diff --git a/README.md b/README.md index ae20be4..df17c17 100644 --- a/README.md +++ b/README.md @@ -2,17 +2,17 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2023-11-21 12:08:04 UTC +2023-11-22 12:07:34 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 519 | 15 | 46 | 107 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6888355811) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6888355832) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6888355813) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6888355815) | 544845 | | [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 519 | 15 | 46 | 107 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 271 | 7 | 7 | 35 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6923841301) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6923892678) | c11a86 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 271 | 7 | 7 | 35 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6804858246) | c4983d | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 272 | 7 | 7 | 35 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6923841301) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6923892678) | c11a86 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 272 | 7 | 7 | 35 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6804858246) | c4983d | | [theislab/scib](https://github.com/theislab/scib) | 242 | 17 | 29 | 49 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) | ed3e28 | | [theislab/scgen](https://github.com/theislab/scgen) | 234 | 10 | 20 | 51 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6937339075) | 55bcbb | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6951034287) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6833382250) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6833382248) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6833382247) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6833382245) | b06bf3 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 108 | 6 | 15 | 22 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/6848353013) | a36390 | @@ -21,18 +21,18 @@ GitHub Dashboard | [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 22 | 11 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | | [theislab/moscot](https://github.com/theislab/moscot) | 72 | 4 | 36 | 6 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/6941564103) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/6941564110) | 85cc0f | | [theislab/moscot](https://github.com/theislab/moscot) | 72 | 4 | 36 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456571831) | b23360 | -| [theislab/destiny](https://github.com/theislab/destiny) | 65 | 5 | 29 | 11 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) | 8f083f | +| [theislab/destiny](https://github.com/theislab/destiny) | 65 | 5 | 30 | 11 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) | 8f083f | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 59 | 5 | 41 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 59 | 5 | 41 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6942111260) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6942111253) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6942111264) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6942112031) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6942112912) | c16c30 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 59 | 4 | 25 | 12 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 59 | 4 | 25 | 12 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6942958662) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6942958665) [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6942958663) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6942958660) | 783d62 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 59 | 4 | 25 | 12 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) | d00c5f | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 59 | 5 | 41 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6955656126) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6955656122) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6955656113) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6955656118) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6955656115) | f63277 