diff --git a/CMakeLists.txt b/CMakeLists.txt index 7b6c595f45..b60dbb1d13 100755 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -305,6 +305,7 @@ add_subdirectory(wrappers) if(BUILD_TESTS AND BUILD_TEST_TOOLS) message(STATUS "building tests") + file( COPY testing DESTINATION ${CMAKE_CURRENT_BINARY_DIR} ) add_subdirectory(testing) add_subdirectory(autotest) else() diff --git a/autotest/CMakeLists.txt b/autotest/CMakeLists.txt index f9ebaa7888..98a88d8d1c 100644 --- a/autotest/CMakeLists.txt +++ b/autotest/CMakeLists.txt @@ -7,8 +7,13 @@ # @author JKM(0u812) # @date 07/01/2015 # @copyright Apache License, Version 2.0 -# @brief Automated unit tests +# @brief Unit tests +# @details Tests can be run via ctest -VV +# compiled test suite, including SBML benchmark +add_subdirectory(compiled-test-suite) + +# performance benchmark (adapted from published benchmark in bioinformatics, 2015) if(BUILD_PYTHON) file(COPY python-benchmark-bioinf DESTINATION .) diff --git a/autotest/compiled-test-suite/CMakeLists.txt b/autotest/compiled-test-suite/CMakeLists.txt new file mode 100644 index 0000000000..20e0266f7e --- /dev/null +++ b/autotest/compiled-test-suite/CMakeLists.txt @@ -0,0 +1,19 @@ +# == PREAMBLE ================================================ +# * Licensed under the Apache License, Version 2.0; see README + +# == FILEDOC ================================================= + +# @file autotest/CMakeLists.txt +# @author JKM(0u812) +# @date 11/17/2015 +# @copyright Apache License, Version 2.0 +# @brief Compiled unit tests + +if(WIN32) + set(RUN_TEST_SUITE_EXE_NAME "run_test_suite.exe") +else() + set(RUN_TEST_SUITE_EXE_NAME "run_test_suite") +endif() + +add_test(NAME CompiledTestSuite + COMMAND ${CMAKE_BINARY_DIR}/bin/${RUN_TEST_SUITE_EXE_NAME} -c llvm -m ${CMAKE_SOURCE_DIR}/models/sbml-test-suite -r results.xml >log 2>&1) \ No newline at end of file diff --git a/models/sbml-test-suite/cases/semantic/.cases-archive-date b/models/sbml-test-suite/cases/semantic/.cases-archive-date new file mode 100644 index 0000000000..bbca5098ea --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/.cases-archive-date @@ -0,0 +1 @@ +2014-10-22 diff --git a/models/sbml-test-suite/cases/semantic/.cases-tags-map b/models/sbml-test-suite/cases/semantic/.cases-tags-map new file mode 100644 index 0000000000..4c8a441ff0 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/.cases-tags-map @@ -0,0 +1,1197 @@ +0D-Compartment AlgebraicRule Amount AssignedConstantStoichiometry AssignedVariableStoichiometry AssignmentRule BoundaryCondition CSymbolAvogadro CSymbolDelay CSymbolTime Compartment Concentration ConstantSpecies ConversionFactors EventIsNotPersistent EventIsPersistent EventNoDelay EventPriority EventT0Firing EventUsesAssignmentTimeValues EventUsesTriggerTimeValues EventWithDelay FastReaction FunctionDefinition HasOnlySubstanceUnits InitialAssignment InitialValueReassigned LocalParameters MultiCompartment NonConstantCompartment NonConstantParameter NonUnityCompartment NonUnityStoichiometry Parameter RandomEventExecution RateRule Reaction ReversibleReaction Species SpeciesReferenceInMath StoichiometryMath comp:ConversionFactor comp:Deletion comp:ExtentConversionFactor comp:ExternalModelDefinition comp:ModelDefinition comp:Port comp:ReplacedBy comp:ReplacedElement comp:SBaseRef comp:Submodel comp:SubmodelOutput comp:TimeConversionFactor fbc:BoundEqual fbc:BoundGreaterEqual fbc:BoundLessEqual fbc:FluxBound fbc:FluxObjective fbc:MaximizeObjective fbc:MinimizeObjective fbc:Objective +00001 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00002 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00003 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00004 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00005 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00006 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00007 Compartment Species Reaction Parameter Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00008 Compartment Species Reaction Parameter Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00009 Compartment Species Reaction Parameter Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00010 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00011 Compartment Species Reaction Parameter Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00012 Compartment Species Reaction Parameter Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00013 Compartment Species Reaction Parameter Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00014 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00015 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00016 Compartment Species Reaction Parameter Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00017 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00018 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00019 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00020 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00021 Compartment Species Reaction Parameter Amount NonUnityCompartment NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00022 Compartment Species Reaction Parameter Amount NonUnityCompartment NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00023 Compartment Species Reaction Parameter Amount ConstantSpecies BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00024 Compartment Species Reaction Parameter Amount ConstantSpecies BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00025 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00026 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00027 Compartment Species Reaction InitialAssignment Amount NonUnityCompartment LocalParameters InitialValueReassigned 2.2 2.3 2.4 3.1 +00028 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00029 Compartment Species AssignmentRule Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00030 Compartment Species AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00031 Compartment Species RateRule Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00032 Compartment Species Parameter RateRule Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00033 Compartment Species Reaction Parameter RateRule Amount NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00034 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00035 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00036 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00037 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00038 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00039 Compartment Species Reaction Parameter AlgebraicRule Amount 2.1 2.2 2.3 2.4 3.1 +00040 Compartment Species Parameter AlgebraicRule RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00041 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00042 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00043 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00044 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00045 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00046 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00047 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00048 Compartment Species Reaction Parameter Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00049 Compartment Species Reaction Parameter Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00050 Compartment Species Reaction Parameter Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00051 Compartment Species Reaction Parameter RateRule Amount NonConstantCompartment NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00052 Compartment Species Reaction Parameter RateRule Amount NonConstantCompartment NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00053 Compartment Species Reaction Parameter RateRule Amount NonConstantCompartment NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00054 Compartment Species Reaction Parameter Amount MultiCompartment NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00055 Compartment Species Reaction Parameter Amount MultiCompartment NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00056 Compartment Species Reaction Parameter Amount MultiCompartment ReversibleReaction 1.2 2.1 2.2 2.3 2.4 3.1 +00057 Compartment Species Reaction Amount LocalParameters 1.2 2.1 2.2 2.3 2.4 3.1 +00058 Compartment Species Reaction Parameter Amount LocalParameters 1.2 2.1 2.2 2.3 2.4 3.1 +00059 Compartment Species Reaction Parameter Amount LocalParameters 1.2 2.1 2.2 2.3 2.4 3.1 +00060 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00061 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00062 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00063 Compartment Species Reaction Parameter Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00064 Compartment Species Reaction Parameter Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00065 Compartment Species Reaction Parameter Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00066 Compartment Species Reaction Parameter RateRule Amount NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00067 Compartment Species Reaction Parameter RateRule Amount NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00068 StoichiometryMath Compartment Species Reaction Parameter Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00069 StoichiometryMath Compartment Species Reaction Parameter Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00070 StoichiometryMath Compartment Species Reaction Parameter Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00071 Compartment Species Reaction Parameter EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00072 Compartment Species Reaction Parameter EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00073 Compartment Species Reaction Parameter EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00074 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00075 Compartment Species Reaction Parameter Amount NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00076 Compartment Species Reaction Parameter Amount NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00077 Compartment Species Reaction Parameter Amount NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00078 Compartment Species Reaction Parameter FunctionDefinition AssignmentRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00079 Compartment Species Reaction Parameter FunctionDefinition AssignmentRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00080 Compartment Species Reaction Parameter FunctionDefinition AssignmentRule Amount 2.1 2.2 2.3 2.4 3.1 +00081 Compartment Species Reaction Parameter RateRule Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00082 Compartment Species Reaction Parameter RateRule Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00083 Compartment Species Reaction Parameter RateRule Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00084 Compartment Species Reaction Parameter FunctionDefinition RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00085 Compartment Species Reaction Parameter FunctionDefinition RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00086 Compartment Species Reaction Parameter FunctionDefinition RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00087 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00088 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00089 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00090 Compartment Species Reaction Parameter AssignmentRule Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00091 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00092 Compartment Species Reaction Parameter RateRule AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00093 Compartment Species Reaction Parameter RateRule AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00094 Compartment Species Reaction Parameter RateRule AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00095 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00096 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00097 Compartment Species Reaction Parameter FunctionDefinition Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00098 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00099 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00100 Compartment Species Reaction Parameter FunctionDefinition Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00101 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00102 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00103 Compartment Species Reaction Parameter FunctionDefinition Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00104 Compartment Species Reaction Parameter FunctionDefinition RateRule Amount NonConstantCompartment NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00105 Compartment Species Reaction Parameter FunctionDefinition RateRule Amount NonConstantCompartment NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00106 Compartment Species Reaction Parameter FunctionDefinition RateRule Amount NonConstantCompartment NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00107 Compartment Species Reaction Parameter FunctionDefinition Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00108 Compartment Species Reaction Parameter FunctionDefinition Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00109 Compartment Species Reaction Parameter FunctionDefinition Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00110 Compartment Species Reaction Parameter FunctionDefinition Amount MultiCompartment NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00111 Compartment Species Reaction Parameter FunctionDefinition Amount MultiCompartment NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00112 Compartment Species Reaction Parameter FunctionDefinition Amount MultiCompartment ReversibleReaction 2.1 2.2 2.3 2.4 3.1 +00113 Compartment Species Reaction Parameter FunctionDefinition Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00114 Compartment Species Reaction Parameter FunctionDefinition Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00115 Compartment Species Reaction Parameter FunctionDefinition Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00116 Compartment Species Reaction Parameter FunctionDefinition Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00117 Compartment Species Reaction Parameter FunctionDefinition Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00118 Compartment Species Reaction Parameter FunctionDefinition Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00119 Compartment Species Reaction Parameter FunctionDefinition Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00120 Compartment Species Reaction Parameter FunctionDefinition Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00121 Compartment Species Reaction Parameter FunctionDefinition Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00122 Compartment Species Reaction Parameter FunctionDefinition RateRule Amount NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00123 Compartment Species Reaction Parameter FunctionDefinition RateRule Amount NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00124 Compartment Species Reaction Parameter FunctionDefinition RateRule Amount NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00125 Compartment Species Reaction Parameter FunctionDefinition Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00126 Compartment Species Reaction Parameter FunctionDefinition Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00127 Compartment Parameter Reaction Species FunctionDefinition Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00128 Compartment Species Reaction Parameter FunctionDefinition Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00129 StoichiometryMath Compartment Species Reaction Parameter FunctionDefinition Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00130 StoichiometryMath Compartment Species Reaction Parameter FunctionDefinition Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00131 StoichiometryMath Compartment Species Reaction Parameter FunctionDefinition Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00132 Compartment Species Reaction FunctionDefinition Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00133 Compartment Parameter Species Reaction FunctionDefinition Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00134 Compartment Species Parameter Reaction FunctionDefinition Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00135 Compartment Species Reaction Parameter InitialAssignment Amount 2.2 2.3 2.4 3.1 +00136 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00137 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00138 Compartment Species Reaction Parameter AssignmentRule Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00139 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00140 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00141 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00142 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00143 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00144 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00145 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00146 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00147 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00148 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00149 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00150 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00151 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00152 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00153 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00154 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00155 Compartment Species Reaction Parameter AssignmentRule Amount 0D-Compartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00156 Compartment Species Reaction Parameter AssignmentRule Amount 0D-Compartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00157 Compartment Species Reaction Parameter AssignmentRule Amount NonUnityCompartment InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00158 Compartment Species Reaction Parameter AssignmentRule Amount NonUnityCompartment InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00159 