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vcfcluster reporting LEN=0 for all variants #37

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RCollins13 opened this issue Dec 11, 2017 · 0 comments
Open

vcfcluster reporting LEN=0 for all variants #37

RCollins13 opened this issue Dec 11, 2017 · 0 comments

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@RCollins13
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Continued from a discussion from Slack.

I'm encountering an issue where standardized Manta VCFs aren't able to be clustered by vcfcluster, and instead each SV-sample pair is being reported as single record in the output clustered vcf with LEN=0.

I've moved two example input VCFs to ERISOne here:
/scratch/miket/rlc47temp/vcfcluster_debug/

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