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 59 | 4 | 27 | 13 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 59 | 4 | 27 | 13 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6942958662) | 783d62 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 59 | 4 | 27 | 13 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) | d00c5f | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 42 | 7 | 14 | 26 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Labeler/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3209792663) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3213182368) | e78395 | | [theislab/spapros](https://github.com/theislab/spapros) | 20 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088652) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088648) | 642fb3 | -| [theislab/spapros](https://github.com/theislab/spapros) | 20 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6937996861) | c4c090 | +| [theislab/spapros](https://github.com/theislab/spapros) | 20 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6951665654) | c4c090 | | [theislab/geome](https://github.com/theislab/geome) | 13 | 3 | 5 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | | [theislab/hadge](https://github.com/theislab/hadge) | 13 | 3 | 2 | 3 | [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/6906492902) | 0497ee | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/6942907174) | a9d514 | @@ -41,7 +41,7 @@ GitHub Dashboard | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 4 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) | cb7707 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 3 | 0 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) | 96c815 | | [theislab/bindome](https://github.com/theislab/bindome) | 1 | 3 | 5 | 1 | [![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) | 3cb12b | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6943474784) | 59dde4 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6956979307) | 0a1506 | | [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | | [theislab/ehrdata](https://github.com/theislab/ehrdata) | 0 | 1 | 1 | 0 | [![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/6936173366) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/6936173370) | db3cf5 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | @@ -52,12 +52,12 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1201 | 30 | 19 | 430 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1201 | 30 | 19 | 429 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 363 | 14 | 84 | 99 | | [theislab/scarches](https://github.com/theislab/scarches) | 290 | 14 | 34 | 46 | | [theislab/dca](https://github.com/theislab/dca) | 224 | 11 | 31 | 67 | | [theislab/paga](https://github.com/theislab/paga) | 173 | 10 | 21 | 29 | -| [theislab/diffxpy](https://github.com/theislab/diffxpy) | 169 | 7 | 106 | 22 | +| [theislab/diffxpy](https://github.com/theislab/diffxpy) | 168 | 7 | 106 | 22 | | [theislab/kBET](https://github.com/theislab/kBET) | 138 | 9 | 8 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 121 | 9 | 10 | 21 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 113 | 6 | 6 | 9 | @@ -68,7 +68,7 @@ GitHub Dashboard | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 44 | 6 | 2 | 11 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 42 | 9 | 0 | 23 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 40 | 7 | 0 | 6 | -| [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 36 | 9 | 3 | 7 | +| [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 37 | 9 | 3 | 7 | | [theislab/scArches-reproducibility](https://github.com/theislab/scArches-reproducibility) | 29 | 5 | 5 | 2 | | [theislab/deepflow](https://github.com/theislab/deepflow) | 28 | 5 | 1 | 14 | | [theislab/DeepRT](https://github.com/theislab/DeepRT) | 26 | 2 | 11 | 10 | @@ -95,7 +95,7 @@ GitHub Dashboard | [theislab/ncem_tutorials](https://github.com/theislab/ncem_tutorials) | 9 | 4 | 5 | 0 | | [theislab/superexacttestpy](https://github.com/theislab/superexacttestpy) | 9 | 2 | 3 | 0 | | [theislab/trvaep](https://github.com/theislab/trvaep) | 9 | 3 | 0 | 4 | -| [theislab/cross_system_integration](https://github.com/theislab/cross_system_integration) | 8 | 1 | 11 | 0 | +| [theislab/cross_system_integration](https://github.com/theislab/cross_system_integration) | 