Compartment Species Reaction Parameter AssignmentRule Amount NonUnityStoichiometry InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00160 Compartment Species Reaction Parameter AssignmentRule Amount NonUnityStoichiometry InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00161 Parameter RateRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00162 Parameter RateRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00163 Parameter RateRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00164 Parameter RateRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00165 Parameter RateRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00166 Parameter RateRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00167 Parameter RateRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00168 Parameter RateRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00169 Parameter RateRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00170 Parameter RateRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00171 Parameter FunctionDefinition RateRule NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00172 Parameter RateRule EventNoDelay NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00173 Parameter RateRule NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00174 Parameter AssignmentRule InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00175 Parameter RateRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00176 Parameter RateRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00177 Parameter RateRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00178 Parameter FunctionDefinition RateRule NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00179 Parameter FunctionDefinition RateRule NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00180 Parameter InitialAssignment RateRule NonConstantParameter InitialValueReassigned 2.2 2.3 2.4 3.1 +00181 Parameter RateRule AssignmentRule NonConstantParameter InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00182 Parameter RateRule AlgebraicRule NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00183 Parameter FunctionDefinition RateRule AssignmentRule NonConstantParameter InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00184 Parameter FunctionDefinition RateRule AlgebraicRule NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00185 Parameter InitialAssignment RateRule AssignmentRule NonConstantParameter InitialValueReassigned 2.2 2.3 2.4 3.1 +00186 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00187 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00188 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00189 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00190 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00191 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00192 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00193 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00194 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00195 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00196 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00197 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00198 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00199 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00200 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00201 Compartment Species Reaction Parameter Amount 2.1 2.2 2.3 2.4 3.1 +00202 Compartment Species Reaction Parameter Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00203 Compartment Species Reaction Parameter Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00204 Compartment Species Reaction Parameter Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00205 Compartment Species Reaction Parameter Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00206 Compartment Species Reaction Parameter Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00207 Compartment Species Reaction Parameter Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00208 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00209 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00210 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00211 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00212 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00213 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00214 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00215 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00216 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00217 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00218 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00219 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00220 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00221 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00222 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00223 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00224 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00225 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00226 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00227 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00228 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00229 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00230 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00231 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00232 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00233 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00234 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00235 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00236 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00237 Compartment Species Reaction Parameter Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00238 Compartment Species Reaction Parameter Amount 0D-Compartment BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00239 Compartment Species Reaction Parameter Amount 0D-Compartment BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00240 Compartment Species Reaction Parameter Amount 0D-Compartment BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00241 Compartment Species Reaction Parameter Amount 0D-Compartment BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00242 Compartment Species Reaction Parameter Amount 0D-Compartment BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00243 Compartment Species Reaction Parameter Amount 0D-Compartment BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00244 Compartment Species Reaction Parameter Amount 0D-Compartment BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00245 Compartment Species Reaction Parameter Amount 0D-Compartment BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00246 Compartment Species Reaction Parameter Amount 0D-Compartment BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00247 Compartment Species Reaction Parameter Amount 0D-Compartment BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00248 Compartment Species Reaction Parameter Amount ConstantSpecies NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00249 Compartment Species Reaction Parameter Amount ConstantSpecies NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00250 Compartment Species Reaction Parameter Amount ConstantSpecies NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00251 Compartment Species Reaction Parameter Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00252 Compartment Species Reaction Parameter Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00253 Compartment Species Reaction Parameter Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00254 Compartment Species Reaction Parameter Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00255 Compartment Species Reaction Parameter Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00256 Compartment Species Reaction Parameter Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00257 Compartment Species Reaction Parameter Amount ConstantSpecies 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00258 Compartment Species Reaction Parameter Amount ConstantSpecies 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00259 Compartment Species Reaction Parameter Amount ConstantSpecies 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00260 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00261 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00262 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00263 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00264 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00265 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00266 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00267 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00268 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00269 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00270 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00271 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00272 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00273 