From b741609abada58b90a9b88e0817908a5f3c6fcad Mon Sep 17 00:00:00 2001 From: tabula Date: Tue, 28 Nov 2023 14:52:16 +0000 Subject: [PATCH] Built site for tabula@4a95d98 --- tabula/index.html | 9 +++--- tabula/pkgdown.yml | 2 +- tabula/reference/Rplot002.png | Bin 20417 -> 20436 bytes tabula/reference/bootstrap.html | 42 +++++++++++++------------- tabula/reference/jackknife.html | 40 ++++++++++++------------ tabula/reference/plot_diversity-1.png | Bin 59284 -> 59627 bytes tabula/reference/plot_diversity-2.png | Bin 54899 -> 55455 bytes tabula/reference/resample.html | 16 +++++----- tabula/reference/simulate-1.png | Bin 59623 -> 59641 bytes tabula/reference/simulate-2.png | Bin 54912 -> 54919 bytes tabula/search.json | 2 +- 11 files changed, 55 insertions(+), 56 deletions(-) diff --git a/tabula/index.html b/tabula/index.html index 5abcdb205..1beabefc5 100644 --- a/tabula/index.html +++ b/tabula/index.html @@ -97,11 +97,10 @@ - - - - -
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CRAN Version CRAN checks CRAN Downloads

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Project Status: Active – The project has reached a stable, usable state and is being actively developed.

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DOI Zenodo DOI JOSS

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Overview

An easy way to examine archaeological count data. This package provides several tests and measures of diversity: heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.), richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), turnover and similarity (Brainerd-Robinson, etc.). It allows to easily visualize count data and statistical thresholds: rank vs. abundance plots, heatmaps, Ford (1962) and Bertin (1977) diagrams, etc. tabula provides methods for:

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0.008905781 0.21561494 -#> La Paloma 2.329187 2.315151 -0.014035738 0.23872709 +#> Altamira 3.269200 3.277468 0.008268001 0.07791396 +#> Cueto de la Mina 2.955298 2.975532 0.020234070 0.15122621 +#> El Juyo 2.491683 2.527648 0.035964818 0.20193422 +#> El Cierro 2.485604 2.505578 0.019974086 0.21690891 +#> La Paloma 2.329187 2.309894 -0.019293066 0.24264598 bootstrap(h, f = summary) #> Min. 1st Qu. Median Mean 3rd Qu. Max. -#> Altamira 3.036801 3.235090 3.283645 3.281269 3.332792 3.518316 -#> Cueto de la Mina 2.441228 2.871436 2.975610 2.970540 3.069886 3.387301 -#> El Juyo 1.820076 2.400101 2.542248 2.527153 2.667644 3.076234 -#> El Cierro 1.585100 2.351945 2.503939 2.486466 2.643975 2.987453 -#> La Paloma 1.054920 2.147735 2.339372 2.309957 2.489357 2.947994 +#> Altamira 2.996500 3.225490 3.281419 3.276505 3.331537 3.528705 +#> Cueto de la Mina 2.470390 2.877698 2.982996 2.976349 3.079448 3.367807 +#> El Juyo 1.696646 2.392367 2.526090 2.517395 2.659698 3.140119 +#> El Cierro 1.540306 2.342038 2.499932 2.483194 2.644036 3.121281 +#> La Paloma 1.039721 2.161424 2.343933 2.311562 2.490940 2.944079 quant <- function(x) quantile(x, probs = c(0.25, 0.50)) bootstrap(h, f = quant) #> 25% 50% -#> Altamira 3.229431 3.283692 -#> Cueto de la Mina 2.882662 2.984654 -#> El Juyo 2.399893 2.544043 -#> El Cierro 2.350143 2.496380 -#> La Paloma 2.166085 2.355616 +#> Altamira 3.227563 3.286466 +#> Cueto de la Mina 2.870349 2.978058 +#> El Juyo 2.409175 2.542272 +#> El Cierro 2.336426 2.491478 +#> La Paloma 2.157161 2.338372 ## Jackknife resampling jackknife(h) @@ -157,12 +157,12 @@

Examples#> La Paloma 2.329187 2.305876 -1.0023704 0.25266291 bootstrap(h, f = summary) -#> Min. 1st Qu. Median Mean 3rd Qu. Max. -#> Altamira 2.866067 3.227303 3.287246 3.279038 3.334867 3.527037 -#> Cueto de la Mina 2.308211 2.883436 2.983872 2.975072 3.072375 3.372968 -#> El Juyo 1.717637 2.396265 2.542052 2.528269 2.665672 3.091073 -#> El Cierro 1.564280 2.333501 2.494036 2.478880 2.651471 3.086374 -#> La Paloma 1.153742 2.168155 2.344928 2.315985 2.491494 2.955980 +#> Min. 1st Qu. Median Mean 3rd Qu. Max. +#> Altamira 2.9693487 3.228514 3.280549 3.276755 3.329597 3.500539 +#> Cueto de la Mina 2.4545190 2.881676 2.976237 2.970362 3.071785 3.349421 +#> El Juyo 1.6893027 2.404125 2.540315 2.523551 2.655424 3.036905 +#> El Cierro 0.9002561 2.348662 2.491524 2.471091 2.621709 3.133622 +#> La Paloma 0.8675632 2.141848 2.344928 2.304303 2.502661 2.963117