Main tool:
Additional tools:
- python 3.8.10
- perl 5.30.0
samtools ampliconclip -b bed.file input.bam
samtools sort -T /tmp/aln.sorted -o aln.sorted.bam aln.bamBetter documentation can be found at https://www.htslib.org/doc/samtools.html
Main tool:
Additional tools:
samtools ampliconclip -b bed.file input.bam
samtools sort -T /tmp/aln.sorted -o aln.sorted.bam aln.bamBetter documentation can be found at https://www.htslib.org/doc/samtools.html