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00274 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00275 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00276 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00277 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00278 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00279 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00280 Compartment Species Reaction Parameter FunctionDefinition Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00281 Compartment Species Reaction Parameter FunctionDefinition Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00282 Compartment Species Reaction Parameter FunctionDefinition Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00283 Compartment Species Reaction Parameter FunctionDefinition Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00284 Compartment Species Reaction Parameter FunctionDefinition Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00285 Compartment Species Reaction Parameter FunctionDefinition Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00286 Compartment Species Reaction Parameter AssignmentRule Amount MultiCompartment NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00287 Compartment Species Reaction Parameter AssignmentRule Amount MultiCompartment InitialValueReassigned NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00288 Compartment Species Reaction Parameter AssignmentRule Amount MultiCompartment ReversibleReaction 1.2 2.1 2.2 2.3 2.4 3.1 +00289 Compartment Species Reaction Parameter AssignmentRule Amount MultiCompartment InitialValueReassigned NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00290 Compartment Species Reaction Parameter AssignmentRule Amount MultiCompartment InitialValueReassigned NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00291 Compartment Species Reaction Parameter AssignmentRule Amount MultiCompartment NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00292 Compartment Species Reaction Parameter AssignmentRule Amount MultiCompartment InitialValueReassigned NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00293 Compartment Species Reaction Parameter AssignmentRule Amount MultiCompartment InitialValueReassigned ReversibleReaction 1.2 2.1 2.2 2.3 2.4 3.1 +00294 Compartment Species Reaction Parameter AssignmentRule Amount MultiCompartment InitialValueReassigned ReversibleReaction 1.2 2.1 2.2 2.3 2.4 3.1 +00295 Compartment Species Reaction Parameter AssignmentRule Amount HasOnlySubstanceUnits InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00296 Compartment Species Reaction Parameter AssignmentRule Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00297 Compartment Species Reaction Parameter AssignmentRule Amount BoundaryCondition InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00298 Compartment Species Reaction Parameter AssignmentRule Amount BoundaryCondition InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00299 Compartment Species Reaction Parameter AssignmentRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00300 Compartment Species Reaction Parameter AssignmentRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00301 Compartment Species Reaction Parameter AssignmentRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00302 Compartment Species Reaction Parameter AssignmentRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00303 Compartment Species Reaction Parameter AssignmentRule Amount BoundaryCondition InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00304 Compartment Species Reaction Parameter AssignmentRule Amount ConstantSpecies BoundaryCondition InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00305 Compartment Species Reaction Parameter AssignmentRule Amount ConstantSpecies BoundaryCondition InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00306 Compartment Species Reaction Parameter AssignmentRule Amount BoundaryCondition ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00307 Compartment Species Reaction Parameter AssignmentRule Amount BoundaryCondition ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00308 Compartment Species Reaction Parameter AssignmentRule Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00309 Compartment Species Reaction Parameter AssignmentRule Amount ConstantSpecies InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00310 Compartment Species Reaction Parameter AssignmentRule RateRule Amount NonConstantCompartment NonUnityCompartment NonConstantParameter InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00311 Compartment Species Reaction Parameter AssignmentRule RateRule Amount NonConstantCompartment NonUnityCompartment NonConstantParameter InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00312 Compartment Species Reaction Parameter AssignmentRule RateRule Amount NonConstantCompartment NonUnityCompartment NonConstantParameter InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00313 Compartment Species RateRule Reaction Parameter AssignmentRule Amount NonConstantCompartment NonUnityCompartment NonConstantParameter InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00314 Compartment Species RateRule Reaction Parameter AssignmentRule Amount NonConstantCompartment NonUnityCompartment NonConstantParameter InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00315 Compartment Species RateRule Reaction Parameter AssignmentRule Amount NonConstantCompartment NonUnityCompartment NonConstantParameter InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00316 Compartment Species RateRule Reaction Parameter AssignmentRule Amount NonConstantCompartment NonUnityCompartment NonConstantParameter InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00317 Compartment Species RateRule Reaction Parameter AssignmentRule Amount NonConstantCompartment NonUnityCompartment NonConstantParameter InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00318 Compartment Species RateRule Reaction Parameter AssignmentRule Amount NonConstantCompartment NonUnityCompartment NonConstantParameter InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00319 Compartment Species Reaction Parameter RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00320 Compartment Species Reaction Parameter RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00321 Compartment Species Reaction Parameter RateRule Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00322 Compartment Species Reaction Parameter RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00323 Compartment Species Reaction Parameter RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00324 Compartment Species Reaction Parameter RateRule Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00325 Compartment Species Reaction Parameter RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00326 Compartment Species Reaction Parameter RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00327 Compartment Species Reaction Parameter RateRule Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00328 Compartment Species Reaction Parameter RateRule Amount NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00329 Compartment Species Reaction Parameter RateRule Amount NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00330 Compartment Species Reaction Parameter RateRule Amount NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00331 Compartment Species Reaction Parameter RateRule Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00332 Compartment Species Reaction Parameter RateRule Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00333 Compartment Species Reaction Parameter RateRule Amount HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00334 Compartment Species Reaction Parameter RateRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00335 Compartment Species Reaction Parameter RateRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00336 Compartment Species Reaction Parameter RateRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00337 Compartment Species Reaction Parameter RateRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00338 Compartment Species Reaction Parameter RateRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00339 Compartment Species Reaction Parameter RateRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00340 Compartment Species Reaction Parameter RateRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00341 Compartment Species Reaction Parameter RateRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00342 Compartment Species Reaction Parameter RateRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00343 Compartment Species Reaction Parameter RateRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00344 Compartment Species Reaction Parameter RateRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00345 Compartment Species Reaction Parameter RateRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00346 Compartment Species Reaction Parameter RateRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00347 Compartment Species Reaction Parameter RateRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00348 