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Examples illustrating basic stages of analyzing calcium imaging data

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image-analysis

Examples illustrating basic stages of analyzing calcium imaging data

Requirements

We will use the TIFFStack class to load image stacks, which can be found on GitHub: https://github.com/DylanMuir/TIFFStack

Contents

  • RoiMaker - A simple class that makes a GUI to interactively place elliptical ROIs on an image
  • dftregister - Calculates x/y frame translation to remove motion artifacts
  • shiftframe - Fast method for applying frame translations
  • image_analysis_pipeline - example basic image analysis pipeline

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Examples illustrating basic stages of analyzing calcium imaging data

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