From dca64adba1ef02bc7e4af5a29d1c88611efe568e Mon Sep 17 00:00:00 2001
From: Lucian Smith <lpsmith@uw.edu>
Date: Tue, 4 Jun 2024 16:51:49 -0700
Subject: [PATCH] Rename moved from yml file.

Don't need the try/except around the original rename; it's the first pass.
---
 fix_manual_corrections.yml | 3 ---
 rename_sbml_files.py       | 7 ++-----
 2 files changed, 2 insertions(+), 8 deletions(-)

diff --git a/fix_manual_corrections.yml b/fix_manual_corrections.yml
index 16f8fc035..31d0b361e 100644
--- a/fix_manual_corrections.yml
+++ b/fix_manual_corrections.yml
@@ -391,9 +391,6 @@ BIOMD0000000683:
   - filename: 'MODEL1006230062.sedml'
     type: 'rename_file'
     new: 'BIOMD0000000683.sedml'
-  - filename: 'MODEL1006230062.xml'
-    type: 'rename_file'
-    new: 'BIOMD0000000683.xml'
   - filename: 'BIOMD0000000683.sedml'
     type: replace_text
     old: source="MODEL1006230062.xml"
diff --git a/rename_sbml_files.py b/rename_sbml_files.py
index 8df13b3c0..01d684c30 100644
--- a/rename_sbml_files.py
+++ b/rename_sbml_files.py
@@ -49,11 +49,8 @@ def run(id, sbml_filenames, sbml_master):
                 os.rename(filename, newfilename)
                 remove_list.append((filename, newfilename))
         for (old, new) in remove_list:
-            try:
-                sbml_filenames.remove(old)
-                sbml_filenames.append(new)
-            except:
-                pass
+            sbml_filenames.remove(old)
+            sbml_filenames.append(new)
     if id in REMOVE:
         old = REMOVE[id]
         if sbml_master == old: