TARDIS v3.0.dev3808

Changes:

• 7d7c4bc Black formatting applied to tests
• 98a6840 Corrected quickstart hyperlink
• 8522e7c blackify tests
• 86d8945 Corrected the Hyperlink reference
• f2e82f8 Add black check workflow
• dabe080 reformatted files
• 84460c4 add black check workflow

This list of changes was auto generated.

TARDIS v3.0.dev3801

Changes:

• 9c5e24c Fix tests with --generate-reference flag
• e2243ce update env file (#1393)
• 4bd4f80 Copyright date automatically updates pr/1404
• 3c6395f added functionality for automatic date updation in docs & fixed the 2013-
• 7ee2a08 fix tests with --generate-reference flag

This list of changes was auto generated.

TARDIS v3.0.dev3796

Changes:

• e8ef961 Explicitly add parso to dependencies
• 7fbf0c7 add parso

This list of changes was auto generated.

TARDIS v3.0.dev3794

Changes:

• bf8f7ad Merge pull request #1241 from jaladh-singhal/widgets/kromer_plot
• 7bc3afb Removed commented debugging code & added newlines at EOF
• af4380a Made test_spectrum to handle hdf saving of scalars
• a58869f Added docstrings to KromerPlotter methods
• ecd709a Added docstring to calculation method & improved masking
• 02fff16 Reordered methods to group related methods sequentially
• 2584ed4 Fixed problems in plot when packet_wvl_range is used
• 1714e13 Reduce fontsize of mpl plot labels
• 41a3cb5 Used plot_util to make labels render in plotly
• 59e9a65 Made dedicated method for showing colorbar in plotly & mpl

See More

• 4ee827e Added plolty plotting methods
• dc948e8 Separated calculation code in a different method
• a26d49a Removed redundant calculation of packet_nu_range_mask
• d53b080 Isolated plotting and calculation code in generate_plot
• 25ae720 Added docstrings to data handling methods
• 1ee0535 Renamed spectrum_frequency to spectrum_frequency_bins
• 415e360 Added classmethod for reading data from hdf
• ce88c67 Added KromerPlotter to init
• 48ac765 Added relevant properties which need to be saved
• dd7c2d6 Simplified Kromer Plotter with new structure [ sn/tardisanalysis#35 ]
• 8957afe Added docstrings to data attributes
• 02f9500 Added classmethod to create plotter from hdf
• f7503ee Added missing required properties to save in hdf
• 5b6a635 Converted SimulationKromerPlotter to class method
• 6ec4b8f Added modified kromer plot to work with widgets

This list of changes was auto generated.

TARDIS v3.0.dev3769

Changes:

• 2d9ada5 Update Matterbridge docs (#1395)
• cadccff Fix incorrect docstrings (#1369) [ #680 ]
• c950345 add preview docs section (#1383)
• 23ac153 Fix documentation build (#1392)
• 0c09399 Revert "Fixing docs building problem (#1387)" (#1394)
• 943bab3 Fixing docs building problem (#1387)
• 575c228 Merge pull request #1380 from andrewfullard/packet-logging-oatch
• 4a509b6 Update tardis/montecarlo/montecarlo_numba/single_packet_loop.py
• 1710023 Update tardis/montecarlo/montecarlo_numba/single_packet_loop.py
• 77c2782 Small fixes for existing workflows (#1384)

See More

• d4c74f1 Possible fix for vpacket last interaction spectrum
• 613527a Virtual packet logging fix
• 2def773 FIx real packet logging for last interaction type

This list of changes was auto generated.

TARDIS v3.0.dev3756

Changes:

• 162f280 Merge pull request #1382 from smithis7/build_problem
• 3c2b83b fixing quickstart problem
• ce5b665 Merge pull request #1379 from smithis7/reorganizing_2
• 9ffee87 fixing hyperlink in quickstart
• 140d540 adding atomic to docs/using/components
• e358411 adding configuration to docs/using/components
• 683d5d7 putting models in using/components
• 002e635 turning tardis_widgits into gui on docs/index.rst
• 3ac370b changing tardis_widgits to gui
• 8c53894 fixing merge conflict

