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The merscope reader-function requires parquet-formatted data for the "cell_boundaries" input, but 16 out of the 17 merscope databases contain purely hdf5-formatted files in their cell_boundaries subfolder.
For reference, the only merscope without this issue is "ush6c__MERSCOPE__HumanUterineCancerPatient2-RACostain", which does have a .parquet cell_boundaries file in the main directory. This db also happens to be the only one with the cell_boundaries data situated in its main directory and not in a subfolder in the main directory.
The text was updated successfully, but these errors were encountered:
It would be nice to have this functionality available in spatialdata-io, if any of you end up using the code from Can Ergen I can put you two in contact via Zulip and coordinate a joint PR.
The merscope reader-function requires parquet-formatted data for the "cell_boundaries" input, but 16 out of the 17 merscope databases contain purely hdf5-formatted files in their cell_boundaries subfolder.
For reference, the only merscope without this issue is "ush6c__MERSCOPE__HumanUterineCancerPatient2-RACostain", which does have a .parquet cell_boundaries file in the main directory. This db also happens to be the only one with the cell_boundaries data situated in its main directory and not in a subfolder in the main directory.
The text was updated successfully, but these errors were encountered: