From 55149f98c028e10eca738592892d3c9dcc746e3e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20David=20M=C3=BCller?= Date: Wed, 27 Mar 2024 06:49:53 +0100 Subject: [PATCH] remove cache --- pages/FileUpload.py | 2 +- src/masstable.py | 4 ++-- src/sequence.py | 4 ++-- 3 files changed, 5 insertions(+), 5 deletions(-) diff --git a/pages/FileUpload.py b/pages/FileUpload.py index 33132fa..ceafc47 100644 --- a/pages/FileUpload.py +++ b/pages/FileUpload.py @@ -23,7 +23,7 @@ def initializeWorkspace(input_types, parsed_df_types): if df_type not in st.session_state: st.session_state[df_type] = {} -@st.cache_data +#@st.cache_data def getUploadedFileDF(deconv_files, anno_files, tag_files, db_files): # leave only names deconv_files = [Path(f).name for f in deconv_files] diff --git a/src/masstable.py b/src/masstable.py index 9824401..5d1ed33 100644 --- a/src/masstable.py +++ b/src/masstable.py @@ -180,7 +180,7 @@ def parseFLASHDeconvOutput(annotated, deconvolved, tags, proteins): df['Scan'] = scans return df, annotateddf, tolerance, massoffset, chargemass, tag_df, protein_df -@st.cache_data +#@st.cache_data def getSpectraTableDF(deconv_df: pd.DataFrame): out_df = deconv_df[['Scan', 'MSLevel', 'RT', 'PrecursorMass']].copy() out_df['#Masses'] = [len(ele) for ele in deconv_df['MinCharges']] @@ -188,7 +188,7 @@ def getSpectraTableDF(deconv_df: pd.DataFrame): return out_df -@st.cache_data +#@st.cache_data def getMSSignalDF(anno_df: pd.DataFrame): ints = np.concatenate([anno_df.loc[index, "intarray"] for index in anno_df.index]) mzs = np.concatenate([anno_df.loc[index, "mzarray"] for index in anno_df.index]) diff --git a/src/sequence.py b/src/sequence.py index 33af680..75838b6 100644 --- a/src/sequence.py +++ b/src/sequence.py @@ -76,7 +76,7 @@ def setFixedModification(protein): return protein, fixed_mod_site -@st.cache_data +#@st.cache_data def getFragmentDataFromSeq(sequence, coverage, maxCoverage): protein = AASequence.fromString(sequence) protein, fixed_mods = setFixedModification(protein) # handling fixed modifications @@ -156,7 +156,7 @@ def getInternalFragmentMassesWithSeq(sequence, res_type): return masses, start_indices, end_indices -@st.cache_data +รค@st.cache_data def getInternalFragmentDataFromSeq(sequence): # TODO: fixed modification # protein = AASequence.fromString(sequence)