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00349 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00350 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00351 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00352 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00353 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00354 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00355 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00356 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00357 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00358 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00359 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00360 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00361 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00362 Compartment Species Reaction Parameter EventNoDelay Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00363 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00364 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00365 Compartment Species Reaction Parameter EventNoDelay Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00366 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00367 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00368 Compartment Species Reaction Parameter EventNoDelay Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00369 Compartment Species Reaction Parameter EventNoDelay Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00370 Compartment Species Reaction Parameter EventNoDelay Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00371 Compartment Species Reaction Parameter EventNoDelay Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00372 Compartment Species Reaction Parameter EventNoDelay Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00373 Compartment Species Reaction Parameter EventNoDelay Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00374 Compartment Species Reaction Parameter EventNoDelay Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00375 Compartment Species Reaction Parameter EventNoDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00376 Compartment Species Reaction Parameter EventNoDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00377 Compartment Species Reaction Parameter EventNoDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00378 Compartment Species Reaction Parameter EventNoDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00379 Compartment Species Reaction Parameter EventNoDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00380 Compartment Species Reaction Parameter EventNoDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00381 Compartment Species Reaction Parameter EventNoDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00382 Compartment Species Reaction Parameter EventNoDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00383 Compartment Species Reaction Parameter EventNoDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00384 Compartment Species Reaction Parameter EventNoDelay Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00385 Compartment Species Reaction Parameter EventNoDelay Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00386 Compartment Species Reaction Parameter EventNoDelay Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00387 Compartment Species Reaction Parameter EventNoDelay Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00388 StoichiometryMath Compartment Species Reaction Parameter EventNoDelay Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00389 Compartment Species Reaction EventNoDelay Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00390 Compartment Species Reaction Parameter EventNoDelay Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00391 StoichiometryMath Compartment Species Reaction Parameter EventNoDelay Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00392 Compartment Species Reaction EventNoDelay Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00393 Compartment Species Reaction Parameter EventNoDelay Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00394 StoichiometryMath Compartment Species Reaction Parameter EventNoDelay Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00395 Compartment Species Reaction EventNoDelay Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00396 Parameter RateRule EventNoDelay NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00397 Parameter RateRule EventNoDelay NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00398 Parameter RateRule EventNoDelay NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00399 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00400 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00401 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00402 Parameter RateRule EventNoDelay NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00403 Parameter RateRule EventNoDelay NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00404 Parameter RateRule EventNoDelay NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00405 Compartment Species Reaction Parameter EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00406 Compartment Species Reaction Parameter EventWithDelay Amount EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00407 Compartment Species Reaction Parameter EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00408 Compartment Species Reaction Parameter EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00409 Compartment Species Reaction Parameter EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00410 Compartment Species Reaction Parameter EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00411 Compartment Species Reaction Parameter EventWithDelay FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00412 Compartment Species Reaction Parameter EventWithDelay FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00413 Compartment Species Reaction Parameter EventWithDelay FunctionDefinition Amount EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00414 Compartment Species Reaction Parameter EventWithDelay FunctionDefinition Amount EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00415 Compartment Species Reaction Parameter EventWithDelay FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00416 Compartment Species Reaction Parameter EventWithDelay FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00417 Compartment Species Reaction Parameter EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00418 Compartment Species Reaction Parameter EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00419 Compartment Species Reaction Parameter EventWithDelay Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00420 Compartment Species Reaction Parameter EventWithDelay Amount EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00421 Compartment Species Reaction Parameter EventWithDelay Amount EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00422 Compartment Species Reaction Parameter EventWithDelay Amount 0D-Compartment EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00423 Compartment Species Reaction Parameter EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00424 Compartment Species Reaction Parameter EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00425 Compartment Species Reaction Parameter EventWithDelay Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00426 Compartment Species Reaction Parameter EventWithDelay Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00427 Compartment Species Reaction Parameter EventWithDelay Amount NonUnityCompartment EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00428 Compartment Species Reaction Parameter EventWithDelay Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00429 Compartment Species Reaction Parameter EventWithDelay Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00430 Compartment Species Reaction Parameter EventWithDelay Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00431 Compartment Species Reaction Parameter EventWithDelay Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00432 Compartment Species Reaction Parameter EventWithDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00433 Compartment Species Reaction Parameter EventWithDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00434 Compartment Species Reaction Parameter EventWithDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00435 Compartment Species Reaction Parameter EventWithDelay Amount BoundaryCondition EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00436 Compartment Species Reaction Parameter EventWithDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00437 Compartment Species Reaction Parameter EventWithDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00438 Compartment Species Reaction Parameter EventWithDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00439 Compartment Species Reaction Parameter EventWithDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00440 Compartment Species Reaction Parameter EventWithDelay Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00441 