8 | 1 | 10 | 0 | | [theislab/expiMap_reproducibility](https://github.com/theislab/expiMap_reproducibility) | 8 | 5 | 3 | 4 | | [theislab/greatpy](https://github.com/theislab/greatpy) | 8 | 3 | 4 | 0 | | [theislab/inVAE](https://github.com/theislab/inVAE) | 8 | 2 | 0 | 1 | @@ -103,7 +103,7 @@ GitHub Dashboard | [theislab/PathReg](https://github.com/theislab/PathReg) | 8 | 3 | 0 | 0 | | [theislab/squidpy_reproducibility](https://github.com/theislab/squidpy_reproducibility) | 8 | 2 | 0 | 5 | | [theislab/tissue_tensorflow](https://github.com/theislab/tissue_tensorflow) | 8 | 3 | 0 | 0 | -| [theislab/2019_Strunz](https://github.com/theislab/2019_Strunz) | 7 | 5 | 2 | 10 | +| [theislab/2019_Strunz](https://github.com/theislab/2019_Strunz) | 7 | 5 | 1 | 10 | | [theislab/cpa-reproducibility](https://github.com/theislab/cpa-reproducibility) | 7 | 3 | 0 | 1 | | [theislab/gastrulation_analysis](https://github.com/theislab/gastrulation_analysis) | 7 | 4 | 0 | 1 | | [theislab/scachepy](https://github.com/theislab/scachepy) | 7 | 5 | 3 | 1 | @@ -123,19 +123,20 @@ GitHub Dashboard | [theislab/sc-best-practices-ce](https://github.com/theislab/sc-best-practices-ce) | 5 | 7 | 2 | 3 | | [theislab/scanpy-demo-czbiohub](https://github.com/theislab/scanpy-demo-czbiohub) | 5 | 5 | 0 | 4 | | [theislab/scatac_poisson_reproducibility](https://github.com/theislab/scatac_poisson_reproducibility) | 5 | 3 | 0 | 0 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 5 | 1 | 0 | 2 | | [theislab/cellrank_reproducibility_preprint](https://github.com/theislab/cellrank_reproducibility_preprint) | 4 | 2 | 0 | 0 | -| [theislab/ehrapy-tutorials](https://github.com/theislab/ehrapy-tutorials) | 4 | 2 | 3 | 2 | +| [theislab/ehrapy-tutorials](https://github.com/theislab/ehrapy-tutorials) | 4 | 3 | 1 | 2 | | [theislab/extended-single-cell-best-practices-container](https://github.com/theislab/extended-single-cell-best-practices-container) | 4 | 4 | 2 | 1 | | [theislab/feature-attribution-sc](https://github.com/theislab/feature-attribution-sc) | 4 | 2 | 8 | 1 | | [theislab/LODE](https://github.com/theislab/LODE) | 4 | 2 | 9 | 0 | | [theislab/neural_organoid_atlas](https://github.com/theislab/neural_organoid_atlas) | 4 | 2 | 0 | 1 | -| [theislab/pertpy-tutorials](https://github.com/theislab/pertpy-tutorials) | 4 | 4 | 3 | 6 | +| [theislab/pertpy-tutorials](https://github.com/theislab/pertpy-tutorials) | 4 | 4 | 4 | 6 | | [theislab/covid-perturbation](https://github.com/theislab/covid-perturbation) | 3 | 3 | 0 | 0 | +| [theislab/flowVI](https://github.com/theislab/flowVI) | 3 | 1 | 0 | 0 | | [theislab/multires-consensus-clustering](https://github.com/theislab/multires-consensus-clustering) | 3 | 4 | 9 | 0 | | [theislab/nbconvertR](https://github.com/theislab/nbconvertR) | 3 | 3 | 1 | 2 | | [theislab/pancreatic-endocrinogenesis](https://github.com/theislab/pancreatic-endocrinogenesis) | 3 | 3 | 0 | 5 | | [theislab/sc_analysis_template](https://github.com/theislab/sc_analysis_template) | 3 | 3 | 0 | 0 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 3 | 1 | 0 | 2 | | [theislab/singlecell_proteomics](https://github.com/theislab/singlecell_proteomics) | 3 | 4 | 4 | 3 | | [theislab/2021_Aliluev_Tritschler_gut_HFD](https://github.com/theislab/2021_Aliluev_Tritschler_gut_HFD) | 2 | 4 | 0 | 1 | | [theislab/2022_Tritschler_pancreas_cross_species](https://github.com/theislab/2022_Tritschler_pancreas_cross_species) | 2 | 3 | 0 | 1 | @@ -145,7 +146,6 @@ GitHub Dashboard | [theislab/covid_macrophages_integration](https://github.com/theislab/covid_macrophages_integration) | 2 | 5 | 0 | 4 | | [theislab/epicardiods_analysis](https://github.com/theislab/epicardiods_analysis) | 2 | 2 | 1 | 0 | | [theislab/flexible_priors](https://github.com/theislab/flexible_priors) | 2 | 2 | 0 | 0 | -| [theislab/flowVI](https://github.com/theislab/flowVI) | 2 | 1 | 0 | 0 | | [theislab/gut_lineage](https://github.com/theislab/gut_lineage) | 2 | 3 | 0 | 3 | | [theislab/HPA_reproducibility](https://github.com/theislab/HPA_reproducibility) | 2 | 3 | 0 | 0 | | [theislab/LineagePulse](https://github.com/theislab/LineagePulse) | 2 | 5 | 0 | 0 | diff --git a/index.html b/index.html index 2c396be..2991edc 