From 23a4e32c7d5395def97a5ab2c6fcac29c582cf9a Mon Sep 17 00:00:00 2001
From: nfrerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Date: Tue, 3 Sep 2024 20:27:15 +0200
Subject: [PATCH] Follow changes in nexus

---
 R/coda_outliers.R   | 3 +--
 R/coda_statistics.R | 6 +++---
 2 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/R/coda_outliers.R b/R/coda_outliers.R
index 26e96fa..cfc36b8 100644
--- a/R/coda_outliers.R
+++ b/R/coda_outliers.R
@@ -78,9 +78,8 @@ coda_outliers_server <- function(id, x) {
 
         run_with_notification(
           {
-            nexus::outliers(
+            nexus::detect_outliers(
               x(),
-              groups = nexus::groups(x()),
               method = input$method,
               quantile = input$quantile
             )
diff --git a/R/coda_statistics.R b/R/coda_statistics.R
index b3867dc..7bdf63a 100644
--- a/R/coda_statistics.R
+++ b/R/coda_statistics.R
@@ -98,9 +98,9 @@ coda_summary_server <- function(id, x) {
       ## Metric variance by group
       if (nexus::any_assigned(x())) {
         index <- nexus::groups(x())
-        s <- nexus::aggregate(x(), by = index, FUN = nexus::metric_var)
+        s <- nexus::aggregate(x(), by = index, FUN = nexus::variance_total)
       } else {
-        m <- nexus::metric_var(x())
+        m <- nexus::variance_total(x())
         s <- matrix(m, nrow = 1, dimnames = list("", NULL))
       }
       colnames(s) <- c("metric variance")
@@ -234,7 +234,7 @@ coda_summary_server <- function(id, x) {
     ## Download -----
     output$download <- export_multiple(
       location = data_loc,
-      spread = data_spread,
+      # spread = data_spread,
       quantiles = data_quant,
       covariance = data_cov,
       variation = data_var,