How to explore the differentiation relationships between samples from 2 different tissues?

[denvercal1234GitHub]

Hi there,

Thanks for the package.

Related to #877, I have samples from 2 different tissues. I concatenated the loom objects for the first tissue and merged it with the corresponding clustering done in Seurat (#1047). I did the same independently for the samples coming from the other tissue.

Would you mind giving me some pointers to how I might explore the potential differentiation relationships among the clusters between these 2 tissues in RNA Velocity? Or, is there other tools more appropriate for this purpose?

Thank you for your help!