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modules.json
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modules.json
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{
"name": "nf-core/rnaseq",
"homePage": "https://github.com/nf-core/rnaseq",
"repos": {
"nf-core/modules": {
"bbmap/bbsplit": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"cat/fastq": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"custom/dumpsoftwareversions": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"custom/getchromsizes": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"fastqc": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"gffread": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"gunzip": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"hisat2/align": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"hisat2/build": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"hisat2/extractsplicesites": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"picard/markduplicates": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"preseq/lcextrap": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"qualimap/rnaseq": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"rsem/calculateexpression": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rsem/preparereference": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/bamstat": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/inferexperiment": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/innerdistance": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/junctionannotation": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/junctionsaturation": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/readdistribution": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/readduplication": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/tin": {
"git_sha": "4dbc166a7c30e963511fb5c9870fbcaa158a53a9"
},
"salmon/index": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"salmon/quant": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"samtools/flagstat": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"samtools/idxstats": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"samtools/index": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"samtools/sort": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"samtools/stats": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"sortmerna": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"stringtie/stringtie": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"subread/featurecounts": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"trimgalore": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"ucsc/bedclip": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"ucsc/bedgraphtobigwig": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"umitools/dedup": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"umitools/extract": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"untar": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
}
}
}
}