hub/actions/checkout@v1 + - uses: r-hub/actions/setup-r@v1 + with: + job-config: ${{ matrix.config.job-config }} + token: ${{ secrets.RHUB_TOKEN }} + - uses: r-hub/actions/platform-info@v1 + with: + token: ${{ secrets.RHUB_TOKEN }} + job-config: ${{ matrix.config.job-config }} + - uses: r-hub/actions/setup-deps@v1 with: job-config: ${{ matrix.config.job-config }} token: ${{ secrets.RHUB_TOKEN }} - - uses: r-hub/rhub2/actions/rhub-check@v1 + - uses: r-hub/actions/run-check@v1 with: job-config: ${{ matrix.config.job-config }} token: ${{ secrets.RHUB_TOKEN }} diff --git a/src/map.c b/src/map.c index 75f417a6..628e784a 100644 --- a/src/map.c +++ b/src/map.c @@ -12,7 +12,8 @@ #include "cleancall.h" static -void cb_progress_done(SEXP bar) { +void cb_progress_done(void* bar_ptr) { + SEXP bar = (SEXP)bar_ptr; cli_progress_done(bar); R_ReleaseObject(bar); } From 00b4e550fa38f569dc16e46996f250f43b1bfc11 Mon Sep 17 00:00:00 2001 From: Charlie Gao <53399081+shikokuchuo@users.noreply.github.com> Date: Thu, 23 Jan 2025 19:40:05 +0000 Subject: [PATCH 2/8] Move into compliance with C API (#1165) --- src/backports.c | 10 ++++++++++ src/backports.h | 6 +++++- src/conditions.c | 6 ++---- src/map.c | 2 +- src/pluck.c | 2 +- 5 files changed, 19 insertions(+), 7 deletions(-) diff --git a/src/backports.c b/src/backports.c index 0b7adc3a..5b690a35 100644 --- a/src/backports.c +++ b/src/backports.c @@ -8,3 +8,13 @@ SEXP Rf_installChar(SEXP x) { return Rf_install(CHAR(x)); } #endif + +#if defined(R_VERSION) && R_VERSION < R_Version(4, 5, 0) +SEXP R_mkClosure(SEXP formals, SEXP body, SEXP env) { + SEXP fun = Rf_allocSExp(CLOSXP); + SET_FORMALS(fun, formals); + SET_BODY(fun, body); + SET_CLOENV(fun, env); + return fun; +} +#endif diff --git a/src/backports.h b/src/backports.h index 0ae9abb0..1de5b801 100644 --- a/src/backports.h +++ b/src/backports.h @@ -4,7 +4,11 @@ #include #if defined(R_VERSION) && R_VERSION < R_Version(3, 2, 0) -SEXP Rf_installChar(SEXP x); +SEXP Rf_installChar(SEXP); +#endif + +#if defined(R_VERSION) && R_VERSION < R_Version(4, 5, 0) +SEXP R_mkClosure(SEXP, SEXP, SEXP); #endif #endif diff --git a/src/conditions.c b/src/conditions.c index 5a00d0c4..7ffb43b1 100644 --- a/src/conditions.c +++ b/src/conditions.c @@ -1,5 +1,6 @@ #define R_NO_REMAP #include +#include "backports.h" #include "utils.h" #include @@ -19,10 +20,7 @@ SEXP current_env(void) { SEXP parsed = PROTECT(R_ParseVector(code, -1, &status, R_NilValue)); SEXP body = VECTOR_ELT(parsed, 0); - SEXP fn = PROTECT(Rf_allocSExp(CLOSXP)); - SET_FORMALS(fn, R_NilValue); - SET_BODY(fn, body); - SET_CLOENV(fn, R_BaseEnv); + SEXP fn = PROTECT(R_mkClosure(R_NilValue, body, R_BaseEnv)); call = Rf_lang1(fn); R_PreserveObject(call); diff --git a/src/map.c b/src/map.c index 628e784a..30195671 100644 --- a/src/map.c +++ b/src/map.c @@ -165,7 +165,7 @@ SEXP pmap_impl(SEXP env, PROTECT_WITH_INDEX(call, &call_shelter); bool has_call_names = call_names != R_NilValue; - const SEXP* v_call_names = has_call_names ? STRING_PTR(call_names) : NULL; + const SEXP* v_call_names = has_call_names ? STRING_PTR_RO(call_names) : NULL; int call_n = INTEGER_ELT(ffi_call_n, 0); for (int j = call_n - 1; j >= 0; --j) { diff --git a/src/pluck.c b/src/pluck.c index 154fe3c8..7006a40b 100644 --- a/src/pluck.c +++ b/src/pluck.c @@ -152,7 +152,7 @@ SEXP extract_env(SEXP x, SEXP index_i, int i, bool strict) { } SEXP sym = Rf_installChar(index); - SEXP out = Rf_findVarInFrame3(x, sym, TRUE); + SEXP out = Rf_findVarInFrame(x, sym); if (check_unbound_value(out, index_i, strict)) { return R_NilValue; From e9aa751c34ad851f81dcfab88c95919c596a3cfd Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Mon, 27 Jan 2025 15:13:35 -0600 Subject: [PATCH 3/8] Polish news --- NEWS.md | 12 +++++++----- 1 file changed, 7 insertions(+), 5 deletions(-) diff --git a/NEWS.md b/NEWS.md index 815872cd..4257adb1 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,10 +1,12 @@ # purrr (development version) -* Added a test to assert that `list_transpose()` does not work on data frames - (@KimLopezGuell, #1141, #1149). -* Added `imap_vec()` (#1084) -* `list_transpose()` inspects all elements to determine the correct - template if it's not provided by the user (#1128, @krlmlr). +* Varies fixed to bring purrr back into compliance with R CMD check (@shikokuchuo, @jayhesselberth). + +* Added missing `imap_vec()` (#1084) + +* `list_transpose()` now asserts that it does not work on data frames + (@KimLopezGuell, #1141, #1149), and inspects all elements to determine + the correct template if not provided by the user (#1128, @krlmlr). # purrr 1.0.2 From 8ae2c1f66881adb4ba3239ee6b305c1978125ff9 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Mon, 27 Jan 2025 15:17:54 -0600 Subject: [PATCH 4/8] Add ROR ID --- DESCRIPTION | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index fed00772..cec9d529 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -5,14 +5,15 @@ Authors@R: c( person("Hadley", "Wickham", , "hadley@posit.co", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-4757-117X")), person("Lionel", "Henry", , "lionel@posit.co", role = "aut"), - person("Posit Software, PBC", role = c("cph", "fnd")) + person("Posit Software, PBC", role = c("cph", "fnd"), + comment = c(ROR = "https://ror.org/03wc8by49")) ) Description: A complete and consistent functional programming toolkit for R. License: MIT + file LICENSE URL: https://purrr.tidyverse.org/, https://github.com/tidyverse/purrr BugReports: https://github.com/tidyverse/purrr/issues -Depends: +Depends: R (>= 4.0) Imports: cli (>= 3.6.1), @@ -20,7 +21,7 @@ Imports: magrittr (>= 1.5.0), rlang (>= 1.1.1), vctrs (>= 0.6.3) -Suggests: +Suggests: covr, dplyr (>= 0.7.8), httr, @@ -32,7 +33,7 @@ Suggests: tidyselect LinkingTo: cli -VignetteBuilder: +VignetteBuilder: knitr Biarch: true Config/build/compilation-database: true From 57ba6819f450da6f0bc21ec14a760fcc1698d7eb Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Tue, 28 Jan 2025 08:28:02 -0600 Subject: [PATCH 5/8] Check revdeps --- cran-comments.md | 2 +- revdep/README.md | 83 +- revdep/cran.md | 70 +- revdep/failures.md | 3263 +++++++++++++++++++++++++++++++++++++++----- revdep/problems.md | 116 +- 5 files changed, 3095 insertions(+), 439 deletions(-) diff --git a/cran-comments.md b/cran-comments.md index 7b711def..df61253d 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -4,4 +4,4 @@ ## revdepcheck results -This was a patch release to fix R CMD check issues; I did not check revdeps. +This was a patch release to fix R CMD check issues. I saw 2 false positives in my revdepchecks (meta and waywiser) and failed to check a further 45 packages. diff --git a/revdep/README.md b/revdep/README.md index 9a347d94..770d211f 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,30 +1,65 @@ # Revdeps -## Failed to check (15) +## Failed to check (51) -|package |version |error |warning |note | -|:------------|:-------|:-----|:-------|:----| -|elbird |0.2.5 |1 | | | -|ggPMX |? | | | | -|immcp |? | | | | -|ImputeRobust |? | | | | -|NA |? | | | | -|NA |? | | | | -|NA |? | | | | -|NA |? | | | | -|numbat |? | | | | -|NA |? | | | | -|pathwayTMB |? | | | | -|Platypus |? | | | | -|NA |? | | | | -|RVA |? | | | | -|NA |? | | | | +|package |version |error |warning |note | +|:----------------|:-------|:-----|:-------|:----| +|AovBay |0.1.0 |1 | | | +|arealDB |0.9.4 |1 | | | +|autoReg |? | | | | +|bayesCT |0.99.3 |1 | | | +|bspcov |1.0.1 |1 | | | +|censored |? | | | | +|CGPfunctions |0.6.3 |1 | | | +|CSCNet |? | | | | +|dartR.base |? | | | | +|dartR.popgen |? | | | | +|deeptrafo |? | | | | +|dibble |? | | | | +|DR.SC |3.4 |1 | | | +|epizootic |1.0.0 |1 | | | +|GeoTox |? | | | | +|GseaVis |? | | | | +|hettx |0.1.3 |1 | | | +|immcp |? | | | | +|invivoPKfit |2.0.0 |1 | | | +|jsmodule |? | | | | +|lnmixsurv |? | | | | +|lsirm12pl |1.3.3 |1 | | | +|MantaID |? | | | | +|metajam |0.3.1 |1 | | | +|miWQS |0.4.4 |1 | |1 | +|multinma |0.7.2 |1 | | | +|nesRdata |0.3.1 |1 | | | +|obliqueRSF |? | | | | +|ontologics |0.7.4 |1 | | | +|OVtool |1.0.3 |1 | | | +|pammtools |? | | | | +|pathwayTMB |? | | | | +|pencal |? | | | | +|quid |0.0.1 |1 | | | +|rdflib |0.2.9 |1 | | | +|rmlnomogram |? | | | | +|robber |? | | | | +|rplec |? | | | | +|RVA |? | | | | +|scCustomize |3.0.1 |1 | |1 | +|scpi |2.2.6 |1 | | | +|SCpubr |? | | | | +|SEERaBomb |2019.2 |1 | | | +|SensIAT |? | | | | +|SimplyAgree |0.2.0 |1 | | | +|ssdGSA |? | | | | +|SSHAARP |? | | | | +|stabiliser |1.0.6 |1 | | | +|tidyseurat |0.8.0 |1 | | | +|TriDimRegression |1.0.2 |1 | | | +|WRTDStidal |1.1.4 |1 | | | -## New problems (3) +## New problems (2) -|package |version |error |warning |note | -|:---------|:-------|:------|:-------|:----| -|[ast2ast](problems.md#ast2ast)|0.2.1 |__+1__ | | | -|[openalexR](problems.md#openalexr)|1.0.0 | |__+1__ | | -|[rearrr](problems.md#rearrr)|0.3.2 |__+1__ | | | +|package |version |error |warning |note | +|:--------|:-------|:------|:-------|:--------| +|[meta](problems.md#meta)|8.0-2 | | |1 __+1__ | +|[waywiser](problems.md#waywiser)|0.6.0 |__+1__ | |1 | diff --git a/revdep/cran.md b/revdep/cran.md index 5c444f88..aefac2fd 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,31 +1,65 @@ ## revdepcheck results -We checked 1437 reverse dependencies (1430 from CRAN + 7 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. +We checked 1943 reverse dependencies (1937 from CRAN + 6 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. - * We saw 3 new problems - * We failed to check 8 packages + * We saw 2 new problems + * We failed to check 45 packages Issues with CRAN packages are summarised below. ### New problems (This reports the first line of each new failure) -* ast2ast - checking tests ... ERROR +* meta + checking installed package size ... NOTE -* openalexR - checking re-building of vignette outputs ... WARNING - -* rearrr - checking tests ... ERROR +* waywiser + checking running R code from vignettes ... ERROR ### Failed to check -* elbird (NA) -* ggPMX (NA) -* immcp (NA) -* ImputeRobust (NA) -* numbat (NA) -* pathwayTMB (NA) -* Platypus (NA) -* RVA (NA) +* AovBay (NA) +* arealDB (NA) +* autoReg (NA) +* bayesCT (NA) +* bspcov (NA) +* censored (NA) +* CGPfunctions (NA) +* CSCNet (NA) +* dartR.base (NA) +* dartR.popgen (NA) +* deeptrafo (NA) +* DR.SC (NA) +* epizootic (NA) +* GseaVis (NA) +* hettx (NA) +* immcp (NA) +* invivoPKfit (NA) +* jsmodule (NA) +* lnmixsurv (NA) +* lsirm12pl (NA) +* metajam (NA) +* miWQS (NA) +* multinma (NA) +* nesRdata (NA) +* obliqueRSF (NA) +* ontologics (NA) +* OVtool (NA) +* pammtools (NA) +* pathwayTMB (NA) +* pencal (NA) +* quid (NA) +* rdflib (NA) +* robber (NA) +* RVA (NA) +* scCustomize (NA) +* scpi (NA) +* SCpubr (NA) +* SEERaBomb (NA) +* SimplyAgree (NA) +* ssdGSA (NA) +* SSHAARP (NA) +* stabiliser (NA) +* tidyseurat (NA) +* TriDimRegression (NA) +* WRTDStidal (NA) diff --git a/revdep/failures.md b/revdep/failures.md index 309c9e25..9281836d 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -1,23 +1,23 @@ -# elbird +# AovBay
-* Version: 0.2.5 -* GitHub: https://github.com/mrchypark/elbird -* Source code: https://github.com/cran/elbird -* Date/Publication: 2022-08-12 15:50:02 UTC -* Number of recursive dependencies: 54 +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/AovBay +* Date/Publication: 2021-07-22 06:30:02 UTC +* Number of recursive dependencies: 147 -Run `revdepcheck::cloud_details(, "elbird")` for more info +Run `revdepcheck::cloud_details(, "AovBay")` for more info
## In both -* checking whether package ‘elbird’ can be installed ... ERROR +* checking whether package ‘AovBay’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/elbird/new/elbird.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/AovBay/new/AovBay.Rcheck/00install.out’ for details. ``` ## Installation @@ -25,194 +25,134 @@ Run `revdepcheck::cloud_details(, "elbird")` for more info ### Devel ``` -* installing *source* package ‘elbird’ ... -** package ‘elbird’ successfully unpacked and MD5 sums checked -** using staged installation -/usr/bin/uname -Prior system libkiwi installation not found -Preparing to download and build library from source... -------------------------------[ ELBIRD ]------------------------------ -Configuration failed because 'git' was not found. -If you want to kiwi build from source in package installation prosess, -make sure git and cmake work in system. -------------------------------------------------------------------------- -ERROR: configuration failed for package ‘elbird’ -* removing ‘/tmp/workdir/elbird/new/elbird.Rcheck/elbird’ - - -``` -### CRAN - -``` -* installing *source* package ‘elbird’ ... -** package ‘elbird’ successfully unpacked and MD5 sums checked +* installing *source* package ‘AovBay’ ... +** package ‘AovBay’ successfully unpacked and MD5 sums checked ** using staged installation -/usr/bin/uname -Prior system libkiwi installation not found -Preparing to download and build library from source... -------------------------------[ ELBIRD ]------------------------------ -Configuration failed because 'git' was not found. -If you want to kiwi build from source in package installation prosess, -make sure git and cmake work in system. -------------------------------------------------------------------------- -ERROR: configuration failed for package ‘elbird’ -* removing ‘/tmp/workdir/elbird/old/elbird.Rcheck/elbird’ - - -``` -# ggPMX - -
- -* Version: 1.2.8 -* GitHub: https://github.com/ggPMXdevelopment/ggPMX -* Source code: https://github.com/cran/ggPMX -* Date/Publication: 2022-06-17 23:10:02 UTC -* Number of recursive dependencies: 177 - -Run `revdepcheck::cloud_details(, "ggPMX")` for more info - -
- -## Error before installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 -### Devel -``` -* using log directory ‘/tmp/workdir/ggPMX/new/ggPMX.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ggPMX/DESCRIPTION’ ... OK -* this is package ‘ggPMX’ version ‘1.2.8’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... NOTE +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, ... - [ FAIL 1 | WARN 14 | SKIP 8 | PASS 327 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 2 NOTEs - - - +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘AovBay’ +* removing ‘/tmp/workdir/AovBay/new/AovBay.Rcheck/AovBay’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/ggPMX/old/ggPMX.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ggPMX/DESCRIPTION’ ... OK -* this is package ‘ggPMX’ version ‘1.2.8’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... NOTE -... - [ FAIL 1 | WARN 14 | SKIP 8 | PASS 327 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 2 NOTEs - +* installing *source* package ‘AovBay’ ... +** package ‘AovBay’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘AovBay’ +* removing ‘/tmp/workdir/AovBay/old/AovBay.Rcheck/AovBay’ ``` -# immcp +# arealDB
-* Version: 1.0.3 -* GitHub: https://github.com/YuanlongHu/immcp -* Source code: https://github.com/cran/immcp -* Date/Publication: 2022-05-12 05:50:02 UTC -* Number of recursive dependencies: 194 +* Version: 0.9.4 +* GitHub: https://github.com/luckinet/arealDB +* Source code: https://github.com/cran/arealDB +* Date/Publication: 2025-01-20 13:40:05 UTC +* Number of recursive dependencies: 110 -Run `revdepcheck::cloud_details(, "immcp")` for more info +Run `revdepcheck::cloud_details(, "arealDB")` for more info
-## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/immcp/new/immcp.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘immcp/DESCRIPTION’ ... OK -* this is package ‘immcp’ version ‘1.0.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ +## In both -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR +* checking whether package ‘arealDB’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/arealDB/new/arealDB.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘arealDB’ ... +** package ‘arealDB’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘arealDB’ +* removing ‘/tmp/workdir/arealDB/new/arealDB.Rcheck/arealDB’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/immcp/old/immcp.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘immcp/DESCRIPTION’ ... OK -* this is package ‘immcp’ version ‘1.0.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - +* installing *source* package ‘arealDB’ ... +** package ‘arealDB’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘arealDB’ +* removing ‘/tmp/workdir/arealDB/old/arealDB.Rcheck/arealDB’ ``` -# ImputeRobust +# autoReg
-* Version: 1.3-1 -* GitHub: NA -* Source code: https://github.com/cran/ImputeRobust -* Date/Publication: 2018-11-30 12:10:03 UTC -* Number of recursive dependencies: 41 +* Version: 0.3.3 +* GitHub: https://github.com/cardiomoon/autoReg +* Source code: https://github.com/cran/autoReg +* Date/Publication: 2023-11-14 05:53:27 UTC +* Number of recursive dependencies: 215 -Run `revdepcheck::cloud_details(, "ImputeRobust")` for more info +Run `revdepcheck::cloud_details(, "autoReg")` for more info
@@ -221,23 +161,27 @@ Run `revdepcheck::cloud_details(, "ImputeRobust")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/ImputeRobust/new/ImputeRobust.Rcheck’ -* using R version 4.1.1 (2021-08-10) +* using log directory ‘/tmp/workdir/autoReg/new/autoReg.Rcheck’ +* using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘ImputeRobust/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘ImputeRobust’ version ‘1.3-1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘extremevalues’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. +* checking for file ‘autoReg/DESCRIPTION’ ... OK +... +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘Automatic_Regression_Modeling.Rmd’ using ‘UTF-8’... OK + ‘Bootstrap_Prediction.Rmd’ using ‘UTF-8’... OK + ‘Getting_started.Rmd’ using ‘UTF-8’... OK + ‘Statiastical_test_in_gaze.Rmd’ using ‘UTF-8’... OK + ‘Survival.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK * DONE -Status: 1 ERROR +Status: OK @@ -247,109 +191,170 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/ImputeRobust/old/ImputeRobust.Rcheck’ -* using R version 4.1.1 (2021-08-10) +* using log directory ‘/tmp/workdir/autoReg/old/autoReg.Rcheck’ +* using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘ImputeRobust/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘ImputeRobust’ version ‘1.3-1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘extremevalues’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. +* checking for file ‘autoReg/DESCRIPTION’ ... OK +... +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘Automatic_Regression_Modeling.Rmd’ using ‘UTF-8’... OK + ‘Bootstrap_Prediction.Rmd’ using ‘UTF-8’... OK + ‘Getting_started.Rmd’ using ‘UTF-8’... OK + ‘Statiastical_test_in_gaze.Rmd’ using ‘UTF-8’... OK + ‘Survival.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK * DONE -Status: 1 ERROR +Status: OK ``` -# NA +# bayesCT
-* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 +* Version: 0.99.3 +* GitHub: https://github.com/thevaachandereng/bayesCT +* Source code: https://github.com/cran/bayesCT +* Date/Publication: 2020-07-01 09:30:02 UTC +* Number of recursive dependencies: 121 -Run `revdepcheck::cloud_details(, "NA")` for more info +Run `revdepcheck::cloud_details(, "bayesCT")` for more info
-## Error before installation - -### Devel - -``` +## In both +* checking whether package ‘bayesCT’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bayesCT/new/bayesCT.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘bayesCT’ ... +** package ‘bayesCT’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bayesCT’ +* removing ‘/tmp/workdir/bayesCT/new/bayesCT.Rcheck/bayesCT’ ``` ### CRAN ``` - - - - +* installing *source* package ‘bayesCT’ ... +** package ‘bayesCT’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bayesCT’ +* removing ‘/tmp/workdir/bayesCT/old/bayesCT.Rcheck/bayesCT’ ``` -# NA +# bspcov
-* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 +* Version: 1.0.1 +* GitHub: https://github.com/statjs/bspcov +* Source code: https://github.com/cran/bspcov +* Date/Publication: 2024-11-13 20:10:02 UTC +* Number of recursive dependencies: 111 -Run `revdepcheck::cloud_details(, "NA")` for more info +Run `revdepcheck::cloud_details(, "bspcov")` for more info
-## Error before installation - -### Devel - -``` +## In both +* checking whether package ‘bspcov’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bspcov/new/bspcov.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘bspcov’ ... +** package ‘bspcov’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bspcov’ +* removing ‘/tmp/workdir/bspcov/new/bspcov.Rcheck/bspcov’ ``` ### CRAN ``` - - - - +* installing *source* package ‘bspcov’ ... +** package ‘bspcov’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bspcov’ +* removing ‘/tmp/workdir/bspcov/old/bspcov.Rcheck/bspcov’ ``` -# NA +# censored
-* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 +* Version: 0.3.2 +* GitHub: https://github.com/tidymodels/censored +* Source code: https://github.com/cran/censored +* Date/Publication: 2024-06-11 18:10:02 UTC +* Number of recursive dependencies: 163 -Run `revdepcheck::cloud_details(, "NA")` for more info +Run `revdepcheck::cloud_details(, "censored")` for more info
@@ -358,7 +363,27 @@ Run `revdepcheck::cloud_details(, "NA")` for more info ### Devel ``` +* using log directory ‘/tmp/workdir/censored/new/censored.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘censored/DESCRIPTION’ ... OK +... +* this is package ‘censored’ version ‘0.3.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required and available but unsuitable version: ‘survival’ +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR @@ -368,59 +393,108 @@ Run `revdepcheck::cloud_details(, "NA")` for more info ### CRAN ``` +* using log directory ‘/tmp/workdir/censored/old/censored.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘censored/DESCRIPTION’ ... OK +... +* this is package ‘censored’ version ‘0.3.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required and available but unsuitable version: ‘survival’ +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR ``` -# NA +# CGPfunctions
-* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 +* Version: 0.6.3 +* GitHub: https://github.com/ibecav/CGPfunctions +* Source code: https://github.com/cran/CGPfunctions +* Date/Publication: 2020-11-12 14:50:09 UTC +* Number of recursive dependencies: 155 -Run `revdepcheck::cloud_details(, "NA")` for more info +Run `revdepcheck::cloud_details(, "CGPfunctions")` for more info
-## Error before installation - -### Devel - -``` +## In both +* checking whether package ‘CGPfunctions’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘CGPfunctions’ ... +** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘CGPfunctions’ +* removing ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/CGPfunctions’ ``` ### CRAN ``` - - - - +* installing *source* package ‘CGPfunctions’ ... +** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘CGPfunctions’ +* removing ‘/tmp/workdir/CGPfunctions/old/CGPfunctions.Rcheck/CGPfunctions’ ``` -# numbat +# CSCNet
-* Version: 1.1.0 -* GitHub: https://github.com/kharchenkolab/numbat -* Source code: https://github.com/cran/numbat -* Date/Publication: 2022-11-29 18:30:02 UTC -* Number of recursive dependencies: 183 +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/CSCNet +* Date/Publication: 2022-11-08 18:50:02 UTC +* Number of recursive dependencies: 171 -Run `revdepcheck::cloud_details(, "numbat")` for more info +Run `revdepcheck::cloud_details(, "CSCNet")` for more info
@@ -429,17 +503,22 @@ Run `revdepcheck::cloud_details(, "numbat")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/numbat/new/numbat.Rcheck’ -* using R version 4.1.1 (2021-08-10) +* using log directory ‘/tmp/workdir/CSCNet/new/CSCNet.Rcheck’ +* using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘numbat/DESCRIPTION’ ... OK -* this is package ‘numbat’ version ‘1.1.0’ +* checking for file ‘CSCNet/DESCRIPTION’ ... OK +... +* this is package ‘CSCNet’ version ‘0.1.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Packages required but not available: 'ggtree', 'scistreer' +Package required but not available: ‘riskRegression’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -454,17 +533,22 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/numbat/old/numbat.Rcheck’ -* using R version 4.1.1 (2021-08-10) +* using log directory ‘/tmp/workdir/CSCNet/old/CSCNet.Rcheck’ +* using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘numbat/DESCRIPTION’ ... OK -* this is package ‘numbat’ version ‘1.1.0’ +* checking for file ‘CSCNet/DESCRIPTION’ ... OK +... +* this is package ‘CSCNet’ version ‘0.1.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Packages required but not available: 'ggtree', 'scistreer' +Package required but not available: ‘riskRegression’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -476,16 +560,17 @@ Status: 1 ERROR ``` -# NA +# dartR.base
-* Version: NA +* Version: 0.98 * GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 +* Source code: https://github.com/cran/dartR.base +* Date/Publication: 2024-09-19 13:20:02 UTC +* Number of recursive dependencies: 288 -Run `revdepcheck::cloud_details(, "NA")` for more info +Run `revdepcheck::cloud_details(, "dartR.base")` for more info
@@ -494,7 +579,27 @@ Run `revdepcheck::cloud_details(, "NA")` for more info ### Devel ``` +* using log directory ‘/tmp/workdir/dartR.base/new/dartR.base.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘dartR.base/DESCRIPTION’ ... OK +... +* this is package ‘dartR.base’ version ‘0.98’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘SNPassoc’ +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR @@ -504,24 +609,44 @@ Run `revdepcheck::cloud_details(, "NA")` for more info ### CRAN ``` +* using log directory ‘/tmp/workdir/dartR.base/old/dartR.base.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘dartR.base/DESCRIPTION’ ... OK +... +* this is package ‘dartR.base’ version ‘0.98’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘SNPassoc’ +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR ``` -# pathwayTMB +# dartR.popgen
-* Version: 0.1.3 +* Version: 1.0.0 * GitHub: NA -* Source code: https://github.com/cran/pathwayTMB -* Date/Publication: 2022-08-09 13:50:02 UTC -* Number of recursive dependencies: 221 +* Source code: https://github.com/cran/dartR.popgen +* Date/Publication: 2024-06-27 23:20:04 UTC +* Number of recursive dependencies: 175 -Run `revdepcheck::cloud_details(, "pathwayTMB")` for more info +Run `revdepcheck::cloud_details(, "dartR.popgen")` for more info