See More

• 6565a80 Merge pull request #1378 from smithis7/fixing_index
• 1597b1c renaming running to using
• 5236056 fixing mistake
• 1c706d5 Merge pull request #1371 from smithis7/cleaning_docs
• da51efa Update CI doc section (#1372)
• bb0a1b4 Merge pull request #1375 from andrewfullard/rpacket-logging-fix
• a49e4cc Fixed rpacket logging of properties
• 7fa5d16 Merge pull request #1354 from tardis-sn/virt-packet-logging-fix
• 1008b9b Fix test to match new style
• 61d7289 black applied
• 25c9390 vpacket logging now suitable for kromer plot
• 28e161a doing Jaladh's suggestions
• 29685d8 Merge pull request #1368 from KevinCawley/Issue_1176_good [ #1176 ]
• 186351c Merge pull request #1365 from andrewfullard/numba-parallel-patch
• 4a6793c Merge pull request #1331 from epassaro/action-changelog
• ac98ba8 adding using_formal_integral
• 3d29959 fixing heading on CONTRIBUTING.md
• 84d0e1c removing physical_quantities from old_physics
• 3ff6efa adding custom_source and physical_quantities to additional interactivity section
• 5f3edbc fixing headers on outdated sections
• 74d1c1f fixing new_plasma toc
• b9a5ef6 clarifying which file to use in toctree, as there is a to_hdf.rst and a to_hdf.ipynb
• 82f171e reorganizing docs/running
• 4c534c2 deleting unused files
• 073c581 Update datahandler.py
• 2275f72 Update atomic.py
• f56017d Update base.py
• 13ede90 Merge branch 'master' into Issue_1176_good
• 5a6b518 Added note about ion 0 is neutral
• d51b7f9 Initial numba parallelization
• a1e5633 Another test
• 56c5067 Merge pull request #4 from KevinCawley/documentation
• 9d66023 Update to fork
• a2a36e6 Fixed two random indentation irregularities found upon review
• ef40bb3 Merge pull request #3 from KevinCawley/documentation [ #680 ]
• df2e719 Fixed the last file for #680
• 76b7ae5 Merge pull request #2 from KevinCawley/documentation [ #680 ]
• 460e793 Finished issue #680
• 307a2d2 Some more documentation updates
• 69fd1ed Inside of tardis/docs/pphysics/plasma/plasma_plots updated two files multi-line # to be docstrings where appropriate
• e0053be Fix to virtual packet logging
• 9102446 commit with bot account
• 7a2a501 add comment block
• eef40f5 change job name
• efe3ba5 add cron trigger for doc pipeline
• 3be30a4 add push step
• d5b60b0 add token
• ff6c04c Initial commit

This list of changes was auto generated.

TARDIS v3.0.dev3698

Changes:

• 1249c4e Merge pull request #1366 from jaladh-singhal/hdf-scalars-fix
• 077cfe7 Removed buf_opened flag since buf.is_open has that info
• 722392f Improved docstrings
• 5ae8d7c Merge pull request #1364 from smithis7/issue_1357_fix [ #1357 ]
• 080552b Fixed a typo in docstring
• aa37e1e Added overwrite=True option in tests using hdfs
• a7f6050 Added overwrite option in docstrings and fixed them
• 1fa9dce Made scalars overwrite & added option to control overwriting
• ebe33c5 adding andrew to tardis core
• bbddc40 restructuring additional interactivity section and changing the order of components

See More

• 765745e restructuring components and GUI subsections
• 686617e Merge remote-tracking branch 'upstream/master' into issue_1357_fix
• 6564a5e Fix of Issue #680 (#1359)
• 3283db4 Fixing issue #1177 (#1361)
• 9c98722 adding team_and_governance index file
• bafa776 adding alumni section and other team and governance corrections
• 32e7841 fixing old_physics
• ff2199b restructuring docs except for using tardis section

This list of changes was auto generated.

TARDIS v3.0.dev3680

Changes:

• ca7cfcb Merge pull request #1358 from chvogl/fix-formal-integral
• 90d3a6a Fixed some tests, commented out one that breaks for unknown reasons
• 5af7bd3 Enable formal integral tests
• 074b3a0 Fix C formal integral
• f07228f Add Arjun's emails to .mailmap
• 7746608 Add Arjun's emails to .mailmap
• 229b676 Merge pull request #929 from tardis-sn/numba_montecarlo

This list of changes was auto generated.

TARDIS v3.0.dev3673

Changes:

• 982ab2b Update README.rst
• 164862d Merge pull request #1353 from epassaro/fix-doc-workflow
• a2c6169 fix doc workflow
• cda41f1 Merge pull request #1349 from KevinCawley/master
• 101a493 Merge pull request #929 from tardis-sn/numba_montecarlo
• 18f579d updating the rst file
• d14025e Update debug_numba.rst
• 7830b2e final modifications to the notebook
• 05dd1e1 Update ads.ipynb
• a293275 Update ads.ipynb

