From 9936a1b3c2ecccf9e5835e32ddc33e6d12551792 Mon Sep 17 00:00:00 2001 From: Ignacio Ibarra Date: Tue, 27 Aug 2024 02:16:43 +0200 Subject: [PATCH 1/2] scipy 1.13.1 for csc_matrix --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 6cacf95..e426f6b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -24,7 +24,7 @@ version = "0.2.2" requires-python = ">=3.9" # for GPU-rapids license = {file = "LICENSE"} readme = "README.md" -dependencies = ["seaborn", "scikit-learn", "pandas", "unidecode", "matplotlib", "scipy", "numpy>=1.22", "torch", +dependencies = ["seaborn", "scikit-learn", "pandas", "unidecode", "matplotlib", "scipy==1.13.1", "numpy>=1.22", "torch", "logomaker", "biopython", "numba", "pytest", "pytest-cov", "openpyxl", "tqdm", "scanpy"] [project.optional-dependencies] From 2d2316da621cbf16fa46eb271265b7ee1fc8ac0c Mon Sep 17 00:00:00 2001 From: Ignacio Ibarra Date: Tue, 27 Aug 2024 02:22:06 +0200 Subject: [PATCH 2/2] remove pkg_resources from test --- tests/test_basic.py | 5 ----- 1 file changed, 5 deletions(-) diff --git a/tests/test_basic.py b/tests/test_basic.py index a34f970..6295513 100644 --- a/tests/test_basic.py +++ b/tests/test_basic.py @@ -6,11 +6,6 @@ import mubind as mb # check installed packages -import pkg_resources -installed_packages = pkg_resources.working_set -for package in installed_packages: - print(f"{package.key}=={package.version}") - def test_simdata_train(): import warnings