From 0f9c02f3a98ad0d1864747dfbb3f4d354ad3c6ca Mon Sep 17 00:00:00 2001 From: evaliu2002 Date: Tue, 17 Oct 2023 13:54:04 -0700 Subject: [PATCH] include libsbml dependency --- vscode-antimony/src/server/virtualEnvIntelMac.sh | 2 +- vscode-antimony/src/server/virtualEnvLinux.sh | 2 +- vscode-antimony/src/server/virtualEnvSilicon.sh | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/vscode-antimony/src/server/virtualEnvIntelMac.sh b/vscode-antimony/src/server/virtualEnvIntelMac.sh index e42ff4ef..1dddde70 100644 --- a/vscode-antimony/src/server/virtualEnvIntelMac.sh +++ b/vscode-antimony/src/server/virtualEnvIntelMac.sh @@ -15,7 +15,7 @@ ve() { sudo -u $USER "$PYTHON39_PATH" -m venv $HOME/${venv} --system-site-package - echo $'appdirs==1.4.4\ncertifi==2020.12.5\nchardet==4.0.0\ncolorama==0.4.4\ncolorlog==4.8.0 \neasydev==0.11.0\nidna==2.10\ngit+https://github.com/lark-parser/lark.git@5b8c04ca83b9#egg=lark_parser\nlibChEBIpy==1.0.10\npexpect==4.8.0\nptyprocess==0.7.0\npygls==0.9.1\nrequests==2.25.1\nrequests-cache==0.5.2\nsix==1.15.0\nurllib3==1.26.4\nantimony\nbioservices==1.8.3\n==0.0.9\norjson==3.8.0' > $HOME/${venv}/all-requirements.txt + echo $'appdirs==1.4.4\ncertifi==2020.12.5\nchardet==4.0.0\ncolorama==0.4.4\ncolorlog==4.8.0 \neasydev==0.11.0\nidna==2.10\ngit+https://github.com/lark-parser/lark.git@5b8c04ca83b9#egg=lark_parser\nlibChEBIpy==1.0.10\npexpect==4.8.0\nptyprocess==0.7.0\npygls==0.9.1\nrequests==2.25.1\nrequests-cache==0.5.2\nsix==1.15.0\nurllib3==1.26.4\nantimony\nbioservices==1.8.3\n==0.0.9\norjson==3.8.0\nlibsbml' > $HOME/${venv}/all-requirements.txt # Install each dependency one at a time while IFS= read -r dependency; do diff --git a/vscode-antimony/src/server/virtualEnvLinux.sh b/vscode-antimony/src/server/virtualEnvLinux.sh index 8d020854..c724328c 100644 --- a/vscode-antimony/src/server/virtualEnvLinux.sh +++ b/vscode-antimony/src/server/virtualEnvLinux.sh @@ -8,7 +8,7 @@ ve() { python3 -m venv $HOME/${venv} --system-site-package - echo $'appdirs==1.4.4\ncertifi==2020.12.5\nchardet==4.0.0\ncolorama==0.4.4\ncolorlog==4.8.0 \neasydev==0.11.0\nidna==2.10\ngit+https://github.com/lark-parser/lark.git@5b8c04ca83b9#egg=lark_parser\nlibChEBIpy==1.0.10\npexpect==4.8.0\nptyprocess==0.7.0\npygls==0.9.1\nrequests==2.25.1\nrequests-cache==0.5.2\nsix==1.15.0\nurllib3==1.26.4\nantimony\nbioservices==1.8.3\n==0.0.9\norjson==3.8.0' > $HOME/${venv}/all-requirements.txt + echo $'appdirs==1.4.4\ncertifi==2020.12.5\nchardet==4.0.0\ncolorama==0.4.4\ncolorlog==4.8.0 \neasydev==0.11.0\nidna==2.10\ngit+https://github.com/lark-parser/lark.git@5b8c04ca83b9#egg=lark_parser\nlibChEBIpy==1.0.10\npexpect==4.8.0\nptyprocess==0.7.0\npygls==0.9.1\nrequests==2.25.1\nrequests-cache==0.5.2\nsix==1.15.0\nurllib3==1.26.4\nantimony\nbioservices==1.8.3\n==0.0.9\norjson==3.8.0\nlibsbml' > $HOME/${venv}/all-requirements.txt total_steps=$(wc -l < $HOME/${venv}/all-requirements.txt) current_step=0 diff --git a/vscode-antimony/src/server/virtualEnvSilicon.sh b/vscode-antimony/src/server/virtualEnvSilicon.sh index 2ebc611c..f6b9211e 100644 --- a/vscode-antimony/src/server/virtualEnvSilicon.sh +++ b/vscode-antimony/src/server/virtualEnvSilicon.sh @@ -14,7 +14,7 @@ ve() { sudo -u $USER python3 -m venv $HOME/${venv} --system-site-package - echo $'appdirs==1.4.4\ncertifi==2020.12.5\nchardet==4.0.0\ncolorama==0.4.4\ncolorlog==4.8.0 \neasydev==0.11.0\nidna==2.10\ngit+https://github.com/lark-parser/lark.git@5b8c04ca83b9#egg=lark_parser\nlibChEBIpy==1.0.10\npexpect==4.8.0\nptyprocess==0.7.0\npygls==0.9.1\nrequests==2.25.1\nrequests-cache==0.5.2\nsix==1.15.0\nurllib3==1.26.4\nantimony\nbioservices==1.8.3\n==0.0.9\norjson==3.8.0' > $HOME/${venv}/all-requirements.txt + echo $'appdirs==1.4.4\ncertifi==2020.12.5\nchardet==4.0.0\ncolorama==0.4.4\ncolorlog==4.8.0 \neasydev==0.11.0\nidna==2.10\ngit+https://github.com/lark-parser/lark.git@5b8c04ca83b9#egg=lark_parser\nlibChEBIpy==1.0.10\npexpect==4.8.0\nptyprocess==0.7.0\npygls==0.9.1\nrequests==2.25.1\nrequests-cache==0.5.2\nsix==1.15.0\nurllib3==1.26.4\nantimony\nbioservices==1.8.3\n==0.0.9\norjson==3.8.0\nlibsbml' > $HOME/${venv}/all-requirements.txt total_steps=$(wc -l < $HOME/${venv}/all-requirements.txt) current_step=0