Survey of resources on RSE and RSEing

bibliography.bib

@@ -165,6 +165,42 @@ @TechReport{Appel2021
   url       = {https://hdl.handle.net/10419/240937},
 }
 
+@TechReport{Aragon2023,
+  author      = {Aragon, Selina and Antonioletti, Mario and Walker, Johanna and Chue Hong, Neil},
+  title       = {Understanding the software and data used in the social sciences: {A} study for the {E}conomics and {S}ocial {R}esearch {C}ouncil},
+  institution = {Software Sustainability Institute},
+  year        = {2023},
+  month       = nov,
+  doi         = {10.5281/zenodo.7785706},
+}
+
+@Online{ARCHERDrivingTest2022,
+  author  = {{ARCHER2 Training Team}},
+  title   = {{ARCHER2} {D}riving {T}est launched},
+  year    = {2022},
+  url     = {https://www.archer2.ac.uk/news/2022/01/24/driving-test.html},
+  month   = jan,
+  urldate = {2024-02-22},
+  day     = {24},
+}
+
+@Online{ARCHERDrivingTest2021,
+  author  = {Barrass, Clair},
+  title   = {{ARCHER} {D}riving {T}est retrospective},
+  year    = {2021},
+  url     = {https://www.archer2.ac.uk/news/2021/02/03/archer-driving-test.html},
+  month   = feb,
+  urldate = {2024-02-22},
+  day     = {3},
+}
+
+@Online{ARCHERDrivingTest,
+  title        = {{ARCHER2} {D}riving {T}est},
+  url          = {https://www.archer2.ac.uk/training/driving-test.html},
+  organization = {ARCHER2 Training Team},
+  urldate      = {2024-02-22},
+}
+
 @Article{Artaza2016,
   author    = {Artaza, Haydee and Chue Hong, Neil and Corpas, Manuel and Corpuz, Angel and Hooft, Rob W. W. and Jim{\'{e}}nez, Rafael C. and Lesko{\v{s}}ek, Brane and Olivier, Brett G. and Stourac, Jan and Svobodov{\'{a}} Va{\v{r}}ekov{\'{a}}, Radka and Van Parys, Thomas and Vaughan, Daniel},
   title     = {Top 10 metrics for life science software good practices},
@@ -264,6 +300,7 @@ @Article{Bacall2023
   volume    = {3},
   number    = {2},
   month     = feb,
+  issn      = {2691-1299},
   doi       = {10.1002/cpz1.682},
   publisher = {Wiley},
 }
@@ -365,6 +402,15 @@ @Misc{Barker2022b
   doi          = {10.5281/zenodo.7117842},
 }
 
+@TechReport{Barker2023,
+  author      = {Barker, Michelle and Breitmoser, Elena and Broadbent, Philippa and Chue Hong, Neil and Hettrick, Simon and Lampaki, Ioanna and Quinn, Anthony and Taylor, Rebecca},
+  title       = {Software and skills for research computing in the {UK}},
+  institution = {Software Sustainability Institute},
+  year        = {2023},
+  month       = nov,
+  doi         = {10.5281/zenodo.10473185},
+}
+
 @Article{Barone2017a,
   author        = {Barone, Lindsay and Williams, Jason and Micklos, David},
   title         = {Unmet needs for analyzing biological big data: A survey of 704 {NSF} principal investigators},
@@ -391,9 +437,7 @@ @Article{Barone2017b
   month     = nov,
   pages     = {e1005858},
   doi       = {10.1371/journal.pcbi.1005858},
-  owner     = {jgrad},
   publisher = {Public Library of Science ({PLoS})},
-  timestamp = {2023.08.22},
 }
 
 @Article{Barr2015,
@@ -550,6 +594,16 @@ @InProceedings{BorrasGene2018
   venue     = {Jerez, Spain},
 }
 
