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Error in `SCE2AnnData()` if row/col data is empty #105

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lazappi opened this issue Dec 8, 2023 · 0 comments

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lazappi commented Dec 8, 2023

Conversion error if these slots are empty.

counts <- matrix(rpois(100 * 50, 4), nrow = 100, ncol = 50)

sce <- SingleCellExperiment::SingleCellExperiment(
    assays = list(counts = counts)
)

adata <- zellkonverter::SCE2AnnData(sce, X_name = "counts")
#> Error in py_call_impl(callable, call_args$unnamed, call_args$named) : 
#>  ValueError: Observations annot. `obs` must have as many rows as `X` has rows (50), but has 0 rows.

lazappi added the bug label

lazappi closed this as completed in

7954b4a

lazappi added a commit that referenced this issue


          Fix handling of missing rowData/colData

03ab944

Fixes #105

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