Compartment Species Reaction Parameter EventWithDelay Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00442 Compartment Species Reaction Parameter EventWithDelay Amount ConstantSpecies EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00443 Compartment Species Reaction Parameter EventWithDelay Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00444 Compartment Species Reaction Parameter EventWithDelay Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00445 StoichiometryMath Compartment Species Reaction Parameter EventWithDelay Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00446 Compartment Species Reaction EventWithDelay Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00447 Compartment Species Reaction Parameter EventWithDelay Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00448 StoichiometryMath Compartment Species Reaction Parameter EventWithDelay Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00449 Compartment Species Reaction EventWithDelay Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00450 Compartment Species Reaction Parameter EventWithDelay Amount NonUnityStoichiometry EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00451 StoichiometryMath Compartment Species Reaction Parameter EventWithDelay Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00452 Compartment Species Reaction EventWithDelay Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00453 Parameter RateRule EventWithDelay NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00454 Parameter RateRule EventWithDelay NonConstantParameter EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00455 Parameter RateRule EventWithDelay NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00456 Compartment Species Reaction Parameter EventWithDelay Amount EventUsesTriggerTimeValues 2.1 2.2 2.3 2.4 3.1 +00457 Compartment Species Reaction Parameter EventWithDelay Amount EventUsesTriggerTimeValues 2.1 2.2 2.3 2.4 3.1 +00458 Compartment Species Reaction Parameter EventWithDelay Amount EventUsesTriggerTimeValues 2.1 2.2 2.3 2.4 3.1 +00459 Parameter RateRule EventWithDelay NonConstantParameter EventUsesTriggerTimeValues 2.1 2.2 2.3 2.4 3.1 +00460 Parameter RateRule EventWithDelay NonConstantParameter EventUsesTriggerTimeValues 2.1 2.2 2.3 2.4 3.1 +00461 Parameter RateRule EventWithDelay NonConstantParameter EventUsesTriggerTimeValues 2.1 2.2 2.3 2.4 3.1 +00462 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00463 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00464 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00465 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00466 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00467 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00468 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00469 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00470 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00471 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00472 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00473 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00474 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00475 Compartment Species Reaction Parameter InitialAssignment Amount 2.2 2.3 2.4 3.1 +00476 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00477 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00478 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00479 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00480 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00481 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00482 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00483 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00484 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00485 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00486 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00487 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00488 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00489 Compartment Species Reaction Parameter InitialAssignment Amount 0D-Compartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00490 Compartment Species Reaction Parameter InitialAssignment Amount 0D-Compartment 2.2 2.3 2.4 3.1 +00491 Compartment Species Reaction Parameter InitialAssignment Amount 0D-Compartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00492 Compartment Species Reaction Parameter InitialAssignment Amount NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00493 Compartment Species Reaction Parameter InitialAssignment Amount NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00494 Compartment Species Reaction Parameter InitialAssignment Amount NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00495 Compartment Species Reaction Parameter InitialAssignment Amount NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00496 Compartment Species Reaction Parameter InitialAssignment Amount NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00497 Compartment Species Reaction Parameter InitialAssignment Amount NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00498 Compartment Species Reaction Parameter InitialAssignment Amount BoundaryCondition InitialValueReassigned 2.2 2.3 2.4 3.1 +00499 Compartment Species Reaction Parameter InitialAssignment Amount BoundaryCondition InitialValueReassigned 2.2 2.3 2.4 3.1 +00500 Compartment Species Reaction Parameter InitialAssignment Amount BoundaryCondition 2.2 2.3 2.4 3.1 +00501 Compartment Species Reaction Parameter InitialAssignment Amount BoundaryCondition InitialValueReassigned 2.2 2.3 2.4 3.1 +00502 Compartment Species Reaction Parameter InitialAssignment Amount BoundaryCondition 2.2 2.3 2.4 3.1 +00503 Compartment Species Reaction Parameter InitialAssignment Amount BoundaryCondition InitialValueReassigned 2.2 2.3 2.4 3.1 +00504 Compartment Species Reaction Parameter InitialAssignment Amount ConstantSpecies InitialValueReassigned 2.2 2.3 2.4 3.1 +00505 Compartment Species Reaction Parameter InitialAssignment Amount ConstantSpecies 2.2 2.3 2.4 3.1 +00506 Compartment Species Reaction Parameter InitialAssignment Amount ConstantSpecies InitialValueReassigned 2.2 2.3 2.4 3.1 +00507 Compartment Species Reaction Parameter InitialAssignment Amount ConstantSpecies 2.2 2.3 2.4 3.1 +00508 Compartment Species Reaction Parameter InitialAssignment Amount ConstantSpecies InitialValueReassigned 2.2 2.3 2.4 3.1 +00509 Compartment Species Reaction Parameter InitialAssignment Amount ConstantSpecies InitialValueReassigned 2.2 2.3 2.4 3.1 +00510 Compartment Species Reaction Parameter InitialAssignment Amount NonUnityStoichiometry InitialValueReassigned 2.2 2.3 2.4 3.1 +00511 Compartment Species Reaction Parameter InitialAssignment Amount NonUnityStoichiometry InitialValueReassigned 2.2 2.3 2.4 3.1 +00512 Compartment Species Reaction Parameter InitialAssignment Amount NonUnityStoichiometry 2.2 2.3 2.4 3.1 +00513 Compartment Species Reaction Parameter InitialAssignment Amount NonUnityStoichiometry InitialValueReassigned 2.2 2.3 2.4 3.1 +00514 Compartment Species Reaction Parameter InitialAssignment Amount NonUnityStoichiometry InitialValueReassigned 2.2 2.3 2.4 3.1 +00515 Compartment Species Reaction Parameter InitialAssignment Amount NonUnityStoichiometry InitialValueReassigned 2.2 2.3 2.4 3.1 +00516 StoichiometryMath Compartment Species Reaction Parameter InitialAssignment Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 2.2 2.3 2.4 +00517 StoichiometryMath Compartment Species Reaction Parameter InitialAssignment Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 2.2 2.3 2.4 +00518 StoichiometryMath Compartment Species Reaction Parameter InitialAssignment Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.2 2.3 2.4 +00519 StoichiometryMath Compartment Species Reaction Parameter InitialAssignment Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 2.2 2.3 2.4 +00520 StoichiometryMath Compartment Species Reaction Parameter InitialAssignment Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.2 2.3 2.4 +00521 StoichiometryMath Compartment Species Reaction Parameter InitialAssignment Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 2.2 2.3 2.4 +00522 Compartment Species Reaction Parameter InitialAssignment Amount LocalParameters InitialValueReassigned 2.2 2.3 2.4 3.1 +00523 Compartment Species Reaction Parameter InitialAssignment Amount LocalParameters 2.2 2.3 2.4 3.1 +00524 Compartment Species Reaction Parameter InitialAssignment Amount LocalParameters InitialValueReassigned 2.2 2.3 2.4 3.1 +00525 Compartment Species Reaction Parameter InitialAssignment Amount LocalParameters InitialValueReassigned 2.2 2.3 2.4 3.1 +00526 Compartment Species Reaction Parameter InitialAssignment Amount LocalParameters InitialValueReassigned 2.2 2.3 2.4 3.1 +00527 Compartment Species Reaction Parameter InitialAssignment Amount LocalParameters InitialValueReassigned 2.2 2.3 2.4 3.1 +00528 Compartment Species Reaction Parameter InitialAssignment FunctionDefinition Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00529 Compartment Species Reaction Parameter InitialAssignment