Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update survival analysis regression models #840

Open
13 tasks done
aGuyLearning opened this issue Dec 13, 2024 · 0 comments · May be fixed by #842
Open
13 tasks done

Update survival analysis regression models #840

aGuyLearning opened this issue Dec 13, 2024 · 0 comments · May be fixed by #842
Assignees
Labels
enhancement New feature or request

Comments

@aGuyLearning
Copy link
Collaborator

aGuyLearning commented Dec 13, 2024

Description of feature

Pass along arguments of the regression based models in _sa.py and write output to Andata object.
The current idea is to refactor the _regression_model function into a preparation step and call the model.fit function in the public function.

  • refactor _regression_model to a preparation step

cox_ph

  • add arguments of liefelines function
  • write output to anndata object
  • key_added keyword (work in progress) for new entries prefix
  • make everything after adata, duration_col keyword only ("*,")

weibull_aft

  • add arguments of liefelines function
  • write output to anndata object
  • key_added keyword (work in progress) for new entries prefix
  • make everything after adata, duration_col keyword only ("*,")

log_logistic_aft

  • add arguments of liefelines function
  • write output to anndata object
  • key_added keyword (work in progress) for new entries prefix
  • make everything after adata, duration_col keyword only ("*,")
@aGuyLearning aGuyLearning added the enhancement New feature or request label Dec 13, 2024
@aGuyLearning aGuyLearning self-assigned this Dec 13, 2024
@aGuyLearning aGuyLearning linked a pull request Dec 20, 2024 that will close this issue
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

Successfully merging a pull request may close this issue.

1 participant