@@ -530,18 +655,22 @@ Run `revdepcheck::cloud_details(, "pathwayTMB")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/pathwayTMB/new/pathwayTMB.Rcheck’ -* using R version 4.1.1 (2021-08-10) +* using log directory ‘/tmp/workdir/dartR.popgen/new/dartR.popgen.Rcheck’ +* using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘pathwayTMB/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘pathwayTMB’ version ‘0.1.3’ +* checking for file ‘dartR.popgen/DESCRIPTION’ ... OK +... +* this is package ‘dartR.popgen’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ +Package required but not available: ‘dartR.base’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -556,18 +685,22 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/pathwayTMB/old/pathwayTMB.Rcheck’ -* using R version 4.1.1 (2021-08-10) +* using log directory ‘/tmp/workdir/dartR.popgen/old/dartR.popgen.Rcheck’ +* using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘pathwayTMB/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘pathwayTMB’ version ‘0.1.3’ +* checking for file ‘dartR.popgen/DESCRIPTION’ ... OK +... +* this is package ‘dartR.popgen’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ +Package required but not available: ‘dartR.base’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -579,17 +712,17 @@ Status: 1 ERROR ``` -# Platypus +# deeptrafo
-* Version: 3.4.1 -* GitHub: NA -* Source code: https://github.com/cran/Platypus -* Date/Publication: 2022-08-15 07:20:20 UTC -* Number of recursive dependencies: 356 +* Version: 1.0-0 +* GitHub: https://github.com/neural-structured-additive-learning/deeptrafo +* Source code: https://github.com/cran/deeptrafo +* Date/Publication: 2024-12-03 18:40:02 UTC +* Number of recursive dependencies: 109 -Run `revdepcheck::cloud_details(, "Platypus")` for more info +Run `revdepcheck::cloud_details(, "deeptrafo")` for more info
@@ -598,22 +731,22 @@ Run `revdepcheck::cloud_details(, "Platypus")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/Platypus/new/Platypus.Rcheck’ -* using R version 4.1.1 (2021-08-10) +* using log directory ‘/tmp/workdir/deeptrafo/new/deeptrafo.Rcheck’ +* using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘Platypus/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘Platypus’ version ‘3.4.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK +* checking for file ‘deeptrafo/DESCRIPTION’ ... OK ... +* checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘ggtree’ +Package required but not available: ‘mlt’ -Packages suggested but not available for checking: - 'Matrix.utils', 'monocle3', 'ProjecTILs', 'SeuratWrappers' +Packages suggested but not available for checking: 'tram', 'cotram' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -628,22 +761,22 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/Platypus/old/Platypus.Rcheck’ -* using R version 4.1.1 (2021-08-10) +* using log directory ‘/tmp/workdir/deeptrafo/old/deeptrafo.Rcheck’ +* using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘Platypus/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘Platypus’ version ‘3.4.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK +* checking for file ‘deeptrafo/DESCRIPTION’ ... OK ... +* checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘ggtree’ +Package required but not available: ‘mlt’ -Packages suggested but not available for checking: - 'Matrix.utils', 'monocle3', 'ProjecTILs', 'SeuratWrappers' +Packages suggested but not available for checking: 'tram', 'cotram' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -655,16 +788,16 @@ Status: 1 ERROR ``` -# NA +# dibble
* Version: NA * GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 +* Source code: https://github.com/cran/dibble +* Number of recursive dependencies: 51 -Run `revdepcheck::cloud_details(, "NA")` for more info +Run `revdepcheck::cloud_details(, "dibble")` for more info
@@ -690,17 +823,2096 @@ Run `revdepcheck::cloud_details(, "NA")` for more info ``` -# RVA +# DR.SC
-* Version: 0.0.5 -* GitHub: https://github.com/THERMOSTATS/RVA +* Version: 3.4 +* GitHub: https://github.com/feiyoung/DR.SC +* Source code: https://github.com/cran/DR.SC +* Date/Publication: 2024-03-19 08:40:02 UTC +* Number of recursive dependencies: 151 + +Run `revdepcheck::cloud_details(, "DR.SC")` for more info + +
+ +## In both + +* checking whether package ‘DR.SC’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘DR.SC’ ... +** package ‘DR.SC’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c getNB_fast.cpp -o getNB_fast.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job.cpp -o mt_paral_job.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job2.cpp -o mt_paral_job2.o +... +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘DR.SC’ +* removing ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck/DR.SC’ + + +``` +### CRAN + +``` +* installing *source* package ‘DR.SC’ ... +** package ‘DR.SC’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c getNB_fast.cpp -o getNB_fast.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job.cpp -o mt_paral_job.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job2.cpp -o mt_paral_job2.o +... +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘DR.SC’ +* removing ‘/tmp/workdir/DR.SC/old/DR.SC.Rcheck/DR.SC’ + + +``` +# epizootic + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/viralemergence/epizootic +* Source code: https://github.com/cran/epizootic +* Date/Publication: 2024-10-02 13:10:05 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "epizootic")` for more info + +
+ +## In both + +* checking whether package ‘epizootic’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/epizootic/new/epizootic.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘epizootic’ ... +** package ‘epizootic’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c aspatial_siri.cpp -o aspatial_siri.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o epizootic.so RcppExports.o aspatial_siri.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/epizootic/new/epizootic.Rcheck/00LOCK-epizootic/00new/epizootic/libs +** R +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘epizootic’ +* removing ‘/tmp/workdir/epizootic/new/epizootic.Rcheck/epizootic’ + + +``` +### CRAN + +``` +* installing *source* package ‘epizootic’ ... +** package ‘epizootic’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c aspatial_siri.cpp -o aspatial_siri.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o epizootic.so RcppExports.o aspatial_siri.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/epizootic/old/epizootic.Rcheck/00LOCK-epizootic/00new/epizootic/libs +** R +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘epizootic’ +* removing ‘/tmp/workdir/epizootic/old/epizootic.Rcheck/epizootic’ + + +``` +# GeoTox + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/GeoTox +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "GeoTox")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# GseaVis + +
+ +* Version: 0.0.5 +* GitHub: https://github.com/junjunlab/GseaVis +* Source code: https://github.com/cran/GseaVis +* Date/Publication: 2022-12-20 19:40:07 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "GseaVis")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/GseaVis/new/GseaVis.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘GseaVis/DESCRIPTION’ ... OK +... +* this is package ‘GseaVis’ version ‘0.0.5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘DOSE’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/GseaVis/old/GseaVis.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘GseaVis/DESCRIPTION’ ... OK +... +* this is package ‘GseaVis’ version ‘0.0.5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘DOSE’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# hettx + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/bfifield/hettx +* Source code: https://github.com/cran/hettx +* Date/Publication: 2023-08-19 22:22:34 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "hettx")` for more info + +
+ +## In both + +* checking whether package ‘hettx’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/hettx/new/hettx.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘hettx’ ... +** package ‘hettx’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘hettx’ +* removing ‘/tmp/workdir/hettx/new/hettx.Rcheck/hettx’ + + +``` +### CRAN + +``` +* installing *source* package ‘hettx’ ... +** package ‘hettx’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘hettx’ +* removing ‘/tmp/workdir/hettx/old/hettx.Rcheck/hettx’ + + +``` +# immcp + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/YuanlongHu/immcp +* Source code: https://github.com/cran/immcp +* Date/Publication: 2022-05-12 05:50:02 UTC +* Number of recursive dependencies: 187 + +Run `revdepcheck::cloud_details(, "immcp")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/immcp/new/immcp.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘immcp/DESCRIPTION’ ... OK +... +* this is package ‘immcp’ version ‘1.0.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'clusterProfiler', 'DOSE' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/immcp/old/immcp.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘immcp/DESCRIPTION’ ... OK +... +* this is package ‘immcp’ version ‘1.0.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'clusterProfiler', 'DOSE' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# invivoPKfit + +