FunctionDefinition Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00530 Compartment Species Reaction Parameter InitialAssignment FunctionDefinition Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00531 Compartment Species Reaction Parameter AlgebraicRule Amount 2.1 2.2 2.3 2.4 3.1 +00532 Compartment Species Reaction Parameter AlgebraicRule Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00533 Compartment Species Reaction Parameter AlgebraicRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00534 Compartment Species Reaction Parameter AlgebraicRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00535 Compartment Species Reaction Parameter AlgebraicRule Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00536 Compartment Species Reaction Parameter AlgebraicRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00537 Compartment Species Reaction Parameter AlgebraicRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00538 Compartment Species Reaction Parameter AlgebraicRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00539 Compartment Species Reaction Parameter AlgebraicRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00540 Compartment Species Reaction Parameter AlgebraicRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00541 Compartment Species Reaction Parameter AlgebraicRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00542 Compartment Species Reaction Parameter AlgebraicRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00543 Compartment Species Reaction Parameter AlgebraicRule Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00544 Compartment Species Reaction Parameter AlgebraicRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00545 Compartment Species Reaction Parameter AlgebraicRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00546 Compartment Species Reaction Parameter AlgebraicRule Amount 0D-Compartment 2.1 2.2 2.3 2.4 3.1 +00547 Compartment Species Reaction Parameter AlgebraicRule Amount NonUnityCompartment InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00548 Compartment Species Reaction Parameter AlgebraicRule Amount NonUnityCompartment InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00549 Compartment Species Reaction Parameter AlgebraicRule Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00550 Compartment Species Reaction Parameter AlgebraicRule Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00551 Compartment Species Reaction Parameter AlgebraicRule Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00552 Compartment Species Reaction Parameter AlgebraicRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00553 Compartment Species Reaction Parameter AlgebraicRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00554 Compartment Species Reaction Parameter AlgebraicRule Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00555 Compartment Species Reaction Parameter AlgebraicRule Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00556 Compartment Species Reaction Parameter AlgebraicRule Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00557 Compartment Species Reaction Parameter AlgebraicRule Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00558 Compartment Species Reaction Parameter AlgebraicRule Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00559 Compartment Species Reaction Parameter AlgebraicRule Amount NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00560 Compartment Species Reaction Parameter AlgebraicRule Amount NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00561 StoichiometryMath Compartment Species Reaction Parameter AlgebraicRule Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 2.1 2.2 2.3 2.4 +00562 StoichiometryMath Compartment Species Reaction Parameter AlgebraicRule Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 2.1 2.2 2.3 2.4 +00563 StoichiometryMath Compartment Species Reaction Parameter AlgebraicRule Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00564 StoichiometryMath Compartment Species Reaction Parameter AlgebraicRule Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00565 Compartment Species Reaction Parameter AlgebraicRule Amount LocalParameters InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00566 Compartment Species Reaction AlgebraicRule Amount LocalParameters 1.2 2.1 2.2 2.3 2.4 3.1 +00567 Compartment Species Reaction Parameter AlgebraicRule FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00568 Compartment Species Reaction Parameter AlgebraicRule FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00569 Compartment Species Reaction Parameter AlgebraicRule FunctionDefinition Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00570 Compartment Species Reaction Parameter AlgebraicRule FunctionDefinition Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00571 Compartment Species Reaction Parameter AlgebraicRule FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00572 Compartment Species Reaction Parameter AlgebraicRule FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00573 Parameter RateRule AlgebraicRule NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00574 Parameter RateRule AlgebraicRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00575 Parameter RateRule AlgebraicRule NonConstantParameter InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00576 Parameter RateRule AlgebraicRule NonConstantParameter 1.2 2.1 2.2 2.3 2.4 3.1 +00577 Compartment Species Reaction Parameter Concentration BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00578 Compartment Species Reaction Parameter Concentration BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00579 Compartment Species Reaction Parameter Concentration BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00580 Compartment Species Reaction Parameter Concentration NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00581 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00582 Compartment Species Reaction Parameter Concentration BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00583 Compartment Species Reaction Parameter Concentration NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00584 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00585 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00586 Compartment Species Reaction Parameter Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00587 Compartment Species Reaction Parameter Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00588 Compartment Species Reaction Parameter Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00589 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00590 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00591 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00592 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00593 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00594 Compartment Species Reaction Parameter Concentration 2.1 2.2 2.3 2.4 3.1 +00595 Compartment Species Reaction Concentration LocalParameters 2.1 2.2 2.3 2.4 3.1 +00596 Compartment Species Reaction Parameter Concentration LocalParameters 2.1 2.2 2.3 2.4 3.1 +00597 Compartment Species Reaction Parameter Concentration LocalParameters 2.1 2.2 2.3 2.4 3.1 +00598 Compartment Species Reaction Parameter Concentration ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00599 Compartment Species Reaction Parameter Concentration ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00600 Compartment Species Reaction Parameter Concentration ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00601 Compartment Species Reaction Parameter Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00602 Compartment Species Reaction Parameter Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00603 Compartment Species Reaction Parameter Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00604 Compartment Species Reaction Parameter FunctionDefinition Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00605 Compartment Species Reaction Parameter FunctionDefinition Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00606 Compartment Species Reaction Parameter FunctionDefinition Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00607 Compartment Species Reaction Parameter AssignmentRule Concentration NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00608 Compartment Species Reaction Parameter AssignmentRule Concentration NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00609 StoichiometryMath Compartment Species Reaction Parameter AssignmentRule Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 2.1 2.2 2.3 2.4 +00610 StoichiometryMath Compartment Species Reaction Parameter AssignmentRule Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 2.1 2.2 2.3 2.4 +00611 Compartment Species Reaction Parameter AssignmentRule Amount LocalParameters InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00612 Compartment Species Reaction Parameter AssignmentRule Amount LocalParameters InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00613 Compartment Species Reaction Parameter AlgebraicRule AssignmentRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00614 