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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- - - - - - - - + - + - + - + - + - + - + - + - - - - - - - diff --git a/repos.csv b/repos.csv index a906d18..de8b619 100644 --- a/repos.csv +++ b/repos.csv @@ -1,6 +1,6 @@ owner,repo,full_name,stargazers_count,subscribers_count,open_issues_count,forks_count,fork,html_url_repo,watchers_count,commit_id,commit_message,badge theislab,2018_Angelidis,theislab/2018_Angelidis,5,5,0,6,FALSE,https://github.com/theislab/2018_Angelidis,5,NA,NA,NA -theislab,2019_Strunz,theislab/2019_Strunz,7,5,2,10,FALSE,https://github.com/theislab/2019_Strunz,7,NA,NA,NA +theislab,2019_Strunz,theislab/2019_Strunz,7,5,1,10,FALSE,https://github.com/theislab/2019_Strunz,7,NA,NA,NA theislab,2020_Inhibition_LTbetaR-signalling,theislab/2020_Inhibition_LTbetaR-signalling,0,4,0,3,FALSE,https://github.com/theislab/2020_Inhibition_LTbetaR-signalling,0,NA,NA,NA theislab,2020_Mayr,theislab/2020_Mayr,6,6,0,8,FALSE,https://github.com/theislab/2020_Mayr,6,NA,NA,NA theislab,2020_iPS_Lung_Differentiation,theislab/2020_iPS_Lung_Differentiation,1,5,0,2,FALSE,https://github.com/theislab/2020_iPS_Lung_Differentiation,1,NA,NA,NA @@ -53,19 +53,19 @@ updated-dependencies: ... Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) -theislab,batchglm,theislab/batchglm,26,3,46,9,FALSE,https://github.com/theislab/batchglm,26,b893fd0ce020669ff38583e4ec135b10926093ae,fixed repo properties,[![](https://github.com/theislab/batchglm/workflows/Labeler/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3209792663) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) +theislab,batchglm,theislab/batchglm,26,3,46,9,FALSE,https://github.com/theislab/batchglm,26,b893fd0ce020669ff38583e4ec135b10926093ae,fixed repo properties,[![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) theislab,batchglm,theislab/batchglm,26,3,46,9,FALSE,https://github.com/theislab/batchglm,26,e78395cf7b88d0fbd198cf86b7667d726ac2673d,"Merge pull request #169 from theislab/cookietemple_sync_v2.1.1 Important cookietemple template update 2.1.1 released!",[![](https://github.com/theislab/batchglm/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3213182368) theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,3cb12b5e3c71749003718d8d1768e3b9790d8544,minor fixes,[![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) theislab,campa,theislab/campa,12,4,4,4,FALSE,https://github.com/theislab/campa,12,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,271,7,7,35,FALSE,https://github.com/theislab/cellrank,271,c11a86bbf3dd34f5c2b72f87c52ed6da4920f5a8,"Use new PyPI trusted publisher management (#1138) +theislab,cellrank,theislab/cellrank,272,7,7,35,FALSE,https://github.com/theislab/cellrank,272,c11a86bbf3dd34f5c2b72f87c52ed6da4920f5a8,"Use new PyPI trusted publisher management (#1138) * Use new PyPI trusted publisher management * Add forgotten on",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6923841301) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6923892678) -theislab,cellrank,theislab/cellrank,271,7,7,35,FALSE,https://github.com/theislab/cellrank,271,c4983d31c0243b7ee2893b4d02a13c104e1a6be2,Use new PyPI trusted publisher management,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6804858246) +theislab,cellrank,theislab/cellrank,272,7,7,35,FALSE,https://github.com/theislab/cellrank,272,c4983d31c0243b7ee2893b4d02a13c104e1a6be2,Use new PyPI trusted publisher management,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6804858246) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,3,0,0,0,FALSE,https://github.com/theislab/cellrank2_reproducibility,3,96c815f78ecbb75d9dc12f0ee995851acf314add,"Add `lint.yml` (#40) Adds CI to check linting on push to `main` or when opeing a PR to merge @@ -81,28 +81,35 @@ theislab,covid-perturbation,theislab/covid-perturbation,3,3,0,0,FALSE,https://gi theislab,covid_macrophages_integration,theislab/covid_macrophages_integration,2,5,0,4,FALSE,https://github.com/theislab/covid_macrophages_integration,2,NA,NA,NA theislab,cpa,theislab/cpa,60,4,10,12,FALSE,https://github.com/theislab/cpa,60,NA,NA,NA theislab,cpa-reproducibility,theislab/cpa-reproducibility,7,3,0,1,FALSE,https://github.com/theislab/cpa-reproducibility,7,NA,NA,NA -theislab,cross_system_integration,theislab/cross_system_integration,8,1,11,0,FALSE,https://github.com/theislab/cross_system_integration,8,NA,NA,NA +theislab,cross_system_integration,theislab/cross_system_integration,8,1,10,0,FALSE,https://github.com/theislab/cross_system_integration,8,NA,NA,NA theislab,dali,theislab/dali,0,7,0,1,FALSE,https://github.com/theislab/dali,0,NA,NA,NA theislab,dca,theislab/dca,224,11,31,67,FALSE,https://github.com/theislab/dca,224,NA,NA,NA theislab,deepflow,theislab/deepflow,28,5,1,14,FALSE,https://github.com/theislab/deepflow,28,NA,NA,NA -theislab,destiny,theislab/destiny,65,5,29,11,FALSE,https://github.com/theislab/destiny,65,8f083f6a741a07f424cc80bcd28a686b46ee43ea,Fix versions used in workflow (#62),[![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) -theislab,diffxpy,theislab/diffxpy,169,7,106,22,FALSE,https://github.com/theislab/diffxpy,169,NA,NA,NA +theislab,destiny,theislab/destiny,65,5,30,11,FALSE,https://github.com/theislab/destiny,65,8f083f6a741a07f424cc80bcd28a686b46ee43ea,Fix versions used in workflow (#62),[![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) +theislab,diffxpy,theislab/diffxpy,168,7,106,22,FALSE,https://github.com/theislab/diffxpy,168,NA,NA,NA theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,5,3,0,0,FALSE,https://github.com/theislab/disent,5,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA theislab,ehrapy,theislab/ehrapy,59,5,41,8,FALSE,https://github.com/theislab/ehrapy,59,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) -theislab,ehrapy,theislab/ehrapy,59,5,41,8,FALSE,https://github.com/theislab/ehrapy,59,c16c30ad1251e32a4774e66a1b189b24b9ee4a1f,"[pre-commit.ci] pre-commit autoupdate (#613) +theislab,ehrapy,theislab/ehrapy,59,5,41,8,FALSE,https://github.com/theislab/ehrapy,59,f6327737984a91a28d5b665ee3cd0bb63a2939d7,"Removed unused dependencies (#615) -updates: -- [github.com/astral-sh/ruff-pre-commit: v0.1.5 → v0.1.6](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.5...v0.1.6) +* Removed unused dependencies -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6942111260) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6942111253) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6942111264) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6942112031) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6942112912) +Signed-off-by: zethson + +* Tutorials update + +Signed-off-by: zethson + +--------- + +Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6955656126) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6955656122) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6955656113) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6955656118) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6955656115) theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA theislab,ehrapy-datasets,theislab/ehrapy-datasets,4,2,0,2,FALSE,https://github.com/theislab/ehrapy-datasets,4,cb7707afc4523a317cfb30c1d101091adfaa44cd,Add mimic-2 to CI,[![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) theislab,ehrapy-site,theislab/ehrapy-site,1,2,0,0,FALSE,https://github.com/theislab/ehrapy-site,1,NA,NA,NA -theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,4,2,3,2,FALSE,https://github.com/theislab/ehrapy-tutorials,4,NA,NA,NA +theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,4,3,1,2,FALSE,https://github.com/theislab/ehrapy-tutorials,4,NA,NA,NA theislab,ehrdata,theislab/ehrdata,0,1,1,0,FALSE,https://github.com/theislab/ehrdata,0,db3cf5cd156c67629b928ed3f918351a59bf1c1e,"Merge pull request #2 from theislab/pre-commit-ci-update-config [pre-commit.ci] pre-commit autoupdate",[![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/6936173366) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/6936173370) @@ -112,12 +119,12 @@ theislab,expiMap_reproducibility,theislab/expiMap_reproducibility,8,5,3,4,FALSE, theislab,extended-single-cell-best-practices-container,theislab/extended-single-cell-best-practices-container,4,4,2,1,FALSE,https://github.com/theislab/extended-single-cell-best-practices-container,4,NA,NA,NA theislab,feature-attribution-sc,theislab/feature-attribution-sc,4,2,8,1,FALSE,https://github.com/theislab/feature-attribution-sc,4,NA,NA,NA theislab,flexible_priors,theislab/flexible_priors,2,2,0,0,FALSE,https://github.com/theislab/flexible_priors,2,NA,NA,NA -theislab,flowVI,theislab/flowVI,2,1,0,0,FALSE,https://github.com/theislab/flowVI,2,NA,NA,NA +theislab,flowVI,theislab/flowVI,3,1,0,0,FALSE,https://github.com/theislab/flowVI,3,NA,NA,NA theislab,gastrulation_analysis,theislab/gastrulation_analysis,7,4,0,1,FALSE,https://github.com/theislab/gastrulation_analysis,7,NA,NA,NA theislab,geome,theislab/geome,13,3,5,4,FALSE,https://github.com/theislab/geome,13,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,59dde429fe8e8285931dfafd700565c20dd1ed6b,[status] 2023-11-20 12:09:04 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6943474784) +theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,0a1506ac7f586c6e566adb8fd2feccd2ced215a3,[status] 2023-11-21 12:10:53 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6956979307) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA @@ -191,15 +198,15 @@ theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimul theislab,paga,theislab/paga,173,10,21,29,FALSE,https://github.com/theislab/paga,173,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,3,3,0,5,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,3,NA,NA,NA -theislab,pertpy,theislab/pertpy,59,4,25,12,FALSE,https://github.com/theislab/pertpy,59,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" +theislab,pertpy,theislab/pertpy,59,4,27,13,FALSE,https://github.com/theislab/pertpy,59,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" This reverts commit 161fc137c5a23320a5799a22cd4d7212b550bca9.",[![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) -theislab,pertpy,theislab/pertpy,59,4,25,12,FALSE,https://github.com/theislab/pertpy,59,783d629df8741a1414b8bb2ffec523e38d8399a9,"Remove prettierignore +theislab,pertpy,theislab/pertpy,59,4,27,13,FALSE,https://github.com/theislab/pertpy,59,783d629df8741a1414b8bb2ffec523e38d8399a9,"Remove prettierignore -Signed-off-by: zethson ",[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6942958662) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6942958665) [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6942958663) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6942958660) -theislab,pertpy,theislab/pertpy,59,4,25,12,FALSE,https://github.com/theislab/pertpy,59,d00c5f9e7243d6b1984becf973509f5f8ae425fc,pre-commit,[![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) +Signed-off-by: zethson ",[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6942958662) +theislab,pertpy,theislab/pertpy,59,4,27,13,FALSE,https://github.com/theislab/pertpy,59,d00c5f9e7243d6b1984becf973509f5f8ae425fc,pre-commit,[![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) theislab,pertpy-datasets,theislab/pertpy-datasets,1,3,0,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA -theislab,pertpy-tutorials,theislab/pertpy-tutorials,4,4,3,6,FALSE,https://github.com/theislab/pertpy-tutorials,4,NA,NA,NA +theislab,pertpy-tutorials,theislab/pertpy-tutorials,4,4,4,6,FALSE,https://github.com/theislab/pertpy-tutorials,4,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,2,2,1,0,FALSE,https://github.com/theislab/perturbation-metrics,2,NA,NA,NA theislab,pseudodynamics,theislab/pseudodynamics,40,7,0,6,FALSE,https://github.com/theislab/pseudodynamics,40,NA,NA,NA theislab,reproducability_AutoGeneS,theislab/reproducability_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducability_AutoGeneS,0,NA,NA,NA @@ -235,7 +242,7 @@ theislab,scib-pipeline,theislab/scib-pipeline,42,7,14,26,FALSE,https://github.co theislab,scib-reproducibility,theislab/scib-reproducibility,44,6,2,11,FALSE,https://github.com/theislab/scib-reproducibility,44,NA,NA,NA theislab,scvelo,theislab/scvelo,363,14,84,99,FALSE,https://github.com/theislab/scvelo,363,NA,NA,NA theislab,scvelo_notebooks,theislab/scvelo_notebooks,24,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,24,NA,NA,NA -theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6937339075) +theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6951034287) theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,b06bf35d783b0c8f1dcd859d6568c3ad5124d2ab,fix load function,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6833382250) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6833382248) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6833382247) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6833382245) theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,ceb14c946f699c38d18a32192b76d4639caf845e,fix