From 186a8fb4f0e576b6bbe807162238ab599922a2a9 Mon Sep 17 00:00:00 2001 From: tardis-bot <60989672+tardis-bot@users.noreply.github.com> Date: Sun, 28 Jul 2024 06:36:58 +0530 Subject: [PATCH] Post-release 2024.07.28 (#2751) Automated changes for post-release 2024.07.28 --- CHANGELOG.md | 441 +++++---------------------------------------------- README.rst | 4 +- 2 files changed, 41 insertions(+), 404 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 5af8c173aea..4f11fddddbd 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,44 @@ ## Changelog +### release-2024.07.28 (2024/07/27 20:43) +- [2750](https://github.com/tardis-sn/tardis/pull/2750) Pre-release 2024.07.28 (2750) (@tardis-bot) +- [2718](https://github.com/tardis-sn/tardis/pull/2718) Weighted Packet Sampler (2718) (@Rodot-) +- [2747](https://github.com/tardis-sn/tardis/pull/2747) Commit hash of PR HEAD not found fix (2747) (@officialasishkumar) +- [2740](https://github.com/tardis-sn/tardis/pull/2740) Adds number_of_packets property to the packet collection (2740) (@andrewfullard) +- [2735](https://github.com/tardis-sn/tardis/pull/2735) Add solve method to SpectrumSolver (2735) (@andrewfullard) +- [2660](https://github.com/tardis-sn/tardis/pull/2660) Add ruff workflow (2660) (@atharva-2001) +- [2744](https://github.com/tardis-sn/tardis/pull/2744) fix docs build by removing the `parse_simulation_state` function from the `tardis.io.model` module and moving it to the `tardis.io.model.parse_simulation_state` module (2744) (@wkerzendorf) +- [2742](https://github.com/tardis-sn/tardis/pull/2742) Fix Codecov (2742) (@atharva-2001) +- [2664](https://github.com/tardis-sn/tardis/pull/2664) [Restructure/plasma] Refactor the simulation state initialization (2664) (@wkerzendorf) +- [2734](https://github.com/tardis-sn/tardis/pull/2734) Moves time explosion off the transport solver to the transport state (2734) (@andrewfullard) +- [2722](https://github.com/tardis-sn/tardis/pull/2722) Refactor benchmarks (2722) (@officialasishkumar) +- [2613](https://github.com/tardis-sn/tardis/pull/2613) [Restructure/plasma] restructure the Radiationfields (2613) (@wkerzendorf) +- [2731](https://github.com/tardis-sn/tardis/pull/2731) Fast formal integral (2731) (@Rodot-) +- [2725](https://github.com/tardis-sn/tardis/pull/2725) Fast Formal Integral (2725) (@Rodot-) +- [2728](https://github.com/tardis-sn/tardis/pull/2728) Fix Failing docstr-cov Badge (2728) (@atharva-2001) +- [2727](https://github.com/tardis-sn/tardis/pull/2727) Fix Cache Issues (2727) (@atharva-2001) +- [2726](https://github.com/tardis-sn/tardis/pull/2726) Codecov fix (2726) (@atharva-2001) +- [2689](https://github.com/tardis-sn/tardis/pull/2689) Spectrum refactor (2689) (@andrewfullard) +- [2721](https://github.com/tardis-sn/tardis/pull/2721) Pre Release Workflow Fix (2721) (@atharva-2001) +- [2716](https://github.com/tardis-sn/tardis/pull/2716) Implement last interaction tracker (2716) (@Sumit112192) +- [2717](https://github.com/tardis-sn/tardis/pull/2717) Remove parameters and speed up benchmarks (2717) (@officialasishkumar) +- [2709](https://github.com/tardis-sn/tardis/pull/2709) Add google analytics key to tardis docs (2709) (@KasukabeDefenceForce) +- [2711](https://github.com/tardis-sn/tardis/pull/2711) Shifting git cliff changelog generator configuration to pyproject.toml (2711) (@KasukabeDefenceForce) +- [2713](https://github.com/tardis-sn/tardis/pull/2713) Move pip tests to release workflow (2713) (@atharva-2001) +- [2699](https://github.com/tardis-sn/tardis/pull/2699) Separate Continuum Tests (2699) (@atharva-2001) +- [2677](https://github.com/tardis-sn/tardis/pull/2677) Last Interaction Velocity Plot (2677) (@sarthak-dv) +- [2705](https://github.com/tardis-sn/tardis/pull/2705) Montecarlo globals (limited scope) (2705) (@andrewfullard) +- [2703](https://github.com/tardis-sn/tardis/pull/2703) Pre Release Fix (2703) (@atharva-2001) +- [2704](https://github.com/tardis-sn/tardis/pull/2704) Shifting update refdata workflow to archive folder (2704) (@KasukabeDefenceForce) +- [2702](https://github.com/tardis-sn/tardis/pull/2702) Benchmark fix for github actions (2702) (@officialasishkumar) +- [2640](https://github.com/tardis-sn/tardis/pull/2640) Refactor and add more benchmarks for montecarlo (2640) (@officialasishkumar) +- [2698](https://github.com/tardis-sn/tardis/pull/2698) Move setup environment steps to composite action (2698) (@atharva-2001) +- [2696](https://github.com/tardis-sn/tardis/pull/2696) Adds continuum marker to pytest and continuum tests (2696) (@andrewfullard) +- [2667](https://github.com/tardis-sn/tardis/pull/2667) Add arm64 conda-lock file (2667) (@atharva-2001) +- [2695](https://github.com/tardis-sn/tardis/pull/2695) Logging - avoid the zero division warning (2695) (@DeerWhale) +- [2694](https://github.com/tardis-sn/tardis/pull/2694) Change setup.cfg to pyproject.toml (2694) (@KasukabeDefenceForce) +- [2119](https://github.com/tardis-sn/tardis/pull/2119) adding RPacketPlotter to TARDIS (2119) (@jayantbhakar) +- [2693](https://github.com/tardis-sn/tardis/pull/2693) Post-release 2024.07.07 (2693) (@tardis-bot) ### release-2024.07.07 (2024/07/06 20:49) - [2692](https://github.com/tardis-sn/tardis/pull/2692) Pre-release 2024.07.07 (2692) (@tardis-bot) - [2656](https://github.com/tardis-sn/tardis/pull/2656) fix benchmark action (2656) (@officialasishkumar) @@ -695,7 +734,6 @@ - [1492](https://github.com/tardis-sn/tardis/pull/1492) Fix docstring mistakes in #1145 (1492) (@chvogl) - [1505](https://github.com/tardis-sn/tardis/pull/1505) Fixing Visualization Notebook Hyperlink (1505) (@KevinCawley) - [1481](https://github.com/tardis-sn/tardis/pull/1481) Added Documentation for Parallel execution with Numba and OpenMP (1481) (@aribalam) -- [1145](https://github.com/tardis-sn/tardis/pull/1145) Add photoionization-related rates (1145) (@chvogl) - [1470](https://github.com/tardis-sn/tardis/pull/1470) Incorporating old physics section of the documentation (1470) (@isaacgsmith) - [1459](https://github.com/tardis-sn/tardis/pull/1459) Removed the deprecated --with-vpacket-logging flag (1459) (@antreev-brar) - [1462](https://github.com/tardis-sn/tardis/pull/1462) Renamed widgets subpackage to visualization and restructured modules within it (1462) (@jaladh-singhal) @@ -711,447 +749,46 @@ - [1441](https://github.com/tardis-sn/tardis/pull/1441) Rename SEDec to SDEC in Spectral element DEComposition plot (1441) (@jaladh-singhal) - [1430](https://github.com/tardis-sn/tardis/pull/1430) compare refdata with arbitrary labels (1430) (@epassaro) - [1431](https://github.com/tardis-sn/tardis/pull/1431) Documentation guidelines hotfix (1431) (@KevinCawley) -- [1424](https://github.com/tardis-sn/tardis/pull/1424) Rename Kromer Plot to Spectral Element Decomposition (SEDec) Plot (1424) (@jaladh-singhal) -- [1409](https://github.com/tardis-sn/tardis/pull/1409) add docstr-coverage workflow (1409) (@epassaro) -- [1405](https://github.com/tardis-sn/tardis/pull/1405) Restructured development workflow and added code quality & documentation guidelines in it (1405) (@andrewfullard) -- [1421](https://github.com/tardis-sn/tardis/pull/1421) Old physics reorganization (1421) (@andrewfullard) -- [1423](https://github.com/tardis-sn/tardis/pull/1423) fixes for ci docs (1423) (@andrewfullard) -- [1420](https://github.com/tardis-sn/tardis/pull/1420) Conversion of enlisted variable to int64 datatype (1420) (@andrewfullard) -- [1403](https://github.com/tardis-sn/tardis/pull/1403) Fixing Hyperlinks in Documentation (1403) (@andrewfullard) -- [1410](https://github.com/tardis-sn/tardis/pull/1410) Post reference data results (1410) (@andrewfullard) -- [1415](https://github.com/tardis-sn/tardis/pull/1415) Add .log to gitignore, disabled montecarlo log (1415) (@andrewfullard) ### v3.0.dev3808 (2021/01/21 11:22) -- [1414](https://github.com/tardis-sn/tardis/pull/1414) blackify tests (1414) (@andrewfullard) -- [1413](https://github.com/tardis-sn/tardis/pull/1413) Corrected the Hyperlink reference (1413) (@andrewfullard) -- [1398](https://github.com/tardis-sn/tardis/pull/1398) add black check workflow (1398) (@andrewfullard) ### v3.0.dev3801 (2021/01/08 16:28) -- [1399](https://github.com/tardis-sn/tardis/pull/1399) fix tests with --generate-reference flag (1399) (@andrewfullard) -- [1393](https://github.com/tardis-sn/tardis/pull/1393) Update environment file (1393) (@epassaro) -- [1404](https://github.com/tardis-sn/tardis/pull/1404) added functionality for automatic date updation in docs (1404) (@andrewfullard) ### v3.0.dev3796 (2020/12/28 12:12) -- [1402](https://github.com/tardis-sn/tardis/pull/1402) explicitly add parso to dependencies (1402) (@andrewfullard) ### v3.0.dev3794 (2020/12/21 10:22) -- [1241](https://github.com/tardis-sn/tardis/pull/1241) Add modified Kromer plot to work with widgets (1241) (@marxwillia) ### v3.0.dev3769 (2020/12/18 16:07) -- [1395](https://github.com/tardis-sn/tardis/pull/1395) Update Matterbridge docs (1395) (@epassaro) -- [1369](https://github.com/tardis-sn/tardis/pull/1369) Fix incorrect docstrings (1369) (@KevinCawley) -- [1383](https://github.com/tardis-sn/tardis/pull/1383) add preview docs section (1383) (@epassaro) -- [1392](https://github.com/tardis-sn/tardis/pull/1392) Fix documentation build (1392) (@epassaro) -- [1394](https://github.com/tardis-sn/tardis/pull/1394) Revert "Fixing docs building problem" (1394) (@andrewfullard) -- [1387](https://github.com/tardis-sn/tardis/pull/1387) Fixing docs building problem (1387) (@isaacgsmith) -- [1380](https://github.com/tardis-sn/tardis/pull/1380) Packet logging fixes for visualization (1380) (@andrewfullard) -- [1384](https://github.com/tardis-sn/tardis/pull/1384) Small fixes for existing workflows (1384) (@epassaro) ### v3.0.dev3756 (2020/12/11 14:43) -- [1382](https://github.com/tardis-sn/tardis/pull/1382) Fixing Quickstart Problem (1382) (@andrewfullard) -- [1379](https://github.com/tardis-sn/tardis/pull/1379) Reorganizing files in docs (2/2) (1379) (@andrewfullard) -- [1378](https://github.com/tardis-sn/tardis/pull/1378) Adding Plasma File in TOC (1378) (@andrewfullard) -- [1371](https://github.com/tardis-sn/tardis/pull/1371) Reorganizing files in docs (1/2) (1371) (@andrewfullard) -- [1372](https://github.com/tardis-sn/tardis/pull/1372) Update CI doc section (1372) (@epassaro) -- [1375](https://github.com/tardis-sn/tardis/pull/1375) Fixed real packet logging of properties (1375) (@andrewfullard) -- [1354](https://github.com/tardis-sn/tardis/pull/1354) Virtual packet logging fix (1354) (@andrewfullard) -- [1368](https://github.com/tardis-sn/tardis/pull/1368) Fix of Issue #1176 (1368) (@andrewfullard) -- [1365](https://github.com/tardis-sn/tardis/pull/1365) Parallel numba setup (1365) (@andrewfullard) -- [1331](https://github.com/tardis-sn/tardis/pull/1331) Update changelog workflow (1331) (@andrewfullard) ### v3.0.dev3698 (2020/12/04 14:50) -- [1366](https://github.com/tardis-sn/tardis/pull/1366) Fix duplicate appending of scalars in HDF writer and add an overwrite option (1366) (@andrewfullard) -- [1364](https://github.com/tardis-sn/tardis/pull/1364) Fixing issue #1357 (1364) (@andrewfullard) -- [1359](https://github.com/tardis-sn/tardis/pull/1359) Fix of Issue #680 (1359) (@KevinCawley) -- [1361](https://github.com/tardis-sn/tardis/pull/1361) Fixing issue #1177 (1361) (@isaacgsmith) ### v3.0.dev3680 (2020/11/25 13:38) -- [1358](https://github.com/tardis-sn/tardis/pull/1358) Fix C formal integral (1358) (@andrewfullard) -- [1352](https://github.com/tardis-sn/tardis/pull/1352) Add Arjun's emails to .mailmap (1352) (@andrewfullard) -- [929](https://github.com/tardis-sn/tardis/pull/929) Numba montecarlo (929) (@wkerzendorf) ### v3.0.dev3673 (2020/11/18 11:26) -- [1353](https://github.com/tardis-sn/tardis/pull/1353) fix doc workflow (1353) (@wkerzendorf) -- [1349](https://github.com/tardis-sn/tardis/pull/1349) Adding documentation for research articles that used TARDIS (1349) (@andrewfullard) ### v3.0.dev3541 (2020/11/10 13:45) -- [1340](https://github.com/tardis-sn/tardis/pull/1340) Moved staticmethods of line_info module to a dedicated plot_util module (1340) (@marxwillia) ### v3.0.dev3539 (2020/11/04 11:50) -- [1333](https://github.com/tardis-sn/tardis/pull/1333) Rename testing pipeline (1333) (@epassaro) -- [1300](https://github.com/tardis-sn/tardis/pull/1300) Remove pip install option from TARDIS installation docs (1300) (@jaladh-singhal) -- [1330](https://github.com/tardis-sn/tardis/pull/1330) Small fix for release pipeline (1330) (@epassaro) -- [1332](https://github.com/tardis-sn/tardis/pull/1332) Remove helper scripts (1332) (@epassaro) -- [1335](https://github.com/tardis-sn/tardis/pull/1335) Updated gitignore to ignore auto-generated files (1335) (@jaladh-singhal) -- [1326](https://github.com/tardis-sn/tardis/pull/1326) Add workflow for autodeploying documentation to github pages via an action (1326) (@morganlee123) -- [1283](https://github.com/tardis-sn/tardis/pull/1283) Changed latex strings to raw strings (1283) (@Ak0303) -- [1310](https://github.com/tardis-sn/tardis/pull/1310) Apply new template to refdata pipeline (1310) (@epassaro) -- [1308](https://github.com/tardis-sn/tardis/pull/1308) Apply new template to release pipeline (1308) (@epassaro) ### v3.0.dev3527 (2020/10/05 12:43) -- [1313](https://github.com/tardis-sn/tardis/pull/1313) Add Sponsor button to TARDIS (1313) (@jaladh-singhal) ### v3.0.dev3526 (2020/10/01 05:50) -- [1312](https://github.com/tardis-sn/tardis/pull/1312) Add Matterbridge documentation (1312) (@epassaro) -- [1274](https://github.com/tardis-sn/tardis/pull/1274) Add space to plasma error message (1274) (@marxwillia) -- [1280](https://github.com/tardis-sn/tardis/pull/1280) Add widgets documentation to tardis docs (1280) (@marxwillia) ### v3.0.dev3510 (2020/09/25 11:56) -- [1299](https://github.com/tardis-sn/tardis/pull/1299) Model configuration output in HDF (1299) (@andrewfullard) -- [1304](https://github.com/tardis-sn/tardis/pull/1304) Use tardis-refdata from Azure mirror (CI/CD) (1304) (@epassaro) -- [1264](https://github.com/tardis-sn/tardis/pull/1264) Add line info widget to widgets subpackage (1264) (@jaladh-singhal) ### v3.0.dev3504 (2020/09/09 06:16) -- [1296](https://github.com/tardis-sn/tardis/pull/1296) Pin pyne to 0.7.0 (1296) (@andrewfullard) -- [1319](https://github.com/tardis-sn/tardis/pull/1319) Numba montecarlo tests merged (1319) (@chvogl) -- [1318](https://github.com/tardis-sn/tardis/pull/1318) Numba montecarlo profile1 (1318) (@Rodot-) -- [1317](https://github.com/tardis-sn/tardis/pull/1317) Fixed `calculate_distance_line` showing nu_diff < 0 (1317) (@Rodot-) -- [1309](https://github.com/tardis-sn/tardis/pull/1309) Re-add C formal integral (1309) (@chvogl) ### v3.0.dev3503 (2020/09/04 05:18) -- [1291](https://github.com/tardis-sn/tardis/pull/1291) Download atom data from opensupernova mirror (1291) (@epassaro) -- [1254](https://github.com/tardis-sn/tardis/pull/1254) Fix how virtual_packet properties are saved in hdf (1254) (@jaladh-singhal) -- [1278](https://github.com/tardis-sn/tardis/pull/1278) Pin numpy to v1.19 (1278) (@epassaro) ### v3.0.dev3500 (2020/08/12 05:52) -- [1271](https://github.com/tardis-sn/tardis/pull/1271) Move to NumPy 1.19 (1271) (@epassaro) -- [1266](https://github.com/tardis-sn/tardis/pull/1266) Move to Pandas 1.x (1266) (@epassaro) -- [1235](https://github.com/tardis-sn/tardis/pull/1235) test and fix for issue #1228 (1235) (@ebjordi) ### v3.0.dev3497 (2020/08/07 11:26) -- [1267](https://github.com/tardis-sn/tardis/pull/1267) Temporarily fetch refdata from GDrive (1267) (@epassaro) -- [1265](https://github.com/tardis-sn/tardis/pull/1265) add GIT_LFS_SMUDGE (1265) (@kaushik94) -- [1262](https://github.com/tardis-sn/tardis/pull/1262) Update package versions (1262) (@epassaro) -- [1263](https://github.com/tardis-sn/tardis/pull/1263) Clean up status badge display (1263) (@chvogl) -- [1261](https://github.com/tardis-sn/tardis/pull/1261) Add governance document (1261) (@wkerzendorf) ### v3.0.dev3487 (2020/07/30 18:18) -- [1259](https://github.com/tardis-sn/tardis/pull/1259) Emphasised reporting instructions in code of conduct (1259) (@harpolea) -- [1255](https://github.com/tardis-sn/tardis/pull/1255) Pin pyne to v0.5 (1255) (@epassaro) -- [1213](https://github.com/tardis-sn/tardis/pull/1213) Re-applied Black formatting to tardis after excluding undesired directories (1213) (@jaladh-singhal) ### v3.0.dev3484 (2020/07/19 10:30) -- [1210](https://github.com/tardis-sn/tardis/pull/1210) [MRG] Using Mamba in Pipelines (1210) (@kaushik94) -- [1237](https://github.com/tardis-sn/tardis/pull/1237) Add new Contribution guidelines (1237) (@jaladh-singhal) -- [1238](https://github.com/tardis-sn/tardis/pull/1238) code of conduct symlink (1238) (@wkerzendorf) -- [1234](https://github.com/tardis-sn/tardis/pull/1234) TARDIS Code of Conduct (1234) (@wkerzendorf) -- [1233](https://github.com/tardis-sn/tardis/pull/1233) Update of the Governance model (1233) (@wkerzendorf) -- [1231](https://github.com/tardis-sn/tardis/pull/1231) Roadmap Documentation Page (1231) (@marxwillia) -- [1227](https://github.com/tardis-sn/tardis/pull/1227) Restore caching to spectrum_integrated (1227) (@arjunsavel) ### v3.0.dev3477 (2020/07/08 23:06) -- [1218](https://github.com/tardis-sn/tardis/pull/1218) Move and rename coverage file (1218) (@arjunsavel) -- [1224](https://github.com/tardis-sn/tardis/pull/1224) Added better mission statement (1224) (@ycamacho) -- [1190](https://github.com/tardis-sn/tardis/pull/1190) Change `pytestconfig` to `request.config` (1190) (@epassaro) -- [1219](https://github.com/tardis-sn/tardis/pull/1219) Update index.rst to add mission statement (1219) (@ycamacho) ### v3.0.dev3472 (2020/06/27 16:11) -- [1203](https://github.com/tardis-sn/tardis/pull/1203) Minor changes to the environment file and cleanup (1203) (@epassaro) -- [1209](https://github.com/tardis-sn/tardis/pull/1209) add sashank27 ORCID ID (1209) (@sashank27) -- [1207](https://github.com/tardis-sn/tardis/pull/1207) add git-blame-ignore for code style black Changes (1207) (@wkerzendorf) -- [1201](https://github.com/tardis-sn/tardis/pull/1201) Code style black (1201) (@wkerzendorf) -- [1200](https://github.com/tardis-sn/tardis/pull/1200) Add jaladh-singhal's orcid to .orcid.csv (1200) (@jaladh-singhal) -- [1197](https://github.com/tardis-sn/tardis/pull/1197) add arjun's name to the ORCID list (1197) (@arjunsavel) -- [1166](https://github.com/tardis-sn/tardis/pull/1166) Create a new subpackage for jupyter-widgets and add shell info widgets (1166) (@jaladh-singhal) ### v3.0.dev3463 (2020/06/19 18:51) -- [1195](https://github.com/tardis-sn/tardis/pull/1195) Fix badges in README.rst (1195) (@epassaro) -- [1193](https://github.com/tardis-sn/tardis/pull/1193) Unpin astropy version (1193) (@epassaro) -- [1191](https://github.com/tardis-sn/tardis/pull/1191) Add note to tell users which OS are supported (issue #1125) (1191) (@ebjordi) -- [1158](https://github.com/tardis-sn/tardis/pull/1158) Make consistency edits to documentation (1158) (@arjunsavel) ### v3.0.dev3459 (2020/06/12 14:01) -- [1185](https://github.com/tardis-sn/tardis/pull/1185) Upgrade pytest version (1185) (@epassaro) ### v3.0.dev3458 (2020/06/02 15:11) -- [1180](https://github.com/tardis-sn/tardis/pull/1180) Remove test pipeline (1180) (@epassaro) -- [1153](https://github.com/tardis-sn/tardis/pull/1153) update doc page to a notebook (1153) (@sashank27) -- [1150](https://github.com/tardis-sn/tardis/pull/1150) Fix the Plasma tests (1150) (@wkerzendorf) -- [1178](https://github.com/tardis-sn/tardis/pull/1178) Update mailmap (1178) (@epassaro) -- [1171](https://github.com/tardis-sn/tardis/pull/1171) Print statement debug (1171) (@arjunsavel) -- [1165](https://github.com/tardis-sn/tardis/pull/1165) Fix callbacks in run_tardis (1165) (@Rodot-) ### v3.0.dev3448 (2020/05/28 13:08) -- [1173](https://github.com/tardis-sn/tardis/pull/1173) Fix GUI and plasma tests (1173) (@marxwillia) -- [1168](https://github.com/tardis-sn/tardis/pull/1168) Add checkpoint to PR template checklist (1168) (@harpolea) -- [1162](https://github.com/tardis-sn/tardis/pull/1162) Fix broken pipelines (1162) (@epassaro) ### v3.0.dev3442 (2020/05/21 19:34) -- [1159](https://github.com/tardis-sn/tardis/pull/1159) Montecarlo/fix omp integrator (1159) (@Rodot-) -- [1155](https://github.com/tardis-sn/tardis/pull/1155) CodeCov reintegration (1155) (@wkerzendorf) -- [1157](https://github.com/tardis-sn/tardis/pull/1157) Update .mailmap (1157) (@epassaro) ### v3.0.dev3439 (2020/05/20 09:25) -- [1142](https://github.com/tardis-sn/tardis/pull/1142) Split release pipeline (1142) (@epassaro) -- [1151](https://github.com/tardis-sn/tardis/pull/1151) Git ignored VSCode specific files (1151) (@jaladh-singhal) -- [1149](https://github.com/tardis-sn/tardis/pull/1149) Made plot size larger in quickstart notebook (1149) (@jaladh-singhal) -- [1147](https://github.com/tardis-sn/tardis/pull/1147) allow downloading of example file in quickstart (1147) (@sashank27) -- [1105](https://github.com/tardis-sn/tardis/pull/1105) Add skip condition if QT_API is no set (issue #1101) (1105) (@marxwillia) -- [1143](https://github.com/tardis-sn/tardis/pull/1143) Set manual trigger on file (compare refdata) (1143) (@marxwillia) -- [1144](https://github.com/tardis-sn/tardis/pull/1144) add option to execute quickstart in build (1144) (@sashank27) ### v3.0.dev3424 (2020/05/07 11:29) -- [1133](https://github.com/tardis-sn/tardis/pull/1133) Solve pending issues of the release pipeline (1133) (@epassaro) -- [1141](https://github.com/tardis-sn/tardis/pull/1141) fix warnings in quickstart (1141) (@sashank27) -- [1137](https://github.com/tardis-sn/tardis/pull/1137) Increasing glob-like omission of coverage files (1137) (@arjunsavel) -- [1139](https://github.com/tardis-sn/tardis/pull/1139) Added more file types to git ignore (1139) (@jaladh-singhal) -- [1134](https://github.com/tardis-sn/tardis/pull/1134) Update mailmap (1134) (@orbitfold) -- [1135](https://github.com/tardis-sn/tardis/pull/1135) Running tests on MacOS-10.14 (1135) (@orbitfold) -- [1285](https://github.com/tardis-sn/tardis/pull/1285) Final numba PR (1285) (@arjunsavel) -- [1244](https://github.com/tardis-sn/tardis/pull/1244) Fix numba_montecarlo virtual spectrum (1244) (@arjunsavel) -- [1136](https://github.com/tardis-sn/tardis/pull/1136) Debugging relativity on numba_montecarlo (1136) (@arjunsavel) -- [1068](https://github.com/tardis-sn/tardis/pull/1068) Migrate gui to PyQt5 (issue #988) (1068) (@ebjordi) -- [1085](https://github.com/tardis-sn/tardis/pull/1085) Solves issue #680 for tardis.util.base (1085) (@marxwillia) -- [1055](https://github.com/tardis-sn/tardis/pull/1055) renamed capmanager class functions to its new ones (1055) (@not4win) -- [1048](https://github.com/tardis-sn/tardis/pull/1048) Re-activate TARDIS tests (1048) (@epassaro) ### v3.0.dev3409 (2020/02/24 23:02) -- [1046](https://github.com/tardis-sn/tardis/pull/1046) Updated zenodo.json (1046) (@epassaro) -- [1045](https://github.com/tardis-sn/tardis/pull/1045) Fix file paths at `diff` step in release pipeline (1045) (@epassaro) -- [1040](https://github.com/tardis-sn/tardis/pull/1040) Re-activate release job (1040) (@epassaro) -- [1039](https://github.com/tardis-sn/tardis/pull/1039) Update .mailmap (1039) (@epassaro) ### v3.0.dev3403 (2020/02/19 10:55) -- [1031](https://github.com/tardis-sn/tardis/pull/1031) Create Zenodo JSON file (1031) (@epassaro) -- [1036](https://github.com/tardis-sn/tardis/pull/1036) Update zenodo.json (1036) (@epassaro) -- [1035](https://github.com/tardis-sn/tardis/pull/1035) Update .mailmap (1035) (@epassaro) -- [1034](https://github.com/tardis-sn/tardis/pull/1034) Update .mailmap (1034) (@epassaro) -- [1032](https://github.com/tardis-sn/tardis/pull/1032) Add Mark Magee to .mailmap (1032) (@epassaro) -- [1025](https://github.com/tardis-sn/tardis/pull/1025) Add `compilers` to environment YAML file (1025) (@epassaro) -- [1026](https://github.com/tardis-sn/tardis/pull/1026) Minor changes to Azure release (1026) (@epassaro) ### 3.0.dev3396 (2020/02/07 10:00) -- [1027](https://github.com/tardis-sn/tardis/pull/1027) Added Mark Magee (1027) (@MarkMageeAstro) -- [1024](https://github.com/tardis-sn/tardis/pull/1024) Add epassaro orcid (1024) (@epassaro) -- [1022](https://github.com/tardis-sn/tardis/pull/1022) Added my orcid (1022) (@harpolea) ### 3.0.dev3384 (2020/02/02 16:56) -- [1021](https://github.com/tardis-sn/tardis/pull/1021) Set cron job, disable CI and PR (1021) (@epassaro) ### 3.0.dev3383 (2020/02/02 14:01) -- [1015](https://github.com/tardis-sn/tardis/pull/1015) Set up release TARDIS version with Azure Pipelines (1015) (@epassaro) -- [1020](https://github.com/tardis-sn/tardis/pull/1020) Update .mailmap (1020) (@livnehra) -- [1018](https://github.com/tardis-sn/tardis/pull/1018) Updated .mailmap (1018) (@epassaro) -- [1010](https://github.com/tardis-sn/tardis/pull/1010) Pipeline for comparing reference data (1010) (@epassaro) -- [1016](https://github.com/tardis-sn/tardis/pull/1016) Removed GH Action for release versions (1016) (@epassaro) -- [1013](https://github.com/tardis-sn/tardis/pull/1013) Fixed typo in GH Action (1013) (@epassaro) -- [1006](https://github.com/tardis-sn/tardis/pull/1006) Trying to get the right version number for automatic release (1006) (@epassaro) -- [1008](https://github.com/tardis-sn/tardis/pull/1008) Improvements for the update_reference section [docs] (1008) (@epassaro) -- [1011](https://github.com/tardis-sn/tardis/pull/1011) Gui fix (1011) (@marxwillia) -- [1009](https://github.com/tardis-sn/tardis/pull/1009) Fix for packet source unit test (1009) (@epassaro) -- [1007](https://github.com/tardis-sn/tardis/pull/1007) Fix for vboundary tests (1007) (@epassaro) -- [995](https://github.com/tardis-sn/tardis/pull/995) Checking failing tests on Azure (995) (@kaushik94) -- [1005](https://github.com/tardis-sn/tardis/pull/1005) Automatic TARDIS releases (1005) (@epassaro) -- [1004](https://github.com/tardis-sn/tardis/pull/1004) Fixed csvy abundance indexing bug (1004) (@marxwillia) -- [1003](https://github.com/tardis-sn/tardis/pull/1003) Custom source packets (1003) (@marxwillia) -- [994](https://github.com/tardis-sn/tardis/pull/994) Large cleanup operation (994) (@wkerzendorf) -- [992](https://github.com/tardis-sn/tardis/pull/992) Changes made to documentation for update_refdata (992) (@kowal180) -- [967](https://github.com/tardis-sn/tardis/pull/967) log additional properties in hdf witeout when --with-vpacket-logging is present (967) (@kaushik94) -- [969](https://github.com/tardis-sn/tardis/pull/969) Fixes numpydoc for util (969) (@kowal180) -- [985](https://github.com/tardis-sn/tardis/pull/985) Fix typo (985) (@jreichenbach-msu) -- [983](https://github.com/tardis-sn/tardis/pull/983) Fix installation documentation (983) (@jreichenbach-msu) -- [982](https://github.com/tardis-sn/tardis/pull/982) Pinned `numpy` to v1.15 (982) (@epassaro) -- [978](https://github.com/tardis-sn/tardis/pull/978) Add further fix to quickstart link (978) (@jreichenbach-msu) -- [975](https://github.com/tardis-sn/tardis/pull/975) Add links to Quickstart (975) (@jreichenbach-msu) -- [971](https://github.com/tardis-sn/tardis/pull/971) Fix formal integral spikes bug (971) (@chvogl) -- [968](https://github.com/tardis-sn/tardis/pull/968) Fixed GUI #950 tardis/gui/widgets.py (968) (@marxwillia) -- [965](https://github.com/tardis-sn/tardis/pull/965) Isotope time0 (965) (@marxwillia) -- [966](https://github.com/tardis-sn/tardis/pull/966) fix AtomData repr (966) (@wkerzendorf) -- [964](https://github.com/tardis-sn/tardis/pull/964) Raise error if requested atoms are not in the atomic data (964) (@chvogl) -- [959](https://github.com/tardis-sn/tardis/pull/959) Csvy model config dict (959) (@marxwillia) -- [960](https://github.com/tardis-sn/tardis/pull/960) Save integrated spectrum to hdf if requested (960) (@chvogl) -- [957](https://github.com/tardis-sn/tardis/pull/957) add blondin converter (957) (@wkerzendorf) -- [956](https://github.com/tardis-sn/tardis/pull/956) Dilution factor fix (956) (@marxwillia) -- [953](https://github.com/tardis-sn/tardis/pull/953) add code comparison (953) (@wkerzendorf) -- [952](https://github.com/tardis-sn/tardis/pull/952) Base schema fix (952) (@marxwillia) -- [951](https://github.com/tardis-sn/tardis/pull/951) Documentation restructure (951) (@wkerzendorf) -- [936](https://github.com/tardis-sn/tardis/pull/936) csvy_model (936) (@wkerzendorf) -- [945](https://github.com/tardis-sn/tardis/pull/945) Revert "Remove PR Trigger" (945) (@wkerzendorf) -- [928](https://github.com/tardis-sn/tardis/pull/928) Added csvy parser (928) (@marxwillia) -- [933](https://github.com/tardis-sn/tardis/pull/933) Radiative recombination (933) (@chvogl) ### v3.0-alpha.3 (2019/05/13 18:05) -- [930](https://github.com/tardis-sn/tardis/pull/930) Fix for conda-forge package (930) (@epassaro) -- [918](https://github.com/tardis-sn/tardis/pull/918) Density docs (918) (@marxwillia) -- [926](https://github.com/tardis-sn/tardis/pull/926) Adding a TARDIS data repo (926) (@wkerzendorf) -- [924](https://github.com/tardis-sn/tardis/pull/924) Migrate beta_sobolev calculation from cython to numba (924) (@chvogl) -- [925](https://github.com/tardis-sn/tardis/pull/925) Docs/fix changelog (925) (@wkerzendorf) -- [923](https://github.com/tardis-sn/tardis/pull/923) Fix nlte normalization (923) (@wkerzendorf) -- [831](https://github.com/tardis-sn/tardis/pull/831) Fix NLTE Normalization - issue #784 (831) (@livnehra) -- [922](https://github.com/tardis-sn/tardis/pull/922) Revert "Fix nlte normalization " (922) (@wkerzendorf) -- [920](https://github.com/tardis-sn/tardis/pull/920) Fix nlte normalization (920) (@wkerzendorf) -- [921](https://github.com/tardis-sn/tardis/pull/921) Autoupdate changelog (921) (@wkerzendorf) -- [919](https://github.com/tardis-sn/tardis/pull/919) Add possibility to bias vpacket emission based on optical depth (919) (@chvogl) -- [914](https://github.com/tardis-sn/tardis/pull/914) make GUI python3 compatible (914) (@wkerzendorf) -- [902](https://github.com/tardis-sn/tardis/pull/902) general overhaul of the docs for 3.0 (902) (@wkerzendorf) -- [916](https://github.com/tardis-sn/tardis/pull/916) fix the documenation up a bit (916) (@wkerzendorf) -- [915](https://github.com/tardis-sn/tardis/pull/915) Parsing STELLA files for TARDIS (915) (@sarafina325) -- [911](https://github.com/tardis-sn/tardis/pull/911) Use Russian roulette to kill v-packets with negligible weight (911) (@chvogl) -- [697](https://github.com/tardis-sn/tardis/pull/697) Relativity (697) (@chvogl) ### v3.0-alpha.2 (2019/03/11 10:24) ### v3.0.a1 (2019/03/10 11:03) -- [901](https://github.com/tardis-sn/tardis/pull/901) .nojekyll added to docs (901) (@debajyotidasgupta) -- [897](https://github.com/tardis-sn/tardis/pull/897) add pytest azurepipelines (897) (@wkerzendorf) -- [896](https://github.com/tardis-sn/tardis/pull/896) Adding general build artefacts (896) (@wkerzendorf) -- [894](https://github.com/tardis-sn/tardis/pull/894) Azure pipeline for TARDIS (894) (@wkerzendorf) -- [893](https://github.com/tardis-sn/tardis/pull/893) add doctr to TARDIS (893) (@wkerzendorf) -- [892](https://github.com/tardis-sn/tardis/pull/892) adding azure-pipelines (892) (@wkerzendorf) -- [891](https://github.com/tardis-sn/tardis/pull/891) New template setup from astropy (891) (@wkerzendorf) -- [888](https://github.com/tardis-sn/tardis/pull/888) Update installation.rst (888) (@nileshpatra) -- [886](https://github.com/tardis-sn/tardis/pull/886) Pandas ix fix (886) (@wkerzendorf) -- [879](https://github.com/tardis-sn/tardis/pull/879) Python3 version of TARDIS (879) (@wkerzendorf) -- [881](https://github.com/tardis-sn/tardis/pull/881) Adds description of gcc problem to documentation (881) (@ycamacho) -- [859](https://github.com/tardis-sn/tardis/pull/859) Use interpolated values to do formal integral with more shells (859) (@chvogl) -- [873](https://github.com/tardis-sn/tardis/pull/873) Some small fixes related to the documentation and the building process (Fix #842) (873) (@unoebauer) -- [868](https://github.com/tardis-sn/tardis/pull/868) Add Travis Stages: Activate Integration tests (868) (@unoebauer) -- [866](https://github.com/tardis-sn/tardis/pull/866) Add Travis Caching and separate scripts for CI (866) (@wkerzendorf) -- [869](https://github.com/tardis-sn/tardis/pull/869) Travis update2 (869) (@wkerzendorf) -- [864](https://github.com/tardis-sn/tardis/pull/864) Unify unittest hdfs (864) (@unoebauer) -- [865](https://github.com/tardis-sn/tardis/pull/865) Adding CodeCov integration (865) (@wkerzendorf) -- [860](https://github.com/tardis-sn/tardis/pull/860) Enabling the addition of callbacks in run_tardis (860) (@wkerzendorf) -- [863](https://github.com/tardis-sn/tardis/pull/863) Thomson cross section: Continuation of PR #688 (863) (@unoebauer) -- [850](https://github.com/tardis-sn/tardis/pull/850) Add full test for formal integral method (850) (@unoebauer) -- [861](https://github.com/tardis-sn/tardis/pull/861) Describe refdata update and workflow refactor (861) (@wkerzendorf) -- [848](https://github.com/tardis-sn/tardis/pull/848) Add capability to store information about the plasma state during iterations (848) (@unoebauer) -- [857](https://github.com/tardis-sn/tardis/pull/857) Refactor logging (857) (@wkerzendorf) -- [856](https://github.com/tardis-sn/tardis/pull/856) Extend formal integral to line_interaction_type macroatom (856) (@chvogl) -- [855](https://github.com/tardis-sn/tardis/pull/855) Make the conda-forge channel the only channel (855) (@wkerzendorf) -- [853](https://github.com/tardis-sn/tardis/pull/853) Fix formal integral (853) (@chvogl) -- [849](https://github.com/tardis-sn/tardis/pull/849) Missing refdata (849) (@wkerzendorf) -- [851](https://github.com/tardis-sn/tardis/pull/851) add atomic data description (851) (@wkerzendorf) -- [846](https://github.com/tardis-sn/tardis/pull/846) update the OPENMP text to be correct (846) (@wkerzendorf) -- [847](https://github.com/tardis-sn/tardis/pull/847) Revert "change to