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Incosistent usage of adata.copy() argument in integration.py #417

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vondoRishi opened this issue Sep 5, 2024 · 0 comments
Open

Incosistent usage of adata.copy() argument in integration.py #417

vondoRishi opened this issue Sep 5, 2024 · 0 comments

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@vondoRishi
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For scanorama, scgen , mnn , saucie, saucie and desc; a new AnnData object is returned and the adata remains untouched.
Whereas for other methods the original adata updated and returned. This may be happening due to inconsistent use of adata.copy().

Overall unaware user may lead to wrong conclusion.
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@vondoRishi