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index.html
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<!DOCTYPE HTML>
<!--
Dimension by HTML5 UP
html5up.net | @ajlkn
Free for personal and commercial use under the CCA 3.0 license (html5up.net/license)
-->
<html>
<head>
<title>Shiva | Bioinformatics and Computational Biology</title>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1, user-scalable=no" />
<link rel="stylesheet" href="assets/css/main.css" />
<noscript><link rel="stylesheet" href="assets/css/noscript.css" /></noscript>
</head>
<body class="is-preload">
<!-- Wrapper -->
<div id="wrapper">
<!-- Header -->
<header id="header">
<div class="content">
<div class="inner">
<h1>Shiva Thapa</h1>
<p> | MICROBIOME | BIOINFORMATICS | </p>
</div>
</div>
<nav>
<ul>
<li><a href="#about">About</a></li>
<li><a href="#work">Work</a></li>
<li><a href="#contact">Contact</a></li>
<!--<!<li><a href="#contact">Contact</a></li>-->
<!--<li><a href="#elements">Elements</a></li>-->
</ul>
</nav>
</header>
<!-- Main -->
<div id="main">
<!-- About -->
<article id="about">
<h2 class="major">About</h2>
<h3> Who I am </h3>
<p>Hi :) My name is Shiva. I like road-trips and photography. I also like cooking; however, it is more like conducting experiments - sometimes it works, and most of the time it fails!!!</p>
<h3> What I do</h3>
<p>I am a second-year PhD student co-advised by Drs <a href = "https://biology.uncg.edu/people/kasie-raymann/"> Kasie Raymann </a> and <a href="https://biology.uncg.edu/people/louis-marie-bobay-2/" > Louis-Marie Bobay </a> in the Department of Biology, at the University of North Carolina, Greensboro. My research interests lay at the union of emergent properties of complex systems - such as microbiome - and bioinformatics. My current research is focused on understanding fine-scale processes governing host-associated microbial dynamics within the honey bee gut.</p>
<ul class="icons">
<li><a href="https://twitter.com/thapasz_" class="icon brands fa-twitter"><span class="label">Twitter</span></a></li>
<li><a href="https://github.com/thapasz" class="icon brands fa-github"><span class="label">GitHub</span></a></li>
</ul>
</article>
<!-- Work -->
<article id="work">
<h2 class="major">Work</h2>
<h3>Microbial Community Assembly and Functional Dynamics</h3>
<span class="image main"><img src="images/bee3.jpeg" alt="" /></span>
<p>Studies have shown that host-microbes interactions affect diverse aspects of host physiology ranging from development and growth to conferring immunity. This could mean positive or negative effect upon hosts’ fitness. However, despite playing a crucial role in dictating host lifestyles, the factors shaping the microbial acquisition and assembly; interactions and maintenance is not well deciphered.</p>
<p>My current research aims to understand the fine-scale processes governing host associated microbial community and functional dynamics using experimental evolution, strain-level metagenomic profiling and in-silico community modeling.</p>
<h3>Predator-Prey Coexistence Dynamics</h3>
<span class="image main"><img src="images/netlogo.png" alt="" /></span>
<p>I got my master's from the East Tennessee State University, Johnson City, TN - a beautiful town tucked away in the northeastern TN mountains - where I studied modeling of complex systems under <a href = "https://www.etsu.edu/cas/biology/facultystaff/karsai.php" > Prof. Dr. Istvan Karsai. </a> My work there was focused on understanding the emergence of complex coexistence dynamics within predator-prey populations in-silico using Agent-Based Modeling (ABM; Netlogo) and statistical computing.</p>
</article>
<!-- Contact -->
<article id="contact">
<h2 class="major">Contact</h2>
<p>You can reach out to me @ s_thapa3 at uncg.edu. Thank you :) </p>
</article>
<!-- Elements -->
<article id="elements">
<h2 class="major">Elements</h2>
<section>
<h3 class="major">Text</h3>
<p>This is <b>bold</b> and this is <strong>strong</strong>. This is <i>italic</i> and this is <em>emphasized</em>.
This is <sup>superscript</sup> text and this is <sub>subscript</sub> text.