+ +* Version: 2.0.0 +* GitHub: NA +* Source code: https://github.com/cran/invivoPKfit +* Date/Publication: 2025-01-09 14:30:02 UTC +* Number of recursive dependencies: 172 + +Run `revdepcheck::cloud_details(, "invivoPKfit")` for more info + +
+ +## In both + +* checking whether package ‘invivoPKfit’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/invivoPKfit/new/invivoPKfit.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘invivoPKfit’ ... +** package ‘invivoPKfit’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: object ‘expand1’ is not exported by 'namespace:Matrix' +Execution halted +ERROR: lazy loading failed for package ‘invivoPKfit’ +* removing ‘/tmp/workdir/invivoPKfit/new/invivoPKfit.Rcheck/invivoPKfit’ + + +``` +### CRAN + +``` +* installing *source* package ‘invivoPKfit’ ... +** package ‘invivoPKfit’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: object ‘expand1’ is not exported by 'namespace:Matrix' +Execution halted +ERROR: lazy loading failed for package ‘invivoPKfit’ +* removing ‘/tmp/workdir/invivoPKfit/old/invivoPKfit.Rcheck/invivoPKfit’ + + +``` +# jsmodule + +
+ +* Version: 1.6.1 +* GitHub: https://github.com/jinseob2kim/jsmodule +* Source code: https://github.com/cran/jsmodule +* Date/Publication: 2025-01-08 13:10:02 UTC +* Number of recursive dependencies: 241 + +Run `revdepcheck::cloud_details(, "jsmodule")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/jsmodule/new/jsmodule.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘jsmodule/DESCRIPTION’ ... OK +... +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘jsmodule.Rmd’ using ‘UTF-8’... OK + ‘jsmodule_subgroup_cmprsk.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: OK + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/jsmodule/old/jsmodule.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘jsmodule/DESCRIPTION’ ... OK +... +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘jsmodule.Rmd’ using ‘UTF-8’... OK + ‘jsmodule_subgroup_cmprsk.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: OK + + + + + +``` +# lnmixsurv + +
+ +* Version: 3.1.6 +* GitHub: NA +* Source code: https://github.com/cran/lnmixsurv +* Date/Publication: 2024-09-03 15:20:08 UTC +* Number of recursive dependencies: 195 + +Run `revdepcheck::cloud_details(, "lnmixsurv")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/lnmixsurv/new/lnmixsurv.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘lnmixsurv/DESCRIPTION’ ... OK +... +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘compare.Rmd’ using ‘UTF-8’... OK + ‘expectation_maximization.Rmd’ using ‘UTF-8’... OK + ‘intercept_only.Rmd’ using ‘UTF-8’... OK + ‘lnmixsurv.Rmd’ using ‘UTF-8’... OK + ‘parallel_computation.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 4 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/lnmixsurv/old/lnmixsurv.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘lnmixsurv/DESCRIPTION’ ... OK +... +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘compare.Rmd’ using ‘UTF-8’... OK + ‘expectation_maximization.Rmd’ using ‘UTF-8’... OK + ‘intercept_only.Rmd’ using ‘UTF-8’... OK + ‘lnmixsurv.Rmd’ using ‘UTF-8’... OK + ‘parallel_computation.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 4 NOTEs + + + + + +``` +# lsirm12pl + +
+ +* Version: 1.3.3 +* GitHub: NA +* Source code: https://github.com/cran/lsirm12pl +* Date/Publication: 2024-08-28 23:00:02 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "lsirm12pl")` for more info + +
+ +## In both + +* checking whether package ‘lsirm12pl’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘lsirm12pl’ ... +** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm2pl.cpp -o lsirm2pl.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsm.cpp -o lsm.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c utility_cpp.cpp -o utility_cpp.o +... +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘lsirm12pl’ +* removing ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/lsirm12pl’ + + +``` +### CRAN + +``` +* installing *source* package ‘lsirm12pl’ ... +** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm2pl.cpp -o lsirm2pl.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsm.cpp -o lsm.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c utility_cpp.cpp -o utility_cpp.o +... +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘lsirm12pl’ +* removing ‘/tmp/workdir/lsirm12pl/old/lsirm12pl.Rcheck/lsirm12pl’ + + +``` +# MantaID + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/MantaID +* Number of recursive dependencies: 157 + +Run `revdepcheck::cloud_details(, "MantaID")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# metajam + +
+ +* Version: 0.3.1 +* GitHub: https://github.com/NCEAS/metajam +* Source code: https://github.com/cran/metajam +* Date/Publication: 2024-08-16 17:50:02 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "metajam")` for more info + +
+ +## In both + +* checking whether package ‘metajam’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/metajam/new/metajam.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘metajam’ ... +** package ‘metajam’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘metajam’ +* removing ‘/tmp/workdir/metajam/new/metajam.Rcheck/metajam’ + + +``` +### CRAN + +``` +* installing *source* package ‘metajam’ ... +** package ‘metajam’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘metajam’ +* removing ‘/tmp/workdir/metajam/old/metajam.Rcheck/metajam’ + + +``` +# miWQS + +
+ +* Version: 0.4.4 +* GitHub: https://github.com/phargarten2/miWQS +* Source code: https://github.com/cran/miWQS +* Date/Publication: 2021-04-02 21:50:02 UTC +* Number of recursive dependencies: 151 + +Run `revdepcheck::cloud_details(, "miWQS")` for more info + +
+ +## In both + +* checking whether package ‘miWQS’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘wqs’ + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘miWQS’ ... +** package ‘miWQS’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘miWQS’ +* removing ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/miWQS’ + + +``` +### CRAN + +``` +* installing *source* package ‘miWQS’ ... +** package ‘miWQS’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘miWQS’ +* removing ‘/tmp/workdir/miWQS/old/miWQS.Rcheck/miWQS’ + + +``` +# multinma + +
+ +* Version: 0.7.2 +* GitHub: https://github.com/dmphillippo/multinma +* Source code: https://github.com/cran/multinma +* Date/Publication: 2024-09-16 12:20:02 UTC +* Number of recursive dependencies: 151 + +Run `revdepcheck::cloud_details(, "multinma")` for more info + +
+ +## In both + +* checking whether package ‘multinma’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘multinma’ ... +** package ‘multinma’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_param.o] Error 1 +ERROR: compilation failed for package ‘multinma’ +* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’ + + +``` +### CRAN + +``` +* installing *source* package ‘multinma’ ... +** package ‘multinma’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_param.o] Error 1 +ERROR: compilation failed for package ‘multinma’ +* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’ + + +``` +# nesRdata + +
+ +* Version: 0.3.1 +* GitHub: https://github.com/jsta/nesRdata +* Source code: https://github.com/cran/nesRdata +* Date/Publication: 2020-04-30 17:20:02 UTC +* Number of recursive dependencies: 66 + +Run `revdepcheck::cloud_details(, "nesRdata")` for more info + +
+ +## In both + +* checking whether package ‘nesRdata’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘nesRdata’ ... +** package ‘nesRdata’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘nesRdata’ +* removing ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/nesRdata’ + + +``` +### CRAN + +``` +* installing *source* package ‘nesRdata’ ... +** package ‘nesRdata’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘nesRdata’ +* removing ‘/tmp/workdir/nesRdata/old/nesRdata.Rcheck/nesRdata’ + + +``` +# obliqueRSF + +
+ +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/obliqueRSF +* Date/Publication: 2022-08-28 20:50:02 UTC +* Number of recursive dependencies: 117 + +Run `revdepcheck::cloud_details(, "obliqueRSF")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/obliqueRSF/new/obliqueRSF.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘obliqueRSF/DESCRIPTION’ ... OK +... +* checking for missing documentation entries ... OK +* checking for code/documentation mismatches ... OK +* checking Rd \usage sections ... OK +* checking Rd contents ... OK +* checking for unstated dependencies in examples ... OK +* checking line endings in C/C++/Fortran sources/headers ... OK +* checking compiled code ... OK +* checking examples ... OK +* DONE +Status: OK + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/obliqueRSF/old/obliqueRSF.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘obliqueRSF/DESCRIPTION’ ... OK +... +* checking for missing documentation entries ... OK +* checking for code/documentation mismatches ... OK +* checking Rd \usage sections ... OK +* checking Rd contents ... OK +* checking for unstated dependencies in examples ... OK +* checking line endings in C/C++/Fortran sources/headers ... OK +* checking compiled code ... OK +* checking examples ... OK +* DONE +Status: OK + + + + + +``` +# ontologics + +