download links,[![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,NA,NA,NA @@ -360,8 +367,8 @@ Signed-off-by: zethson Co-authored-by: xlancelottx Co-authored-by: zethson Co-authored-by: Anna Schaar ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,3,1,0,2,FALSE,https://github.com/theislab/single-cell-transformer-papers,3,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1201,30,19,430,FALSE,https://github.com/theislab/single-cell-tutorial,1201,NA,NA,NA +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,5,1,0,2,FALSE,https://github.com/theislab/single-cell-transformer-papers,5,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1201,30,19,429,FALSE,https://github.com/theislab/single-cell-tutorial,1201,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,4,4,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,20,3,14,5,FALSE,https://github.com/theislab/spapros,20,642fb34d2ccbb1bb8730b239840bf1bfe06701f8,"[DEPENDABOT]: Bump importlib-resources from 5.12.0 to 6.1.1 in /docs @@ -380,7 +387,7 @@ updated-dependencies: Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088652) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088648) theislab,spapros,theislab/spapros,20,3,14,5,FALSE,https://github.com/theislab/spapros,20,c4c0903758ecb1acd0e16c1d227e59e8be1e28de,"Merge pull request #288 from theislab/development -Mention python package in docs",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6937996861) +Mention python package in docs",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6951665654) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA theislab,spapros_reproducibility,theislab/spapros_reproducibility,0,1,1,0,FALSE,https://github.com/theislab/spapros_reproducibility,0,NA,NA,NA @@ -389,7 +396,7 @@ theislab,spatial_scog_workshop_2022,theislab/spatial_scog_workshop_2022,42,9,0,2 theislab,squidpy_reproducibility,theislab/squidpy_reproducibility,8,2,0,5,FALSE,https://github.com/theislab/squidpy_reproducibility,8,NA,NA,NA theislab,superexacttestpy,theislab/superexacttestpy,9,2,3,0,FALSE,https://github.com/theislab/superexacttestpy,9,NA,NA,NA theislab,svaeligr,theislab/svaeligr,1,2,0,0,FALSE,https://github.com/theislab/svaeligr,1,NA,NA,NA -theislab,tcellmatch,theislab/tcellmatch,36,9,3,7,FALSE,https://github.com/theislab/tcellmatch,36,NA,NA,NA +theislab,tcellmatch,theislab/tcellmatch,37,9,3,7,FALSE,https://github.com/theislab/tcellmatch,37,NA,NA,NA theislab,theislab.github.io,theislab/theislab.github.io,7,2,9,0,FALSE,https://github.com/theislab/theislab.github.io,7,NA,NA,NA theislab,tissue,theislab/tissue,0,2,0,0,FALSE,https://github.com/theislab/tissue,0,NA,NA,NA theislab,tissue_reproducibility,theislab/tissue_reproducibility,1,3,0,0,FALSE,https://github.com/theislab/tissue_reproducibility,1,NA,NA,NA
theislab/cellrank271272 7 7 35
theislab/cellrank271272 7 7 35 8 166 13 55bcbb
theislab/destiny 65 52930 11 8f083f 5 41 8 - - - -c16c30 + + + +f63277
theislab/pertpy 59 425122713 <a href=“https://github.com/theislab/pertpy/commit/404835c82f9a3d943b85973c10130303d090839d” title=“Revert”Deleted JaxscgenPlot”“>404835 theislab/pertpy 59 42512 - - -2713 783d62
theislab/pertpy 59 425122713 d00c5f
3 46 9 + 11ffbb
3 46 9 - b893fd
14 5 - c4c090
2 0 059dde40a1506
theislab/transcription_factor_activity 1201 30 19430429
theislab/scvelo
theislab/diffxpy169168 7 106 22
theislab/tcellmatch3637 9 3 7 theislab/cross_system_integration 8 11110 0
theislab/2019_Strunz 7 521 10
0
theislab/single-cell-transformer-papers5102
theislab/cellrank_reproducibility_preprint 4 2 0 0
theislab/ehrapy-tutorials 42 31 2
theislab/extended-single-cell-best-practices-container 4 4 2 1
theislab/feature-attribution-sc 4 2 8 1
theislab/LODE 4 2 9 0
theislab/neural_organoid_atlas 4 2 0 1
theislab/pertpy-tutorials 4 434 6
theislab/covid-perturbation 3 3 0 0
theislab/flowVI3100
theislab/multires-consensus-clustering 3 0
theislab/single-cell-transformer-papers3102
theislab/singlecell_proteomics 3 4 4 3
theislab/2021_Aliluev_Tritschler_gut_HFD 2 4 0 1
theislab/2022_Tritschler_pancreas_cross_species 2 3 0 1
theislab/augurpy 2 2 10 0
theislab/bartseq-pipeline 2 4 0 3
theislab/campa_ana 2 4 0 0
theislab/covid_macrophages_integration 2 5 0 4
theislab/epicardiods_analysis 2 2 1 0
theislab/flexible_priors 2 2 0 0
theislab/flowVI2100
theislab/gut_lineage 2