diff --git a/vignettes/Gene-Relevance.Rmd b/vignettes/Gene-Relevance.Rmd index 2aebaca..2a5632a 100644 --- a/vignettes/Gene-Relevance.Rmd +++ b/vignettes/Gene-Relevance.Rmd @@ -126,10 +126,13 @@ gms[-1] %>% map(~ .$ids[1:10]) %>% purrr::reduce(base::intersect) %>% cat(sep = ``` ```{r} -httr::GET('https://rest.uniprot.org/uniprotkb/search', query = list( - fields = 'accession,gene_names,cc_tissue_specificity', - format = 'tsv', - query = rowData(allen)$Uniprot[gms$cosine$ids[1:6]] %>% unlist() %>% paste(collapse = ' OR ') -)) %>% - httr::content(type = 'text/tab-separated-values', encoding = 'utf-8') +options(readr.show_col_types = FALSE) +tryCatch({ + httr::GET('https://rest.uniprot.org/uniprotkb/search', query = list( + fields = 'accession,gene_names,cc_tissue_specificity', + format = 'tsv', + query = rowData(allen)$Uniprot[gms$cosine$ids[1:6]] %>% unlist() %>% paste(collapse = ' OR ') + )) %>% + httr::content(type = 'text/tab-separated-values', encoding = 'utf-8') +}, error = function(e) e) ```