From 1be4302aee0e89cabe5acac1256a19e112c3617f Mon Sep 17 00:00:00 2001
From: nfrerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Date: Tue, 12 Dec 2023 19:22:25 +0100
Subject: [PATCH] Small fix

---
 R/module_coda.R             | 2 +-
 R/module_coda_summary.R     | 4 ++--
 man/module_header_server.Rd | 5 +----
 3 files changed, 4 insertions(+), 7 deletions(-)

diff --git a/R/module_coda.R b/R/module_coda.R
index 69e016c..06f14ee 100644
--- a/R/module_coda.R
+++ b/R/module_coda.R
@@ -97,7 +97,7 @@ module_coda_server <- function(id, x) {
       req(x())
 
       tryCatch({
-        nexus::as_composition(from = x(), auto = FALSE)
+        nexus::as_composition(from = x(), auto = FALSE, verbose = get_option("verbose"))
       }, warning = function(w) {
         showNotification(ui = w, type = "warning")
         return(NULL)
diff --git a/R/module_coda_summary.R b/R/module_coda_summary.R
index 4991a1c..69c89a0 100644
--- a/R/module_coda_summary.R
+++ b/R/module_coda_summary.R
@@ -92,8 +92,8 @@ module_coda_summary_server <- function(id, x) {
     # })
 
     plot_heatmap <- reactive({
-      stats::heatmap(data_var(), distfun = as.dist,
-                     hclustfun = function(x) hclust(x, method = "ward.D2"),
+      stats::heatmap(data_var(), distfun = stats::as.dist,
+                     hclustfun = function(x) stats::hclust(x, method = "ward.D2"),
                      symm = TRUE, scale = "none")
       grDevices::recordPlot()
     })
diff --git a/man/module_header_server.Rd b/man/module_header_server.Rd
index 22af7ff..e9d97f2 100644
--- a/man/module_header_server.Rd
+++ b/man/module_header_server.Rd
@@ -4,14 +4,11 @@
 \alias{module_header_server}
 \title{Header Server}
 \usage{
-module_header_server(id, x)
+module_header_server(id)
 }
 \arguments{
 \item{id}{An ID string that corresponds with the ID used to call the module's
 UI function.}
-
-\item{x}{A reactive \code{data.frame} (typically returned by
-\code{\link[=module_import_server]{module_import_server()}}).}
 }
 \description{
 Header Server