Main tool:
Additional tools:
- perl 5.30.0
bcftools mpileup -A -d 200 -B -Q 0 -f {reference_genome} {bam} | bcftools call -mv -Ov -o bcftools_variants/{sample}.vcf
Better documentation can be found at https://www.htslib.org/doc/bcftools.html
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Main tool:
Additional tools:
bcftools mpileup -A -d 200 -B -Q 0 -f {reference_genome} {bam} | bcftools call -mv -Ov -o bcftools_variants/{sample}.vcf
Better documentation can be found at https://www.htslib.org/doc/bcftools.html