+@Book{Bourque2014,
+  author    = {Bourque, Pierre and Fairley, Richard E. and {IEEE Computer Society}},
+  title     = {Guide to the Software Engineering Body of Knowledge ({SWEBOK(R)}): Version 3.0},
+  year      = {2014},
+  edition   = {3},
+  publisher = {IEEE Computer Society Press},
+  isbn      = {978-0-7695-5166-1},
+  address   = {Washington, DC, USA},
+}
+
 @Article{Brauer2019,
   author    = {Brauer, Sanna and Korhonen, Anne-Maria and Siklander, Pirkko},
   title     = {Online scaffolding in digital open badge-driven learning},
@@ -599,9 +653,7 @@ @Article{Brazas2017a
   month     = feb,
   pages     = {098996},
   doi       = {10.1101/098996},
-  owner     = {jgrad},
   publisher = {Cold Spring Harbor Laboratory},
-  timestamp = {2023.08.29},
 }
 
 @Article{Brazas2017b,
@@ -729,6 +781,19 @@ @Article{CanalesNegron2020
   publisher = {Universidad Peruana de Ciencias Aplicadas},
 }
 
+@Article{Cantelli2022,
+  author    = {Cantelli, Gaia and Bateman, Alex and Brooksbank, Cath and Petrov, Anton I. and Malik-Sheriff, Rahuman S. and Ide-Smith, Michele and Hermjakob, Henning and Flicek, Paul and Apweiler, Rolf and Birney, Ewan and McEntyre, Johanna},
+  title     = {The European Bioinformatics Institute ({EMBL}-{EBI}) in 2021},
+  journal   = {Nucleic Acids Research},
+  year      = {2022},
+  volume    = {50},
+  number    = {D1},
+  month     = jan,
+  pages     = {D11--D19},
+  doi       = {10.1093/nar/gkab1127},
+  publisher = {Oxford University Press ({OUP})},
+}
+
 @Article{Carey2018,
   author    = {Carey, Maureen A. and Papin, Jason A.},
   title     = {Ten simple rules for biologists learning to program},
@@ -1425,6 +1490,26 @@ @misc{dfg_gsp
   doi          = {10.5281/zenodo.6472827},
 }
 
+@Misc{Dhane2024a,
+  author       = {Dhane, Fares and P{\'e}rez-Jvostov, Felipe and Corrie, Brian},
+  title        = {Alliance Research Software Survey Report},
+  year         = {2024},
+  month        = jan,
+  doi          = {10.5281/zenodo.8280449},
+  howpublished = {Zenodo},
+}
+
+@Misc{Dhane2024b,
+  author        = {Dhane, Fares and P{\'e}rez-Jvostov, Felipe and Corrie, Brian},
+  title         = {Rapport du sondage sur les logiciels de recherche de l'{A}lliance},
+  year          = {2024},
+  month         = jan,
+  doi           = {10.5281/zenodo.10569806},
+  howpublished  = {Zenodo},
+  related       = {Dhane2024a},
+  relatedstring = {Translation of},
+}
+
 @InCollection{Diamond2016,
   author       = {Diamond, James and Gonzalez, Pilar Carmina},
   title        = {Digital Badges for Professional Development: Teachers' Perceptions of the Value of a New Credentialing Currency},
@@ -1508,6 +1593,26 @@ @InCollection{Donnelly2018
   doi       = {10.3233/978-1-61499-923-2-655},
 }
 