+ +* Version: 0.7.4 +* GitHub: https://github.com/luckinet/ontologics +* Source code: https://github.com/cran/ontologics +* Date/Publication: 2025-01-17 16:50:02 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "ontologics")` for more info + +
+ +## In both + +* checking whether package ‘ontologics’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ontologics’ ... +** package ‘ontologics’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘ontologics’ +* removing ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/ontologics’ + + +``` +### CRAN + +``` +* installing *source* package ‘ontologics’ ... +** package ‘ontologics’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘ontologics’ +* removing ‘/tmp/workdir/ontologics/old/ontologics.Rcheck/ontologics’ + + +``` +# OVtool + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/OVtool +* Date/Publication: 2021-11-02 08:10:07 UTC +* Number of recursive dependencies: 156 + +Run `revdepcheck::cloud_details(, "OVtool")` for more info + +
+ +## In both + +* checking whether package ‘OVtool’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘OVtool’ ... +** package ‘OVtool’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘OVtool’ +* removing ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/OVtool’ + + +``` +### CRAN + +``` +* installing *source* package ‘OVtool’ ... +** package ‘OVtool’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘OVtool’ +* removing ‘/tmp/workdir/OVtool/old/OVtool.Rcheck/OVtool’ + + +``` +# pammtools + +
+ +* Version: 0.5.93 +* GitHub: https://github.com/adibender/pammtools +* Source code: https://github.com/cran/pammtools +* Date/Publication: 2024-02-25 10:10:02 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "pammtools")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/pammtools/new/pammtools.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘pammtools/DESCRIPTION’ ... OK +... +* checking data for non-ASCII characters ... OK +* checking LazyData ... OK +* checking data for ASCII and uncompressed saves ... OK +* checking R/sysdata.rda ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* DONE +Status: OK + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/pammtools/old/pammtools.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘pammtools/DESCRIPTION’ ... OK +... +* checking data for non-ASCII characters ... OK +* checking LazyData ... OK +* checking data for ASCII and uncompressed saves ... OK +* checking R/sysdata.rda ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* DONE +Status: OK + + + + + +``` +# pathwayTMB + +
+ +* Version: 0.1.3 +* GitHub: NA +* Source code: https://github.com/cran/pathwayTMB +* Date/Publication: 2022-08-09 13:50:02 UTC +* Number of recursive dependencies: 226 + +Run `revdepcheck::cloud_details(, "pathwayTMB")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/pathwayTMB/new/pathwayTMB.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘pathwayTMB/DESCRIPTION’ ... OK +... +* this is package ‘pathwayTMB’ version ‘0.1.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘clusterProfiler’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/pathwayTMB/old/pathwayTMB.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘pathwayTMB/DESCRIPTION’ ... OK +... +* this is package ‘pathwayTMB’ version ‘0.1.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘clusterProfiler’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# pencal + +
+ +* Version: 2.2.2 +* GitHub: NA +* Source code: https://github.com/cran/pencal +* Date/Publication: 2024-06-12 11:10:02 UTC +* Number of recursive dependencies: 174 + +Run `revdepcheck::cloud_details(, "pencal")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/pencal/new/pencal.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘pencal/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘riskRegression’ + +Package suggested but not available for checking: ‘ptmixed’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/pencal/old/pencal.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘pencal/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘riskRegression’ + +Package suggested but not available for checking: ‘ptmixed’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# quid + +
+ +* Version: 0.0.1 +* GitHub: NA +* Source code: https://github.com/cran/quid +* Date/Publication: 2021-12-09 09:00:02 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "quid")` for more info + +
+ +## In both + +* checking whether package ‘quid’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/quid/new/quid.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘quid’ ... +** package ‘quid’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘quid’ +* removing ‘/tmp/workdir/quid/new/quid.Rcheck/quid’ + + +``` +### CRAN + +``` +* installing *source* package ‘quid’ ... +** package ‘quid’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘quid’ +* removing ‘/tmp/workdir/quid/old/quid.Rcheck/quid’ + + +``` +# rdflib + +
+ +* Version: 0.2.9 +* GitHub: https://github.com/ropensci/rdflib +* Source code: https://github.com/cran/rdflib +* Date/Publication: 2024-08-17 06:00:05 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "rdflib")` for more info + +
+ +## In both + +* checking whether package ‘rdflib’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rdflib’ ... +** package ‘rdflib’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘rdflib’ +* removing ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/rdflib’ + + +``` +### CRAN + +``` +* installing *source* package ‘rdflib’ ... +** package ‘rdflib’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘rdflib’ +* removing ‘/tmp/workdir/rdflib/old/rdflib.Rcheck/rdflib’ + + +``` +# rmlnomogram + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/rmlnomogram +* Number of recursive dependencies: 181 + +Run `revdepcheck::cloud_details(, "rmlnomogram")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# robber + +
+ +* Version: 0.2.4 +* GitHub: https://github.com/Chabert-Liddell/robber +* Source code: https://github.com/cran/robber +* Date/Publication: 2024-02-07 13:50:02 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "robber")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/robber/new/robber.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘robber/DESCRIPTION’ ... OK +... +* checking tests ... OK + Running ‘spelling.R’ + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘topological-analysis.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: OK + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/robber/old/robber.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘robber/DESCRIPTION’ ... OK +... +* checking tests ... OK + Running ‘spelling.R’ + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘topological-analysis.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: OK + + + + + +``` +# rplec + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/rplec +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "rplec")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# RVA + +
+ +* Version: 0.0.5 +* GitHub: https://github.com/THERMOSTATS/RVA * Source code: https://github.com/cran/RVA * Date/Publication: 2021-11-01 21:40:02 UTC -* Number of recursive dependencies: 208 +* Number of recursive dependencies: 210 + +Run `revdepcheck::cloud_details(, "RVA")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘RVA/DESCRIPTION’ ... OK +... +* this is package ‘RVA’ version ‘0.0.5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘clusterProfiler’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘RVA/DESCRIPTION’ ... OK +... +* this is package ‘RVA’ version ‘0.0.5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘clusterProfiler’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# scCustomize + +
+ +* Version: 3.0.1 +* GitHub: https://github.com/samuel-marsh/scCustomize +* Source code: https://github.com/cran/scCustomize +* Date/Publication: 2024-12-18 18:40:02 UTC +* Number of recursive dependencies: 272 + +Run `revdepcheck::cloud_details(, "scCustomize")` for more info + +
+ +## In both + +* checking whether package ‘scCustomize’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘Nebulosa’ + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘scCustomize’ ... +** package ‘scCustomize’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘scCustomize’ +* removing ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/scCustomize’ + + +``` +### CRAN + +``` +* installing *source* package ‘scCustomize’ ... +** package ‘scCustomize’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘scCustomize’ +* removing ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck/scCustomize’ + + +``` +# scpi + +
