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I have a gene list from top_genes and I want to show these gene names in the heatmap made by scv.pl.heatmap, like this figure. I wonder if there are some arguments or codes to do this?
Besides, I wonder if there are some methods to sort top_genes by latent_time and export it as a list?
the top_genes object was made by the following code: top_genes = adata.var['fit_likelihood'].sort_values(ascending=False).index[:300]
This discussion was converted from issue #1004 on February 21, 2023 10:07.
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Hi, Thanks for your wonderful software!
I have a gene list from
top_genesand I want to show these gene names in the heatmap made by scv.pl.heatmap, like this figure. I wonder if there are some arguments or codes to do this?Besides, I wonder if there are some methods to sort
top_genesbylatent_timeand export it as a list?the
top_genesobject was made by the following code:top_genes = adata.var['fit_likelihood'].sort_values(ascending=False).index[:300]Weifeng
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