+@Misc{Drac2023a,
+  author       = {{Digital Research Alliance of Canada, National Research Software Strategy Working Group}},
+  title        = {National Research Software Strategy 2023},
+  year         = {2023},
+  howpublished = {Zenodo},
+  month        = aug,
+  doi          = {10.5281/zenodo.10214741},
+}
+
+@Misc{Drac2023b,
+  author        = {{Alliance de recherche num{\'e}rique du Canada, Groupe de travail sur la strat{\'e}gie nationale en mati{\`e}re de logiciels de recherche}},
+  title         = {Strat{\'e}gie nationale en mati{\`e}re de logiciels de recherche 2023},
+  year          = {2023},
+  howpublished  = {Zenodo},
+  month         = aug,
+  doi           = {10.5281/zenodo.10214856},
+  related       = {Drac2023a},
+  relatedstring = {Translation of},
+}
+
 @TechReport{Duckles2016,
   author    = {Duckles, Beth M.},
   title     = {Value of Software Carpentry to Instructors Report},
@@ -1628,6 +1733,29 @@ @TechReport{EuroHPCJU2023
   url         = {https://eurohpc-ju.europa.eu/system/files/2023-03/Decision%203.2023.-%201st%20Amendment%20WP%202023.pdf},
 }
 
+@TechReport{EuropeanCommissionDGRI2024,
+  author    = {{European Commission, Directorate-General for Research and Innovation}},
+  title     = {Access to and preservation of scientific information in {E}urope -- 2023 report on the implementation of the {C}ommission {R}ecommendation 2018/790},
+  year      = {2024},
+  doi       = {10.2777/223623},
+  address   = {Luxembourg},
+  isbn      = {978-92-68-09795-3},
+  publisher = {Publications Office of the European Union},
+}
+
+@Article{EuropeanCommissionRecommendation2018,
+  author  = {{European Commission}},
+  title   = {{C}ommission {R}ecommendation ({EU}) 2018/790 of 25 {A}pril 2018 on access to and preservation of scientific information},
+  journal = {Official Journal of the European Union},
+  year    = {2018},
+  volume  = {61},
+  number  = {134},
+  month   = may,
+  issn    = {1977-0677},
+  url     = {http://data.europa.eu/eli/reco/2018/790/oj},
+  pages   = {12--18},
+}
+
 @online{EXCALIBUR,
 author = {ExCALIBUR},
 title = {{E}xascale {C}omputing {AL}gorithms \& {I}nfrastructures {B}enefiting {UK} {R}esearch},
@@ -1683,7 +1811,7 @@ @Article{FAIR4RS
 and Gruenpeter, Morane
 and Martinez, Paula Andrea
 and Honeyman, Tom},
-title={Introducing the FAIR Principles for research software},
+title={Introducing the {FAIR} {P}rinciples for research software},
 journal={Scientific Data},
 year={2022},
 month=oct,
@@ -2036,6 +2164,18 @@ @Article{GonzalezBarahona2022
   publisher = {Institute of Electrical and Electronics Engineers ({IEEE})},
 }
 
+@Misc{Goth2023,
+  author        = {Goth, Florian and Alves, Renato and Braun, Matthias and Castro, Leyla Jael and Chourdakis, Gerasimos and Christ, Simon and Cohen, Jeremy and Erxleben, Fredo and Grad, Jean-No{\"e}l and Hagdorn, Magnus and Hodges, Toby and Juckeland, Guido and Kempf, Dominic and Lamprecht, Anna-Lena and Linxweiler, Jan and Schwarzmeier, Moritz and Seibold, Heidi and Thiele, Jan Philipp and von Waldow, Harald and Wittke, Samantha},
+  title         = {Foundational Competencies and Responsibilities of a Research Software Engineer},
+  year          = {2023},
+  howpublished  = {arXiv},
+  month         = nov,
+  doi           = {10.48550/arXiv.2311.11457},
+  eprint        = {2311.11457},
+  archiveprefix = {arXiv},
+  primaryclass  = {cs.SE},
+}
+
 @article{Gotterbarn1999,
 author = {Gotterbarn, Don and Miller, Keith and Rogerson, Simon},
 title = {Software Engineering Code of Ethics is Approved},
@@ -2080,6 +2220,19 @@ @Article{Grossfield2022
   address   = {Boulder, Colorado, USA},
 }
 