See More

• 1285575 Test fixes
• e9e5ed6 Update to ads.ipynb
• 735ec65 Added the header to the .rst
• 76dead8 xfail tests with reasons
• 700d1c2 Added the documentation for research papers that use TARDIS
• cb9791c Fix vpacket collection set properties test
• 59a0cf7 black reformatting for numba montecarlo
• ecc5779 Fix syntax errors
• 44a14ed Merge branch 'master' into numba_montecarlo
• 8ba9ed8 Update tardis/montecarlo/init.py
• ab039d2 Update tardis/io/schemas/montecarlo.yml
• dee956b Apply Wolfgang's suggestions from code review
• 900cd81 Static seed for random test
• 884c55a Fix Vpacket collection spec
• 4458145 Fix for 1D arrays
• b72ed62 Simplified output of vpacket logging
• e68ce56 Only add vpackets that have data to the log
• dba60f3 Improved virtual packet logging
• b69986d Logging into HDF, probably
• 6513d18 Vpacket logging partially restored
• 5361ecb Merge pull request #1 from tardis-sn/master
• f1953b4 Cleaned out old fixtures
• 1123fa1 Fixed C compare, added legacy mode flag
• a6a0383 Fixed test?
• e05f76d More packets, cleanup
• a97349a Back to the future (with a simpler C test)
• 0569f9e More C comparison improvements
• a340ee9 Improved C comparison test (still fails)
• 7e0aa5c Currently failing C comparison test written
• 1c44001 More packet tests
• aae1adb numba macro_atom test, numba seed set fixture
• 22ffc8b NumbaPlasma initialization test
• f25c042 Fix nu_diff < 0 error (for now...)
• f209cde Even better bad vpacket test
• a14fda8 Added test that breaks tracing vpackets
• 8d50445 xfail macro_atom test for now
• 7a326ef Fix vpacket close line test, rpacket line ID
• 8b4c55f Added static packet for individual testing
• 3ebff83 Rewrote close line and last line tests to avoid branching
• fbf01ba Fix error_model njit arg
• 9c9a3d3 Syntax fix
• 93005f1 pyne version fix
• bbc4772 No more ** exponents
• 38a2129 Change numba error mode to numpy
• 4c12843 Transition probabilities to numba
• 0f37d87 Fix packet fixture scope, add interaction.py tests
• f5a56eb More vpacket testing, if statement in vpacket fix
• e01305a Fixed vpacket trace within shell test
• 6f53ae4 change tests to currently skip
• a80166a setup of verysimple numba fixtures and tests
• 078220f fix for line_interaction_type
• 4c6177f change jitclass import to numba.experimental
• 4fc9bda Numba montecarlo tests merged (#1319)
• 8ddef2d Merge pull request #1318 from wkerzendorf/numba_montecarlo_profile1
• 979fbda update sigma thomson use from numba_config
• 99f4b18 change to use math instead of np
• 0feb68e Fixed calculate_distance_line showing nu_diff < 0 (#1317)
• 705be39 Re-add C formal integral (#1309)
• ca1f528 Vpacket print removed
• 3eb8e8f Vpacket updates
• da3c287 Change the Numba code to reflect the C Code
• 47cf44a Fix merge conflicts
• 5eb5433 Reformat with black
• 67788d4 add some virtual packet spawn
• e7a92e8 Co-authored-by: [email protected]
• 8e1aebe use spawn range
• 7deb107 modify virtual packet spawn range
• 5d6b790 Final numba PR (#1285)
• 73ba9db Explicitly pass number of vpackets to montecarlo_main_loop (#1244)
• feee984 Debugging relativity on numba_montecarlo (#1136)
• df884c4 several changes
• 7375efe work on full relativity
• 0e8b087 fix estimators
• 4d9dec8 fix formal integral
• b02f53c finish estimators
• 6a1d065 add estimators
• fc79fe8 recalcuate distance_electron
• e8fcf4d document montecarlo part
• 7fe7d4f add temporary_v_packet_bins
• 51aed35 rewire montecarlo with new numba part
• c728696 make the numba branch compatible with the rest of tardis
• 2a9ec25 add tracking to rpack4ets
• 7b8c86a debugged macro_atom - very close now
• 5e4d347 further work on macro_atom
• a520234 adding initial macroatom setup
• d2df2d7 Final V-Packet addition
• 77a8a3f Add vpacket development
• 3d711a3 Clean up rpacket
• 7878bbd several changes to vpacket
• c4179a2 add vpacket stuff
• 1ef454f some optimizations
• 2970800 fix packet init
• a0f30b0 add estimators
• d59c8f7 update and clean up the numba interface
• 24bc8b2 adding a packet collection
• 54f3151 further restructure of the numba montecarlo
• ee7f007 add first vpacket stuff
• c440853 add electron scattering
• 77c014d add e scattering
• a27a9da add tau_electron
• af2c440 adding electron scattering
• 735ed5e final simple version
• 44e2fe3 several fixes
• 11e76db more fixes
• 17007c8 fixing simple implementation
• a16f23d further simplified r_packet
• bfd571d rewrite problem
• 9702834 cleaned up version
• c10a239 finished simple implementation
• 7ce0bf0 numba rewrite
• 38aae41 working numba implementation
• b26410b branch point to diverge from c
• c53425f add numba stuff
• 0449387 still working on fixing numba_test
• f6b0be3 several edits later
• 394167f commit stuff
• d22a1c8 all sorts of nonsense
• 90bfb22 final numba test - seems to work.
• 7df78ae getting closer - TARDIS now fails
• 532b414 add more numba conversions
• 059cbff Add new numba stuff
• 883c605 commenting out the montecarlo part

This list of changes was auto generated.

TARDIS v3.0.dev3541

Changes:

• 071a48e Merge pull request #1340 from jaladh-singhal/plot_util
• caa3daf Moved helper staticmethods to a dedicated module

This list of changes was auto generated.