new cython version" (847) (@wkerzendorf) -- [839](https://github.com/tardis-sn/tardis/pull/839) change to new cython version (839) (@wkerzendorf) -- [845](https://github.com/tardis-sn/tardis/pull/845) Update Documentation: new location of tardis_example (845) (@unoebauer) -- [843](https://github.com/tardis-sn/tardis/pull/843) Fix issue with custom_composition reader (843) (@unoebauer) -- [844](https://github.com/tardis-sn/tardis/pull/844) Remove bbsampling from schema file (844) (@pfreddy) -- [837](https://github.com/tardis-sn/tardis/pull/837) Add json sphinx (837) (@wkerzendorf) -- [841](https://github.com/tardis-sn/tardis/pull/841) Fixed indentation and position of delta_treatment in plasma/standard_plasmas.py (841) (@Heringer-Epson) -- [838](https://github.com/tardis-sn/tardis/pull/838) fix current cython installation problem (838) (@wkerzendorf) -- [821](https://github.com/tardis-sn/tardis/pull/821) Simplify convergence strategies (821) (@unoebauer) -- [833](https://github.com/tardis-sn/tardis/pull/833) restructure landing page to use notebooks (833) (@wkerzendorf) -- [832](https://github.com/tardis-sn/tardis/pull/832) Fixes #830 (832) (@unoebauer) ### v2.0.2 (2018/06/18 16:24) ### v2_test3 (2018/06/18 16:13) -- [829](https://github.com/tardis-sn/tardis/pull/829) build bleeding edge cython (829) (@wkerzendorf) -- [828](https://github.com/tardis-sn/tardis/pull/828) trying to get travis to build (828) (@wkerzendorf) -- [827](https://github.com/tardis-sn/tardis/pull/827) Update travis link to miniconda (827) (@unoebauer) -- [826](https://github.com/tardis-sn/tardis/pull/826) Remove tardis_example.tar.gz from documentation; fixes #824 (826) (@unoebauer) -- [820](https://github.com/tardis-sn/tardis/pull/820) update of mailmap (820) (@wkerzendorf) -- [819](https://github.com/tardis-sn/tardis/pull/819) Reintroduce and update changelog (819) (@unoebauer) -- [815](https://github.com/tardis-sn/tardis/pull/815) Update and Fix Documentation (815) (@unoebauer) -- [816](https://github.com/tardis-sn/tardis/pull/816) Remove old and broken badges (816) (@unoebauer) -- [814](https://github.com/tardis-sn/tardis/pull/814) Fix numpydoc problem (814) (@unoebauer) -- [813](https://github.com/tardis-sn/tardis/pull/813) Request specific sphinx version (813) (@unoebauer) ### v2.0 (2018/04/05 09:03) -- [812](https://github.com/tardis-sn/tardis/pull/812) Update of documentation (812) (@unoebauer) -- [809](https://github.com/tardis-sn/tardis/pull/809) fix dependencies for tardis conda env (809) (@wkerzendorf) -- [761](https://github.com/tardis-sn/tardis/pull/761) Add caching for integrated spectrum: Fix #760 (761) (@wkerzendorf) -- [715](https://github.com/tardis-sn/tardis/pull/715) Merge 'generate_reference_path' and 'reference_path' in integration tests (bug #672) (715) (@wkerzendorf) -- [801](https://github.com/tardis-sn/tardis/pull/801) Decay of isotopes branch (801) (@wkerzendorf) -- [806](https://github.com/tardis-sn/tardis/pull/806) Fix reference dictionary problem (806) (@wkerzendorf) -- [802](https://github.com/tardis-sn/tardis/pull/802) Fix for PR #801 (802) (@wkerzendorf) -- [772](https://github.com/tardis-sn/tardis/pull/772) [TEP007] CMFGEN density parser (772) (@wkerzendorf) -- [771](https://github.com/tardis-sn/tardis/pull/771) [TEP007] Add cmfgen2tardis script (771) (@wkerzendorf) -- [757](https://github.com/tardis-sn/tardis/pull/757) [TEP007] Decay and merge isotopic abundance dataframe (757) (@wkerzendorf) -- [767](https://github.com/tardis-sn/tardis/pull/767) [TEP007] Docs for isotope config (767) (@wkerzendorf) -- [764](https://github.com/tardis-sn/tardis/pull/764) [TEP007] Isotope stratified file support (764) (@wkerzendorf) -- [762](https://github.com/tardis-sn/tardis/pull/762) [TEP007] Isotope uniform config option (762) (@wkerzendorf) -- [756](https://github.com/tardis-sn/tardis/pull/756) [TEP007] [WIP] Isotope Abundances class (756) (@wkerzendorf) -- [803](https://github.com/tardis-sn/tardis/pull/803) include yml files in MANIFEST (803) (@wkerzendorf) -- [799](https://github.com/tardis-sn/tardis/pull/799) tardis/plasma/standard_plasmas.py: old database files warning (799) (@wkerzendorf) -- [797](https://github.com/tardis-sn/tardis/pull/797) Minor Updates: Fixes for #521 and #699 (797) (@wkerzendorf) -- [796](https://github.com/tardis-sn/tardis/pull/796) Prevent pandas SettingWithCopyWarning by copying DataFrames when slicing (796) (@wkerzendorf) -- [795](https://github.com/tardis-sn/tardis/pull/795) Force deactivate LaTeX in GUI - Fix #441 (795) (@wkerzendorf) -- [793](https://github.com/tardis-sn/tardis/pull/793) Add pyside to requirements (needed for GUI) (793) (@wkerzendorf) -- [794](https://github.com/tardis-sn/tardis/pull/794) add new readthedocs.yml (794) (@wkerzendorf) -- [792](https://github.com/tardis-sn/tardis/pull/792) Fix compatibility with networkx 2.0 (792) (@wkerzendorf) -- [791](https://github.com/tardis-sn/tardis/pull/791) Propagate changes to the line index into the GUI code (791) (@wkerzendorf) -- [786](https://github.com/tardis-sn/tardis/pull/786) The final carsus merge (786) (@wkerzendorf) -- [782](https://github.com/tardis-sn/tardis/pull/782) Plasma write_to_tex/dot unit tests (782) (@wkerzendorf) -- [781](https://github.com/tardis-sn/tardis/pull/781) Omit coverage of test related files (781) (@wkerzendorf) -- [785](https://github.com/tardis-sn/tardis/pull/785) [DOC] Update Running tests doc (785) (@wkerzendorf) -- [774](https://github.com/tardis-sn/tardis/pull/774) Replace Comparison values in Plasma Unit Tests with reference HDF file (774) (@wkerzendorf) -- [780](https://github.com/tardis-sn/tardis/pull/780) LevelBoltzmannFactorNLTE.from_config is now a staticmethod (780) (@wkerzendorf) -- [778](https://github.com/tardis-sn/tardis/pull/778) Fix NLTE (778) (@wkerzendorf) -- [776](https://github.com/tardis-sn/tardis/pull/776) Fix compatibility bug in radiative_properties (776) (@wkerzendorf) -- [779](https://github.com/tardis-sn/tardis/pull/779) Save coverage report when tests use tardis-refdata (779) (@wkerzendorf) -- [775](https://github.com/tardis-sn/tardis/pull/775) Transition from atomic-dataset config option to tardis-refdata (775) (@wkerzendorf) -- [769](https://github.com/tardis-sn/tardis/pull/769) [TEP014] [DOC] Updated to_hdf notebook (769) (@wkerzendorf) -- [759](https://github.com/tardis-sn/tardis/pull/759) Formal Integral: including electron scattering (759) (@wkerzendorf) -- [768](https://github.com/tardis-sn/tardis/pull/768) [TEP014] Simulation HDF and deprecated to_hdf cleanup. (768) (@wkerzendorf) -- [773](https://github.com/tardis-sn/tardis/pull/773) Update Documentation (773) (@wkerzendorf) -- [752](https://github.com/tardis-sn/tardis/pull/752) [TEP014] PlasmaWriterMixin (752) (@wkerzendorf) -- [748](https://github.com/tardis-sn/tardis/pull/748) [TEP014] Update