+@Article{Grossmann2023,
+  author    = {Grossmann, Yves Vincent and Franke, Michael},
+  title     = {{S}oftware ist kein {B}eiprodukt!},
+  journal   = {b.i.t.online},
+  year      = {2023},
+  subtitle  = {Nachhaltige {F}orschungssoftware durch {S}oftware-{M}anagement-{P}l{\"a}ne},
+  volume    = {26},
+  number    = {5},
+  month     = oct,
+  pages     = {457--463},
+  url       = {https://www.b-i-t-online.de/heft/2023-05-fachbeitrag-grossmann.pdf},
+}
+
 @TechReport{Gruenpeter2021,
   author      = {Gruenpeter, Morane and Katz, Daniel S. and Lamprecht, Anna-Lena and Honeyman, Tom and Garijo, Daniel and Struck, Alexander and Niehues, Anna and Martinez, Paula Andrea and Castro, Leyla Jael and Rabemanantsoa, Tovo and Chue Hong, Neil P. and Martinez-Ortiz, Carlos and Sesink, Laurents and Liffers, Matthias and Fouilloux, Anne Claire and Erdmann, Chris and Peroni, Silvio and Martinez Lavanchy, Paula and Todorov, Ilian and Sinha, Manodeep},
   title       = {Defining Research Software: a controversial discussion},
@@ -2494,9 +2647,7 @@ @Article{InamoratodosSantos2023
   month     = feb,
   issn      = {2365-9440},
   doi       = {10.1186/s41239-022-00376-0},
-  owner     = {jgrad},
   publisher = {Springer Science and Business Media {LLC}},
-  timestamp = {2023.08.25},
 }
 
 @Online{INTERSECTOnlineResources,
@@ -3290,9 +3441,7 @@ @Article{Martins2020
   month     = oct,
   issn      = {1664-302X},
   doi       = {10.3389/fmicb.2020.578099},
-  owner     = {jgrad},
   publisher = {Frontiers Media {SA}},
-  timestamp = {2023.08.29},
 }
 
 @online{MATSE,
@@ -3339,6 +3488,20 @@ @InProceedings{Maxville2018
   address   = {New York, New York, USA},
 }
 
+@Article{Merow2023,
+  author    = {Merow, Cory and Boyle, Brad and Enquist, Brian J. and Feng, Xiao and Kass, Jamie M. and Maitner, Brian S. and McGill, Brian and Owens, Hannah and Park, Daniel S. and Paz, Andrea and Pinilla-Buitrago, Gonzalo E. and Urban, Mark C. and Varela, Sara and Wilson, Adam M.},
+  title     = {Better incentives are needed to reward academic software development},
+  journal   = {Nature Ecology {\&} Evolution},
+  year      = {2023},
+  volume    = {7},
+  number    = {5},
+  month     = feb,
+  pages     = {626--627},
+  issn      = {2397-334X},
+  doi       = {10.1038/s41559-023-02008-w},
+  publisher = {Springer Science and Business Media LLC},
+}
+
 @Article{McClatchy2020,
   author    = {McClatchy, Susan and Bass, Kristin M. and Gatti, Daniel M. and Moylan, Adam and Churchill, Gary},
   title     = {Nine quick tips for efficient bioinformatics curriculum development and training},
@@ -3617,6 +3780,14 @@ @inbook{Nieva2020
 doi = {10.1007/978-3-030-52829-4_4},
 }
 
+@Misc{NLeScienceCenterWhatIsRSE,
+  author       = {{Netherlands eScience Center}},
+  title        = {What is a {R}esearch {S}oftware {E}ngineer? A definition by the {N}etherlands {eS}cience {C}enter},
+  year         = {2023},
+  howpublished = {Zenodo},
+  doi          = {10.5281/zenodo.7994285},
+}
+
 @Article{Noor2022,
   author    = {Noor, Adeeb},
   title     = {Improving bioinformatics software quality through incorporation of software engineering practices},
@@ -3701,6 +3872,18 @@ @TechReport{OKeeffe2020
   publisher   = {Publications Office of the European Union},
 }
 