+ +* Version: 2.2.6 +* GitHub: NA +* Source code: https://github.com/cran/scpi +* Date/Publication: 2024-11-11 23:40:02 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "scpi")` for more info + +
+ +## In both + +* checking whether package ‘scpi’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/scpi/new/scpi.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘scpi’ ... +** package ‘scpi’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Warning in .recacheSubclasses(def@className, def, env) : + undefined subclass "pcorMatrix" of class "ConstVal"; definition not updated +Warning in .recacheSubclasses(def@className, def, env) : +... +Warning in .recacheSubclasses(def@className, def, env) : + undefined subclass "pcorMatrix" of class "ConstValORExpr"; definition not updated +Warning in .recacheSubclasses(def@className, def, env) : + undefined subclass "pcorMatrix" of class "ConstValORNULL"; definition not updated +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scpi’ +* removing ‘/tmp/workdir/scpi/new/scpi.Rcheck/scpi’ + + +``` +### CRAN + +``` +* installing *source* package ‘scpi’ ... +** package ‘scpi’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Warning in .recacheSubclasses(def@className, def, env) : + undefined subclass "pcorMatrix" of class "ConstVal"; definition not updated +Warning in .recacheSubclasses(def@className, def, env) : +... +Warning in .recacheSubclasses(def@className, def, env) : + undefined subclass "pcorMatrix" of class "ConstValORExpr"; definition not updated +Warning in .recacheSubclasses(def@className, def, env) : + undefined subclass "pcorMatrix" of class "ConstValORNULL"; definition not updated +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘scpi’ +* removing ‘/tmp/workdir/scpi/old/scpi.Rcheck/scpi’ + + +``` +# SCpubr + +
+ +* Version: 2.0.2 +* GitHub: https://github.com/enblacar/SCpubr +* Source code: https://github.com/cran/SCpubr +* Date/Publication: 2023-10-11 09:50:02 UTC +* Number of recursive dependencies: 301 + +Run `revdepcheck::cloud_details(, "SCpubr")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/SCpubr/new/SCpubr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SCpubr/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘reference_manual.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 2 NOTEs + + + + + +``` +### CRAN -Run `revdepcheck::cloud_details(, "RVA")` for more info +``` +* using log directory ‘/tmp/workdir/SCpubr/old/SCpubr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SCpubr/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘reference_manual.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 2 NOTEs + + + + + +``` +# SEERaBomb + +
+ +* Version: 2019.2 +* GitHub: NA +* Source code: https://github.com/cran/SEERaBomb +* Date/Publication: 2019-12-12 18:50:03 UTC +* Number of recursive dependencies: 185 + +Run `revdepcheck::cloud_details(, "SEERaBomb")` for more info + +
+ +## In both + +* checking whether package ‘SEERaBomb’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/SEERaBomb/new/SEERaBomb.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘SEERaBomb’ ... +** package ‘SEERaBomb’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c SEERaBomb_init.c -o SEERaBomb_init.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c fillPYM.cpp -o fillPYM.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SEERaBomb.so RcppExports.o SEERaBomb_init.o fillPYM.o -L/opt/R/4.3.1/lib/R/lib -lR +... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘demography’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘SEERaBomb’ +* removing ‘/tmp/workdir/SEERaBomb/new/SEERaBomb.Rcheck/SEERaBomb’ + + +``` +### CRAN + +``` +* installing *source* package ‘SEERaBomb’ ... +** package ‘SEERaBomb’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c SEERaBomb_init.c -o SEERaBomb_init.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c fillPYM.cpp -o fillPYM.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SEERaBomb.so RcppExports.o SEERaBomb_init.o fillPYM.o -L/opt/R/4.3.1/lib/R/lib -lR +... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘demography’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘SEERaBomb’ +* removing ‘/tmp/workdir/SEERaBomb/old/SEERaBomb.Rcheck/SEERaBomb’ + + +``` +# SensIAT + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/SensIAT +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "SensIAT")` for more info
@@ -709,13 +2921,128 @@ Run `revdepcheck::cloud_details(, "RVA")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’ -* using R version 4.1.1 (2021-08-10) + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# SimplyAgree + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/arcaldwell49/SimplyAgree +* Source code: https://github.com/cran/SimplyAgree +* Date/Publication: 2024-03-21 14:20:06 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "SimplyAgree")` for more info + +
+ +## In both + +* checking whether package ‘SimplyAgree’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘SimplyAgree’ ... +** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SimplyAgree’ +* removing ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/SimplyAgree’ + + +``` +### CRAN + +``` +* installing *source* package ‘SimplyAgree’ ... +** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SimplyAgree’ +* removing ‘/tmp/workdir/SimplyAgree/old/SimplyAgree.Rcheck/SimplyAgree’ + + +``` +# ssdGSA + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/ssdGSA +* Date/Publication: 2024-07-26 23:10:02 UTC +* Number of recursive dependencies: 174 + +Run `revdepcheck::cloud_details(, "ssdGSA")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/ssdGSA/new/ssdGSA.Rcheck’ +* using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘RVA/DESCRIPTION’ ... OK -* this is package ‘RVA’ version ‘0.0.5’ +* checking for file ‘ssdGSA/DESCRIPTION’ ... OK +... +* this is package ‘ssdGSA’ version ‘0.1.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR @@ -734,13 +3061,18 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’ -* using R version 4.1.1 (2021-08-10) +* using log directory ‘/tmp/workdir/ssdGSA/old/ssdGSA.Rcheck’ +* using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘RVA/DESCRIPTION’ ... OK -* this is package ‘RVA’ version ‘0.0.5’ +* checking for file ‘ssdGSA/DESCRIPTION’ ... OK +... +* this is package ‘ssdGSA’ version ‘0.1.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR @@ -756,16 +3088,17 @@ Status: 1 ERROR ``` -# NA +# SSHAARP
-* Version: NA +* Version: 2.0.5 * GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 +* Source code: https://github.com/cran/SSHAARP +* Date/Publication: 2024-12-11 07:50:06 UTC +* Number of recursive dependencies: 123 -Run `revdepcheck::cloud_details(, "NA")` for more info +Run `revdepcheck::cloud_details(, "SSHAARP")` for more info
@@ -774,20 +3107,302 @@ Run `revdepcheck::cloud_details(, "NA")` for more info ### Devel ``` +* using log directory ‘/tmp/workdir/SSHAARP/new/SSHAARP.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SSHAARP/DESCRIPTION’ ... OK +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘vignette.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: OK + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/SSHAARP/old/SSHAARP.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SSHAARP/DESCRIPTION’ ... OK +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘vignette.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: OK + + + + + +``` +# stabiliser + +
+ +* Version: 1.0.6 +* GitHub: NA +* Source code: https://github.com/cran/stabiliser +* Date/Publication: 2023-05-17 11:00:05 UTC +* Number of recursive dependencies: 151 + +Run `revdepcheck::cloud_details(, "stabiliser")` for more info + +
+ +## In both + +* checking whether package ‘stabiliser’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/stabiliser/new/stabiliser.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘stabiliser’ ... +** package ‘stabiliser’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called ‘maditr’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: lazy loading failed for package ‘stabiliser’ +* removing ‘/tmp/workdir/stabiliser/new/stabiliser.Rcheck/stabiliser’ + + +``` +### CRAN + +``` +* installing *source* package ‘stabiliser’ ... +** package ‘stabiliser’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called ‘maditr’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: lazy loading failed for package ‘stabiliser’ +* removing ‘/tmp/workdir/stabiliser/old/stabiliser.Rcheck/stabiliser’ + + +``` +# tidyseurat + +
+ +* Version: 0.8.0 +* GitHub: https://github.com/stemangiola/tidyseurat +* Source code: https://github.com/cran/tidyseurat +* Date/Publication: 2024-01-10 04:50:02 UTC +* Number of recursive dependencies: 196 + +Run `revdepcheck::cloud_details(, "tidyseurat")` for more info + +
