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Issues list

Questions on batch removal tutorial
#58 opened Nov 16, 2021 by Pazuzzilla updated Mar 24, 2022
Questions about building predictive models
#67 opened Apr 26, 2022 by GA-1101 updated Apr 26, 2022
Questions about drug perturbation prediction using cell line data
#68 opened Apr 27, 2022 by GA-1101 updated Apr 28, 2022
labels_key mismatch in scgen.SCGEN.setup_anndata()
#69 opened May 6, 2022 by johnjeang updated May 6, 2022
Inconsistent batch removal when loading saved scGEN model
#71 opened Jun 19, 2022 by TemiLeke updated Jun 19, 2022
Unequal size of perturbated size
#72 opened Sep 12, 2022 by XinyeZhao updated Sep 12, 2022
Accurate requirements to setup the environment on Windows
#81 opened May 11, 2023 by pbilinskyi updated May 11, 2023
Update depreciated AnnData.concatenate
#82 opened Jun 21, 2023 by quentinblampey updated Jul 19, 2023
Question about get_decoded_expression() and predict() functions
#85 opened Aug 14, 2023 by znavidi updated Aug 14, 2023
How to use data with categories unseen by a trained model
#74 opened Oct 7, 2022 by majpark21 updated Oct 1, 2023
difference between SCGEN and SCGENVAE
#89 opened Oct 8, 2023 by huawen-poppy updated Oct 8, 2023
scgen Literal deprecation error
#88 opened Oct 5, 2023 by abuchin updated Oct 17, 2023
Errors while reading salmonella h5ad files
#70 opened May 7, 2022 by bitcometz updated Nov 15, 2023
How to reproduce paper results
#80 opened May 6, 2023 by SZ-qing updated Nov 16, 2023
get_marginal_ll not implemented for perturbation example model
#93 opened Jun 6, 2024 by ajaynadig updated Jun 6, 2024
Restarting model training from a saved checkpoint.
#96 opened Jul 18, 2024 by ediriwas updated Jul 18, 2024
Tutorial example not working
#99 opened Sep 15, 2024 by thebeancounter updated Sep 15, 2024
idea/question (estimating gene mutation)
#100 opened Oct 7, 2024 by muntajihad updated Oct 7, 2024
dependencies update required
#97 opened Aug 1, 2024 by janursa updated Oct 14, 2024
ProTip! Updated in the last three days: updated:>2025-02-25.