Main tool: pyMLST
Code repository: https://github.com/bvalot/pyMLST
Additional tools:
- MAFFT : v7.490
- KMA : 1.3.28
- BLAT : v.35
Basic information on how to use this tool:
- executables: pyMLST, claMLST, wgMLST
- help: -h
- version: -v
- description: A Python Mlst Local Search Tool.
Additional information:
This container does not have any database. However, it can download it via app.
Full documentation: https://pymlst.readthedocs.io/en/latest/
## cg/wgMLST
# initialize database
wgMLST import DATABASE
# add interested strain
wgMLST add DATABASE GENOME
# cgMLST distance
wgMLST distance DATABASE
# MLST
claMLST import DATABASE
claMLST search DATABASE GENOME