Runner and Spectrum classes to use HDFWriter + Unit Tests (748) (@wkerzendorf) -- [765](https://github.com/tardis-sn/tardis/pull/765) Attempt to fix up the GUI (765) (@wkerzendorf) -- [758](https://github.com/tardis-sn/tardis/pull/758) Add new version to tardis_env27 and add pyne (758) (@wkerzendorf) -- [753](https://github.com/tardis-sn/tardis/pull/753) [TEP014][DOC] HDFWriter Documentation (753) (@wkerzendorf) -- [740](https://github.com/tardis-sn/tardis/pull/740) [GSoC] Formal integral Project (740) (@wkerzendorf) -- [750](https://github.com/tardis-sn/tardis/pull/750) [TEP005][QOL] Add MontecarloRunner.spectrum_integrated (750) (@wkerzendorf) -- [745](https://github.com/tardis-sn/tardis/pull/745) [TEP005][DOC] Documentation (745) (@wkerzendorf) -- [746](https://github.com/tardis-sn/tardis/pull/746) [TEP005][CONFIG] Prevent incompatible configurations (746) (@wkerzendorf) -- [741](https://github.com/tardis-sn/tardis/pull/741) Add unit tests for the formal integral (741) (@wkerzendorf) -- [747](https://github.com/tardis-sn/tardis/pull/747) [TEP014] Update Model and Density classes to use HDFWriter + Unit Tests (747) (@wkerzendorf) -- [749](https://github.com/tardis-sn/tardis/pull/749) [TEP014] Change name of HDFWriter to HDFWriterMixin (749) (@wkerzendorf) -- [751](https://github.com/tardis-sn/tardis/pull/751) [QOL] Add default axis to TARDISSpectrum.plot (751) (@wkerzendorf) -- [743](https://github.com/tardis-sn/tardis/pull/743) Fix bug in plasma (743) (@wkerzendorf) -- [744](https://github.com/tardis-sn/tardis/pull/744) [TEP014] Added HDFWriter class + Unit Tests (744) (@wkerzendorf) -- [742](https://github.com/tardis-sn/tardis/pull/742) Fix clash in RTD dependencies (742) (@wkerzendorf) -- [735](https://github.com/tardis-sn/tardis/pull/735) Move common ctest fixtures into conftest.py (735) (@wkerzendorf) -- [729](https://github.com/tardis-sn/tardis/pull/729) Refactor spectrum (729) (@wkerzendorf) -- [730](https://github.com/tardis-sn/tardis/pull/730) Fix test_plasma_simple not skipping properly (730) (@wkerzendorf) -- [712](https://github.com/tardis-sn/tardis/pull/712) Colorize Logger (712) (@wkerzendorf) -- [718](https://github.com/tardis-sn/tardis/pull/718) Unit test for untested method of montecarlo simulation code (718) (@unoebauer) -- [724](https://github.com/tardis-sn/tardis/pull/724) Rebase PR #678 (724) (@wkerzendorf) -- [709](https://github.com/tardis-sn/tardis/pull/709) Add note about broken GUI to docu (709) (@wkerzendorf) -- [708](https://github.com/tardis-sn/tardis/pull/708) Add new installation instructions (708) (@wkerzendorf) -- [704](https://github.com/tardis-sn/tardis/pull/704) Fix ignoring model tests (704) (@wkerzendorf) -- [700](https://github.com/tardis-sn/tardis/pull/700) Add contributing guidelines (700) (@wkerzendorf) -- [686](https://github.com/tardis-sn/tardis/pull/686) converted spectrum_frequency (686) (@wkerzendorf) -- [696](https://github.com/tardis-sn/tardis/pull/696) Add missing diagnostics property to runner's to_hdf list (696) (@wkerzendorf) -- [694](https://github.com/tardis-sn/tardis/pull/694) Significantly reduce peak memory usage when vpacket logging is enabled (694) (@wkerzendorf) -- [682](https://github.com/tardis-sn/tardis/pull/682) Import montecarlo.base in the __init__ module of the package. (682) (@wkerzendorf) -- [670](https://github.com/tardis-sn/tardis/pull/670) Integrate continuum interactions into cmontecarlo (670) (@wkerzendorf) -- [652](https://github.com/tardis-sn/tardis/pull/652) [TEP006] Aggregate TARDIS restructure and configuration system cleanup (652) (@wkerzendorf) -- [677](https://github.com/tardis-sn/tardis/pull/677) Update link to tardis_example.yml in documentation - Fix #676 (677) (@wkerzendorf) -- [674](https://github.com/tardis-sn/tardis/pull/674) Change matplotlib backend - fix test_integration remote plotting issue (674) (@yeganer) -- [664](https://github.com/tardis-sn/tardis/pull/664) Kd final test (664) (@wkerzendorf) -- [668](https://github.com/tardis-sn/tardis/pull/668) change to tardis atom data on git lfs (668) (@wkerzendorf) -- [666](https://github.com/tardis-sn/tardis/pull/666) Remove News from main TARDIS github page (666) (@wkerzendorf) -- [667](https://github.com/tardis-sn/tardis/pull/667) Update SOCIS and GSOC students credits (667) (@wkerzendorf) -- [665](https://github.com/tardis-sn/tardis/pull/665) Add to_hdf compression (665) (@wkerzendorf) -- [663](https://github.com/tardis-sn/tardis/pull/663) Develop (663) (@wkerzendorf) -- [507](https://github.com/tardis-sn/tardis/pull/507) Unit tests for untested methods of tardis/util.py (507) (@) -- [657](https://github.com/tardis-sn/tardis/pull/657) Require pyyaml 3.12 (657) (@wkerzendorf) -- [659](https://github.com/tardis-sn/tardis/pull/659) Update installation docs (659) (@wkerzendorf) -- [653](https://github.com/tardis-sn/tardis/pull/653) Facility to provide per-setup atom data as well as save report locally. (653) (@wkerzendorf) -- [641](https://github.com/tardis-sn/tardis/pull/641) Fix detailed radiative rates (641) (@wkerzendorf) -- [642](https://github.com/tardis-sn/tardis/pull/642) Use pytest-html==1.10.0, modify DokuReport class accordingly. (642) (@wkerzendorf) -- [630](https://github.com/tardis-sn/tardis/pull/630) Create an overview page on Dokuwiki. (630) (@yeganer) -- [620](https://github.com/tardis-sn/tardis/pull/620) Runner script to automate execution of integration tests. (620) (@wkerzendorf) -- [628](https://github.com/tardis-sn/tardis/pull/628) Remove exponent property from yaml files with exponential density (628) (@wkerzendorf) -- [626](https://github.com/tardis-sn/tardis/pull/626) Revert "Add exponent as a property for exponential density" (626) (@wkerzendorf) -- [542](https://github.com/tardis-sn/tardis/pull/542) Updates to He NLTE treatment. (542) (@wkerzendorf) -- [612](https://github.com/tardis-sn/tardis/pull/612) Add facility to generate and accept HDF files as reference data for Integration Tests. (612) (@wkerzendorf) -- [614](https://github.com/tardis-sn/tardis/pull/614) Omit the integration_tests when running coveralls (614) (@wkerzendorf) -- [619](https://github.com/tardis-sn/tardis/pull/619) Fixed incorrect name in error message (619) (@wkerzendorf) -- [618](https://github.com/tardis-sn/tardis/pull/618) to_hdf: If only the last run is stored, do not add a counter in the name (618) (@wkerzendorf) -- [617](https://github.com/tardis-sn/tardis/pull/617) Add a to_hdf method on TARDISSpectrum (617) (@wkerzendorf) -- [600](https://github.com/tardis-sn/tardis/pull/600) Parametrize the Slow Test class with two setups. (600) (@wkerzendorf) -- [613](https://github.com/tardis-sn/tardis/pull/613) Fix bug in montecarlo.pyx (613) (@wkerzendorf) -- [595](https://github.com/tardis-sn/tardis/pull/595) Line absorption rate estimator (595) (@wkerzendorf) -- [606](https://github.com/tardis-sn/tardis/pull/606) Merge to_hdf (606) (@wkerzendorf) -- [597](https://github.com/tardis-sn/tardis/pull/597) Use abundances, densities filepaths relative to w7 config file. (597) (@wkerzendorf) -- [569](https://github.com/tardis-sn/tardis/pull/569) Added a conda environment for tardis (569) (@wkerzendorf) -- [565](https://github.com/tardis-sn/tardis/pull/565) Change the way AtomData quantities are initialized (565) (@wkerzendorf) -- [599](https://github.com/tardis-sn/tardis/pull/599) Update the tardis_example tar file provided in the documentation. (599) (@wkerzendorf) -- [598](https://github.com/tardis-sn/tardis/pull/598) Fix convergence handling in run_legacy_simulation - fix issue #593 (598) (@wkerzendorf) -- [590](https://github.com/tardis-sn/tardis/pull/590) Link images of comparison plots in DokuReport using hookwrapper. (590) (@wkerzendorf) -- [591](https://github.com/tardis-sn/tardis/pull/591) Fix path of CSS and JS files used in html report. (591) (@wkerzendorf) -- [594](https://github.com/tardis-sn/tardis/pull/594) Provide tardis.yaml_load shortcut (594) (@wkerzendorf) -- [592](https://github.com/tardis-sn/tardis/pull/592) Fix virt energy (592) (@wkerzendorf) -- [583](https://github.com/tardis-sn/tardis/pull/583) Subclass pytest-html's HTMLReport to DokuReport class for report generation and upload. (583) (@yeganer) -- [588](https://github.com/tardis-sn/tardis/pull/588) Embed comparison plots in Dokuwiki Report. (588) (@) -- [587](https://github.com/tardis-sn/tardis/pull/587) Move the three spectra attributes from Radial1DModel to MontecarloRunner (587) (@wkerzendorf) -- [578](https://github.com/tardis-sn/tardis/pull/578) Shift slow test related pytest hooks in lower level conftest.py (578) (@) -- [581](https://github.com/tardis-sn/tardis/pull/581) Update several files to match package_template (581) (@yeganer) -- [576](https://github.com/tardis-sn/tardis/pull/576) [config-system] Validator rewrite: Use jsonschema (576) (@wkerzendorf) -- [549](https://github.com/tardis-sn/tardis/pull/549) [TEP006] Create a JSON schema in YAML to replace the old tardis_config_definition.yml (549) (@ftsamis) -- [575](https://github.com/tardis-sn/tardis/pull/575) Replace misused calls to yaml.load with a helper function. (575) (@wkerzendorf) -- [570](https://github.com/tardis-sn/tardis/pull/570) Enable generation of html report of integration tests, and upload to dokuwiki. (570) (@wkerzendorf) -- [574](https://github.com/tardis-sn/tardis/pull/574) tardis/base.py: Remove duplicate code from run_tardis (574) (@wkerzendorf) -- [573](https://github.com/tardis-sn/tardis/pull/573) io/util.py (YAMLLoader): Use OrderedDict to store loaded YAML (573) (@wkerzendorf) -- [572](https://github.com/tardis-sn/tardis/pull/572) Change the way YAMLLoader resolves some properties (572) (@wkerzendorf) -- [532](https://github.com/tardis-sn/tardis/pull/532) Documentation overhaul (532) (@wkerzendorf) -- [571](https://github.com/tardis-sn/tardis/pull/571) [config] Set the exponent property as mandatory when density is exponential (571) (@ftsamis) -- [566](https://github.com/tardis-sn/tardis/pull/566) Initial laydown of comparison plots for TestW7. (566) (@) -- [567](https://github.com/tardis-sn/tardis/pull/567) Accept keyword arguments for Configuration.from_yaml (567) (@wkerzendorf) -- [561](https://github.com/tardis-sn/tardis/pull/561) TestW7: Assertions for spectrum quantities, fixture for handling baseline data. (561) (@wkerzendorf) -- [515](https://github.com/tardis-sn/tardis/pull/515) [config-system] Add a custom YAML Loader to parse astropy quantities (515) (@wkerzendorf) -- [555](https://github.com/tardis-sn/tardis/pull/555) Use pytest's monkeypatch.chdir to change the working directory in the config_reader tests (555) (@wkerzendorf) -- [558](https://github.com/tardis-sn/tardis/pull/558) Integration Test class for Stratified W7 setup. (558) (@wkerzendorf) -- [557](https://github.com/tardis-sn/tardis/pull/557) Enable skipping slow tests. (557) (@unoebauer) -- [544](https://github.com/tardis-sn/tardis/pull/544) Continue cmontecarlo tests refactor. Extend #530. (544) (@unoebauer) -- [543](https://github.com/tardis-sn/tardis/pull/543) Fix issue #535: Treat rel. paths inside config relative to the config file (543) (@wkerzendorf) -- [551](https://github.com/tardis-sn/tardis/pull/551) Add SOCIS 2016 advertisement (551) (@wkerzendorf) -- [547](https://github.com/tardis-sn/tardis/pull/547) Fix Issue #548 (547) (@wkerzendorf) -- [545](https://github.com/tardis-sn/tardis/pull/545) added mailmap to compile the commits for each person (545) (@wkerzendorf) -- [539](https://github.com/tardis-sn/tardis/pull/539) Adding OSX to our travis build (539) (@wkerzendorf) -- [541](https://github.com/tardis-sn/tardis/pull/541) Move progress bar update after calculation (541) (@yeganer) -- [540](https://github.com/tardis-sn/tardis/pull/540) Mirroring C enums in Python for CMontecarlo tests. (540) (@yeganer) -- [538](https://github.com/tardis-sn/tardis/pull/538) Upgrading to the new Readthedocs infrastructure (538) (@wkerzendorf) -- [530](https://github.com/tardis-sn/tardis/pull/530) Refactor cmontecarlo tests for exercising parametrization. (530) (@yeganer) -- [537](https://github.com/tardis-sn/tardis/pull/537) Ignore invalid OpenMP nthreads values (537) (@yeganer) -- [527](https://github.com/tardis-sn/tardis/pull/527) Unit tests for untested methods of tardis/atomic.py (527) (@) -- [533](https://github.com/tardis-sn/tardis/pull/533) Remove rpacket.recently_crossed_boundary flag (533) (@wkerzendorf) -- [514](https://github.com/tardis-sn/tardis/pull/514) Performance (514) (@wkerzendorf) -- [531](https://github.com/tardis-sn/tardis/pull/531) Organize headers in C-Extension (531) (@wkerzendorf) -- [526](https://github.com/tardis-sn/tardis/pull/526) Docs: Include conda-requirements in installation.rst (526) (@ssim) ### v1.0.1 (2015/03/03 08:12) ### v1.0 (2015/03/03 07:58) ### 1.0rc3 (2015/03/03 07:54) diff --git a/README.rst b/README.rst index 2526553eab3..fe1b070fbbc 100644 --- a/README.rst +++ b/README.rst @@ -21,8 +21,8 @@ stars (*supernovae*). .. image:: https://codecov.io/gh/tardis-sn/tardis/branch/master/graph/badge.svg :target: https://codecov.io/gh/tardis-sn/tardis -.. image:: https://github.com/tardis-sn/tardis/actions/workflows/docstr-cov.yml/badge.svg - :target: https://github.com/tardis-sn/tardis/actions/workflows/docstr-cov.yml +.. image:: https://img.shields.io/endpoint?url=https://jsonbin.org/tardis-bot/tardis/badges/docstr-cov + :target: https://github.com/tardis-sn/tardis/actions/workflows/docstr-cov.yml?query=branch%3Amaster .. image:: https://github.com/tardis-sn/tardis/actions/workflows/tests.yml/badge.svg :target: https://github.com/tardis-sn/tardis/actions/workflows/tests.yml