+ +## In both + +* checking whether package ‘tidyseurat’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘tidyseurat’ ... +** package ‘tidyseurat’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘tidyseurat’ +* removing ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/tidyseurat’ + + +``` +### CRAN + +``` +* installing *source* package ‘tidyseurat’ ... +** package ‘tidyseurat’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘tidyseurat’ +* removing ‘/tmp/workdir/tidyseurat/old/tidyseurat.Rcheck/tidyseurat’ + + +``` +# TriDimRegression + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/alexander-pastukhov/tridim-regression +* Source code: https://github.com/cran/TriDimRegression +* Date/Publication: 2023-09-13 14:10:03 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "TriDimRegression")` for more info + +
+ +## In both +* checking whether package ‘TriDimRegression’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘TriDimRegression’ ... +** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘TriDimRegression’ +* removing ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/TriDimRegression’ ``` ### CRAN ``` +* installing *source* package ‘TriDimRegression’ ... +** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘TriDimRegression’ +* removing ‘/tmp/workdir/TriDimRegression/old/TriDimRegression.Rcheck/TriDimRegression’ + + +``` +# WRTDStidal + +
+ +* Version: 1.1.4 +* GitHub: https://github.com/fawda123/WRTDStidal +* Source code: https://github.com/cran/WRTDStidal +* Date/Publication: 2023-10-20 09:00:11 UTC +* Number of recursive dependencies: 139 + +Run `revdepcheck::cloud_details(, "WRTDStidal")` for more info + +
+## In both + +* checking whether package ‘WRTDStidal’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/WRTDStidal/new/WRTDStidal.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘WRTDStidal’ ... +** package ‘WRTDStidal’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘WRTDStidal’ +* removing ‘/tmp/workdir/WRTDStidal/new/WRTDStidal.Rcheck/WRTDStidal’ +``` +### CRAN +``` +* installing *source* package ‘WRTDStidal’ ... +** package ‘WRTDStidal’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘WRTDStidal’ +* removing ‘/tmp/workdir/WRTDStidal/old/WRTDStidal.Rcheck/WRTDStidal’ ``` diff --git a/revdep/problems.md b/revdep/problems.md index 67221669..e12d244c 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,103 +1,75 @@ -# ast2ast +# meta
-* Version: 0.2.1 -* GitHub: https://github.com/Konrad1991/ast2ast -* Source code: https://github.com/cran/ast2ast -* Date/Publication: 2022-10-19 07:25:07 UTC -* Number of recursive dependencies: 76 +* Version: 8.0-2 +* GitHub: https://github.com/guido-s/meta +* Source code: https://github.com/cran/meta +* Date/Publication: 2025-01-21 19:20:02 UTC +* Number of recursive dependencies: 96 -Run `revdepcheck::cloud_details(, "ast2ast")` for more info +Run `revdepcheck::cloud_details(, "meta")` for more info
## Newly broken -* checking tests ... ERROR +* checking installed package size ... NOTE ``` - Running ‘tinytest.R’ - Running the tests in ‘tests/tinytest.R’ failed. - Complete output: - > if ( requireNamespace("tinytest", quietly=TRUE) ){ - + tinytest::test_package("ast2ast") - + } - - test_all.R.................... 0 tests - test_all.R.................... 0 tests - test_all.R.................... 0 tests - test_all.R.................... 0 tests Error: C stack usage 9962948 is too close to the limit - Execution halted + installed size is 5.6Mb + sub-directories of 1Mb or more: + R 3.5Mb + help 1.5Mb ``` -# openalexR +## In both + +* checking Rd cross-references ... NOTE + ``` + Packages unavailable to check Rd xrefs: ‘metasens’, ‘robumeta’ + ``` + +# waywiser
-* Version: 1.0.0 -* GitHub: https://github.com/massimoaria/openalexR -* Source code: https://github.com/cran/openalexR -* Date/Publication: 2022-10-06 10:40:02 UTC -* Number of recursive dependencies: 78 +* Version: 0.6.0 +* GitHub: https://github.com/ropensci/waywiser +* Source code: https://github.com/cran/waywiser +* Date/Publication: 2024-06-27 19:10:03 UTC +* Number of recursive dependencies: 172 -Run `revdepcheck::cloud_details(, "openalexR")` for more info +Run `revdepcheck::cloud_details(, "waywiser")` for more info
## Newly broken -* checking re-building of vignette outputs ... WARNING +* checking running R code from vignettes ... ERROR ``` - Error(s) in re-building vignettes: + Errors in running code in vignettes: + when running code in ‘multi-scale-assessment.Rmd’ ... - --- re-building ‘A_Brief_Introduction_to_openalexR.Rmd’ using rmarkdown - Quitting from lines 237-251 (A_Brief_Introduction_to_openalexR.Rmd) - Error: processing vignette 'A_Brief_Introduction_to_openalexR.Rmd' failed with diagnostics: - $ operator is invalid for atomic vectors - --- failed re-building ‘A_Brief_Introduction_to_openalexR.Rmd’ + | + |================= | 25% + | + |================== | 25%Warning in unzip(file_loc, exdir = tmp) : + error 1 in extracting from zip file + Cannot open layer tl_2022_us_county - SUMMARY: processing the following file failed: - ‘A_Brief_Introduction_to_openalexR.Rmd’ - - Error: Vignette re-building failed. + When sourcing ‘multi-scale-assessment.R’: + Error: Opening layer failed. Execution halted + + ‘multi-scale-assessment.Rmd’ using ‘UTF-8’... failed + ‘residual-autocorrelation.Rmd’ using ‘UTF-8’... OK + ‘waywiser.Rmd’ using ‘UTF-8’... OK ``` -# rearrr - -
- -* Version: 0.3.2 -* GitHub: https://github.com/ludvigolsen/rearrr -* Source code: https://github.com/cran/rearrr -* Date/Publication: 2022-11-24 09:40:02 UTC -* Number of recursive dependencies: 74 - -Run `revdepcheck::cloud_details(, "rearrr")` for more info - -
- -## Newly broken +## In both -* checking tests ... ERROR +* checking data for non-ASCII characters ... NOTE ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - xpectr::strip(side_effects_16117[["error_class"]]) not equal to xpectr::strip(c(purrr_error, "error", "condition")). - Lengths differ: 4 is not 3 - ── Failure ('test_swirl_3d.R:1554'): fuzz testing swirl_3d() ─────────────────── - xpectr::strip(side_effects_19735[["error_class"]]) not equal to xpectr::strip(c(purrr_error, "error", "condition")). - Lengths differ: 4 is not 3 - ── Failure ('test_swirl_3d.R:1584'): fuzz testing swirl_3d() ─────────────────── - xpectr::strip(side_effects_19575[["error_class"]]) not equal to xpectr::strip(c(purrr_error, "error", "condition")). - Lengths differ: 4 is not 3 - ── Failure ('test_swirl_3d.R:1988'): fuzz testing swirl_3d() ─────────────────── - xpectr::strip(side_effects_10389[["error_class"]]) not equal to xpectr::strip(c(purrr_error, "error", "condition")). - Lengths differ: 4 is not 3 - - [ FAIL 78 | WARN 0 | SKIP 0 | PASS 7265 ] - Error: Test failures - Execution halted + Note: found 1 marked UTF-8 string ``` From 7823922b246cd79a9339d481213645b01569f8bc Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Tue, 28 Jan 2025 08:29:29 -0600 Subject: [PATCH 6/8] Increment version number to 1.0.3 --- DESCRIPTION | 2 +- NEWS.md | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index cec9d529..d12d8c35 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: purrr Title: Functional Programming Tools -Version: 1.0.2.9000 +Version: 1.0.3 Authors@R: c( person("Hadley", "Wickham", , "hadley@posit.co", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-4757-117X")), diff --git a/NEWS.md b/NEWS.md index 4257adb1..b32844f5 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# purrr (development version) +# purrr 1.0.3 * Varies fixed to bring purrr back into compliance with R CMD check (@shikokuchuo, @jayhesselberth). From 19ef2775ae3dadea1098d0bc672817ab3bac0e98 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Tue, 28 Jan 2025 08:29:35 -0600 Subject: [PATCH 7/8] Increment version number to 1.0.4 --- DESCRIPTION | 2 +- NEWS.md | 2 ++ 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index d12d8c35..2e44c0d0 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: purrr Title: Functional Programming Tools -Version: 1.0.3 +Version: 1.0.4 Authors@R: c( person("Hadley", "Wickham", , "hadley@posit.co", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-4757-117X")), diff --git a/NEWS.md b/NEWS.md index b32844f5..53d22d29 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,5 @@ +# purrr 1.0.4 + # purrr 1.0.3 * Varies fixed to bring purrr back into compliance with R CMD check (@shikokuchuo, @jayhesselberth). From baa4cd41471fcec7f275d538ba503f31f8547588 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Wed, 5 Feb 2025 15:54:42 -0600 Subject: [PATCH 8/8] Increment version number to 1.0.4.9000 --- DESCRIPTION | 2 +- NEWS.md | 2 ++ 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 2e44c0d0..393014bd 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: purrr Title: Functional Programming Tools -Version: 1.0.4 +Version: 1.0.4.9000 Authors@R: c( person("Hadley", "Wickham", , "hadley@posit.co", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-4757-117X")), diff --git a/NEWS.md b/NEWS.md index 53d22d29..a224caa1 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,5 @@ +# purrr (development version) + # purrr 1.0.4 # purrr 1.0.3