This is <u>underlined</u> and this is code: <code>for (;;) { ... }</code>. Finally, <a href="#">this is a link</a>.</p>
<hr />
<h2>Heading Level 2</h2>
<h3>Heading Level 3</h3>
<h4>Heading Level 4</h4>
<h5>Heading Level 5</h5>
<h6>Heading Level 6</h6>
<hr />
<h4>Blockquote</h4>
<blockquote>Fringilla nisl. Donec accumsan interdum nisi, quis tincidunt felis sagittis eget tempus euismod. Vestibulum ante ipsum primis in faucibus vestibulum. Blandit adipiscing eu felis iaculis volutpat ac adipiscing accumsan faucibus. Vestibulum ante ipsum primis in faucibus lorem ipsum dolor sit amet nullam adipiscing eu felis.</blockquote>
<h4>Preformatted</h4>
<pre><code>i = 0;
while (!deck.isInOrder()) {
print 'Iteration ' + i;
deck.shuffle();
i++;
}
print 'It took ' + i + ' iterations to sort the deck.';</code></pre>
</section>
<section>
<h3 class="major">Lists</h3>
<h4>Unordered</h4>
<ul>
<li>Dolor pulvinar etiam.</li>
<li>Sagittis adipiscing.</li>
<li>Felis enim feugiat.</li>
</ul>
<h4>Alternate</h4>
<ul class="alt">
<li>Dolor pulvinar etiam.</li>
<li>Sagittis adipiscing.</li>
<li>Felis enim feugiat.</li>
</ul>
<h4>Ordered</h4>
<ol>
<li>Dolor pulvinar etiam.</li>
<li>Etiam vel felis viverra.</li>
<li>Felis enim feugiat.</li>
<li>Dolor pulvinar etiam.</li>
<li>Etiam vel felis lorem.</li>
<li>Felis enim et feugiat.</li>
</ol>
<h4>Icons</h4>
<ul class="icons">
<li><a href="#" class="icon brands fa-twitter"><span class="label">Twitter</span></a></li>
<li><a href="#" class="icon brands fa-facebook-f"><span class="label">Facebook</span></a></li>
<li><a href="#" class="icon brands fa-instagram"><span class="label">Instagram</span></a></li>
<li><a href="#" class="icon brands fa-github"><span class="label">Github</span></a></li>
</ul>
<h4>Actions</h4>
<ul class="actions">
<li><a href="#" class="button primary">Default</a></li>
<li><a href="#" class="button">Default</a></li>
</ul>
<ul class="actions stacked">
<li><a href="#" class="button primary">Default</a></li>
<li><a href="#" class="button">Default</a></li>
</ul>
</section>
<section>
<h3 class="major">Table</h3>
<h4>Default</h4>
<div class="table-wrapper">
<table>
<thead>
<tr>
<th>Name</th>
<th>Description</th>
<th>Price</th>
</tr>
</thead>
<tbody>
<tr>
<td>Item One</td>
<td>Ante turpis integer aliquet porttitor.</td>
<td>29.99</td>
</tr>
<tr>
<td>Item Two</td>
<td>Vis ac commodo adipiscing arcu aliquet.</td>
<td>19.99</td>
</tr>
<tr>
<td>Item Three</td>
<td> Morbi faucibus arcu accumsan lorem.</td>
<td>29.99</td>
</tr>
<tr>
<td>Item Four</td>
<td>Vitae integer tempus condimentum.</td>
<td>19.99</td>
</tr>
<tr>
<td>Item Five</td>
<td>Ante turpis integer aliquet porttitor.</td>
<td>29.99</td>
</tr>
</tbody>
<tfoot>
<tr>
<td colspan="2"></td>
<td>100.00</td>
</tr>
</tfoot>
</table>
</div>
<h4>Alternate</h4>
<div class="table-wrapper">
<table class="alt">
<thead>
<tr>
<th>Name</th>
<th>Description</th>
<th>Price</th>
</tr>
</thead>
<tbody>
<tr>
<td>Item One</td>
<td>Ante turpis integer aliquet porttitor.</td>
<td>29.99</td>
</tr>
<tr>
<td>Item Two</td>
<td>Vis ac commodo adipiscing arcu aliquet.</td>
<td>19.99</td>
</tr>
<tr>
<td>Item Three</td>
<td> Morbi faucibus arcu accumsan lorem.</td>
<td>29.99</td>
</tr>
<tr>
<td>Item Four</td>
<td>Vitae integer tempus condimentum.</td>
<td>19.99</td>
</tr>
<tr>
<td>Item Five</td>
<td>Ante turpis integer aliquet porttitor.</td>
<td>29.99</td>
</tr>
</tbody>
<tfoot>
<tr>
<td colspan="2"></td>
<td>100.00</td>
</tr>
</tfoot>
</table>
</div>
</section>
<section>
<h3 class="major">Buttons</h3>
<ul class="actions">
<li><a href="#" class="button primary">Primary</a></li>
<li><a href="#" class="button">Default</a></li>
</ul>
<ul class="actions">
<li><a href="#" class="button">Default</a></li>
<li><a href="#" class="button small">Small</a></li>
</ul>
<ul class="actions">
<li><a href="#" class="button primary icon solid fa-download">Icon</a></li>
<li><a href="#" class="button icon solid fa-download">Icon</a></li>
</ul>
<ul class="actions">
<li><span class="button primary disabled">Disabled</span></li>
<li><span class="button disabled">Disabled</span></li>
</ul>
</section>
<section>
<h3 class="major">Form</h3>
<form method="post" action="#">
<div class="fields">
<div class="field half">
<label for="demo-name">Name</label>
<input type="text" name="demo-name" id="demo-name" value="" placeholder="Jane Doe" />
</div>
<div class="field half">
<label for="demo-email">Email</label>
<input type="email" name="demo-email" id="demo-email" value="" placeholder="[email protected]" />
</div>
<div class="field">
<label for="demo-category">Category</label>
<select name="demo-category" id="demo-category">
<option value="">-</option>
<option value="1">Manufacturing</option>
<option value="1">Shipping</option>
<option value="1">Administration</option>
<option value="1">Human Resources</option>
</select>
</div>
<div class="field half">
<input type="radio" id="demo-priority-low" name="demo-priority" checked>
<label for="demo-priority-low">Low</label>
</div>
<div class="field half">
<input type="radio" id="demo-priority-high" name="demo-priority">
<label for="demo-priority-high">High</label>
</div>
<div class="field half">
<input type="checkbox" id="demo-copy" name="demo-copy">
<label for="demo-copy">Email me a copy</label>
</div>
<div class="field half">
<input type="checkbox" id="demo-human" name="demo-human" checked>
<label for="demo-human">Not a robot</label>
</div>
<div class="field">
<label for="demo-message">Message</label>
<textarea name="demo-message" id="demo-message" placeholder="Enter your message" rows="6"></textarea>
</div>
</div>
<ul class="actions">
<li><input type="submit" value="Send Message" class="primary" /></li>
<li><input type="reset" value="Reset" /></li>
</ul>
</form>
</section>
</article>
</div>
<!-- Footer -->
<footer id="footer">
<p class="copyright">© thapasz. Design: <a href="https://html5up.net">HTML5 UP</a>.</p>
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