diff --git a/.github/dependabot.yml b/.github/dependabot.yml index 9db7a54..bb9c784 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -1,5 +1,9 @@ version: 2 updates: + - package-ecosystem: "github-actions" + directory: / + schedule: + interval: weekly - package-ecosystem: pip directory: / schedule: diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index a1e7041..3b7e1ea 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -11,8 +11,8 @@ jobs: permissions: id-token: write # to authenticate as Trusted Publisher to pypi.org steps: - - uses: actions/checkout@v3 - - uses: actions/setup-python@v4 + - uses: actions/checkout@v4 + - uses: actions/setup-python@v5 with: python-version: "3.x" cache: "pip" diff --git a/.github/workflows/run_tests.yml b/.github/workflows/run_tests.yml index 7a34da5..b6f281d 100644 --- a/.github/workflows/run_tests.yml +++ b/.github/workflows/run_tests.yml @@ -48,7 +48,7 @@ jobs: version: 1.0 - name: Set up Python - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 with: python-version: ${{ matrix.config.python }} cache: pip @@ -76,6 +76,7 @@ jobs: packages: | bioc::SingleCellExperiment bioc::scRNAseq + ${{ matrix.config.r == 'oldrel' && 'cran::rjson@0.2.21' || '' }} env: R_BIOC_VERSION: ${{ matrix.config.bioc }}