diff --git a/_data/single-cell-transformers.yml b/_data/single-cell-transformers.yml index 3c6b568..6e6c2c5 100644 --- a/_data/single-cell-transformers.yml +++ b/_data/single-cell-transformers.yml @@ -1,3 +1,18 @@ +- model: mcBERT + paper: + type: preprint + text: '[von Querfurth et al. 2024](https://doi.org/10.1101/2024.11.04.621897)' + url: https://doi.org/10.1101/2024.11.04.621897 + code: + type: reproducible + text: "[ð\x9F\x9B\_ï¸\x8FGithub](https://github.com/COMSYS/mcBERT)" + url: https://github.com/COMSYS/mcBERT + omic_modalities: scRNA-seq + pre_training_dataset: 7M cells single tissue, human (see Table 1 in the paper; heart, kidney, PBMC, and lung) + input_embedding: Cells as tokens + value projection + architecture: Transformer Encoder / BERT + ssl_tasks: MLM on cell-level, based on unmasked cells of patient + supervised_tasks: Phenotype classification - model: CancerFoundation paper: type: preprint