+@Article{Oladipo2022,
+  author    = {Oladipo, Francisca and Folorunso, Sakinat and Ogundepo, Ezekiel and Osigwe, Obinna and Akindele, Akinyinka},
+  title     = {Curriculum Development for {FAIR} Data Stewardship},
+  journal   = {Data Intelligence},
+  year      = {2022},
+  volume    = {4},
+  number    = {4},
+  pages     = {991--1012},
+  doi       = {10.1162/dint_a_00183},
+  publisher = {MIT Press},
+}
+
 @Misc{Oliver2021,
   author    = {Oliver, Jeff and Goldman, Julie and F{\"o}rstner, Konrad},
   title     = {Integration and reuse of {L}ibrary {C}arpentry content into curricula},
@@ -4328,8 +4511,6 @@ @Misc{Scholtens2019
   howpublished = {Zenodo},
   month        = oct,
   doi          = {10.5281/zenodo.3471707},
-  owner        = {jgrad},
-  timestamp    = {2023.07.20},
 }
 
 @InCollection{Schon2023,
@@ -4439,9 +4620,7 @@ @Article{Shanahan2021
   pages     = {100324},
   issn      = {2666-3899},
   doi       = {10.1016/j.patter.2021.100324},
-  owner     = {jgrad},
   publisher = {Elsevier {BV}},
-  timestamp = {2023.08.22},
 }
 
 @TechReport{ShapiroFutures2022,
@@ -4757,13 +4936,11 @@ @Article{Strasser2022
   publisher = {Public Library of Science ({PLoS})},
 }
 
-@Article{SURESOFT2022,
+@Misc{SURESOFT2022,
 author = {Blech, Christopher and Dreyer, Nils and Friebel, Matthias and Jacob, Christoph and Shamil Jassim, Mostafa and Jehl, Leander and Kapitza, R{\"u}diger and Krafczyk, Manfred and K{\"u}rner, Thomas and Langer, Sabine Christine and Linxweiler, Jan and Mahhouk, Mohammad and Marcus, Sven and Messadi, Ines and Peters, S{\"o}ren and Pilawa, Jan-Marc and Sreekumar, Harikrishnan K. and Str{\"o}tgen, Robert and Stump, Katrin and Vogel, Arne and Wolter, Mario},
 title = {{SURESOFT}: Towards Sustainable Research Software},
 year = {2022},
-publisher = {Technische Universit{\"a}t},
-address = {Braunschweig},
-keywords = {Research Software Engineering; Archiving; Virtualization; Continuous Integration; Testing; Reproducibility},
+howpublished = {Technische Universit{\"a}t Braunschweig},
 doi = {10.24355/dbbs.084-202210121528-0},
 }
 
@@ -5605,3 +5782,14 @@ @article{smith_SoftwareCitationPrinciples2016
   issn = {2376-5992},
   doi = {10.7717/peerj-cs.86}
 }
+
+@Misc{zuCastell2024,
+  author        = {zu Castell, Wolfgang and Dransch, Doris and Juckeland, Guido and Meistring, Marcel and Fritzsch, Bernadette and Gey, Ronny and H{\"o}pfner, Britta and K{\"o}hler, Martin and Mee{\ss}en, Christian and Mehrtens, Hela and M{\"u}hlbauer, Felix and Schindler, Sirko and Schnicke, Thomas and Bertelmann, Roland},
+  title         = {Towards a Quality Indicator for Research Data publications and Research Software publications -- A vision from the {H}elmholtz {A}ssociation},
+  year          = {2024},
+  howpublished  = {arXiv},
+  month         = jan,
+  eprint        = {2401.08804},
+  archiveprefix = {arXiv},
+  primaryclass  = {cs.DL},
+}