Compartment Species Reaction Parameter AlgebraicRule AssignmentRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00615 Compartment Species Reaction Parameter AlgebraicRule AssignmentRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00616 Compartment Species Reaction Parameter AssignmentRule InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00617 Compartment Species Reaction Parameter AssignmentRule InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00618 Compartment Species Reaction Parameter AssignmentRule InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00619 Compartment Species Reaction Parameter AssignmentRule EventNoDelay Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00620 Compartment Species Reaction Parameter AssignmentRule EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00621 Compartment Species Reaction Parameter AssignmentRule EventNoDelay Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00622 Compartment Species Reaction Parameter AssignmentRule EventWithDelay Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00623 Compartment Species Reaction Parameter AssignmentRule EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00624 Compartment Species Reaction Parameter AssignmentRule EventWithDelay Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00625 Compartment Species Reaction Parameter RateRule AssignmentRule FunctionDefinition Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00626 Compartment Species Reaction Parameter RateRule AssignmentRule FunctionDefinition Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00627 Compartment Species Reaction Parameter RateRule AssignmentRule FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00628 Compartment Species Reaction Parameter AlgebraicRule AssignmentRule FunctionDefinition Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00629 Compartment Species Reaction Parameter AlgebraicRule AssignmentRule FunctionDefinition Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00630 Compartment Species Reaction Parameter AlgebraicRule AssignmentRule FunctionDefinition Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00631 Compartment Species Reaction Parameter AssignmentRule InitialAssignment FunctionDefinition Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00632 Compartment Species Reaction Parameter AssignmentRule InitialAssignment FunctionDefinition Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00633 Compartment Species Reaction Parameter AssignmentRule InitialAssignment FunctionDefinition Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00634 Compartment Species Reaction Parameter AssignmentRule EventNoDelay FunctionDefinition Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00635 Compartment Species Reaction Parameter AssignmentRule EventNoDelay FunctionDefinition Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00636 Compartment Species Reaction Parameter AssignmentRule EventNoDelay FunctionDefinition Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00637 Compartment Species Reaction Parameter AssignmentRule EventWithDelay FunctionDefinition Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00638 Compartment Species Reaction Parameter AssignmentRule EventWithDelay FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00639 Compartment Species Reaction Parameter AssignmentRule EventWithDelay FunctionDefinition Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00640 Compartment Species Reaction Parameter RateRule InitialAssignment Amount 2.2 2.3 2.4 3.1 +00641 Compartment Species Reaction Parameter RateRule InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00642 Compartment Species Reaction Parameter RateRule InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00643 Compartment Species Reaction Parameter RateRule AssignmentRule InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00644 Compartment Species Reaction Parameter RateRule AssignmentRule InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00645 Compartment Species Reaction Parameter RateRule AssignmentRule InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00646 Compartment Species Reaction Parameter RateRule EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00647 Compartment Species Reaction Parameter RateRule EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00648 Compartment Species Reaction Parameter RateRule EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00649 Compartment Species Reaction Parameter RateRule EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00650 Compartment Species Reaction Parameter RateRule EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00651 Compartment Species Reaction Parameter RateRule EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00652 Compartment Species Reaction Parameter RateRule AssignmentRule EventNoDelay Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00653 Compartment Species Reaction Parameter RateRule AssignmentRule EventNoDelay Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00654 Compartment Species Reaction Parameter RateRule AssignmentRule EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00655 Compartment Species Reaction Parameter RateRule AssignmentRule EventWithDelay Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00656 Compartment Species Reaction Parameter RateRule AssignmentRule EventWithDelay Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00657 Compartment Species Reaction Parameter RateRule AssignmentRule EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00658 Compartment Species Reaction Parameter AlgebraicRule InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00659 Compartment Species Reaction Parameter AlgebraicRule InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00660 Compartment Species Reaction Parameter AlgebraicRule InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00661 Compartment Species Reaction Parameter AlgebraicRule EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00662 Compartment Species Reaction Parameter AlgebraicRule EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00663 Compartment Species Reaction Parameter AlgebraicRule EventNoDelay Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00664 Compartment Species Reaction Parameter AlgebraicRule EventWithDelay Amount EventUsesTriggerTimeValues InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00665 Compartment Species Reaction Parameter AlgebraicRule EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00666 Compartment Species Reaction Parameter AlgebraicRule EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00667 Compartment Species Reaction Parameter FunctionDefinition AssignmentRule Amount NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00668 Compartment Species Reaction Parameter FunctionDefinition AssignmentRule Amount NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00669 Compartment Species Reaction Parameter FunctionDefinition AssignmentRule Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00670 Compartment Species Reaction Parameter RateRule AssignmentRule Amount NonUnityCompartment InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00671 Compartment Species Reaction Parameter RateRule AssignmentRule Amount NonUnityCompartment InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00672 Compartment Species Reaction Parameter RateRule AssignmentRule Amount NonUnityCompartment InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00673 Compartment Species Reaction Parameter AlgebraicRule AssignmentRule Amount NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00674 Compartment Species Reaction Parameter AlgebraicRule AssignmentRule Amount NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00675 Compartment Species Reaction Parameter AlgebraicRule AssignmentRule Amount NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00676 Compartment Species Reaction Parameter AssignmentRule InitialAssignment Amount NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00677 Compartment Species Reaction Parameter AssignmentRule InitialAssignment Amount NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00678 Compartment Species Reaction Parameter AssignmentRule InitialAssignment Amount NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00679 Compartment Species Reaction Parameter AssignmentRule EventNoDelay Amount NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00680 Compartment Species Reaction Parameter AssignmentRule EventNoDelay Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00681 Compartment Species Reaction Parameter AssignmentRule EventNoDelay Amount NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00682 Compartment Species Reaction Parameter AssignmentRule EventWithDelay Amount NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00683 Compartment Species Reaction Parameter AssignmentRule EventWithDelay Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00684 Compartment Species Reaction Parameter AssignmentRule EventWithDelay Amount NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00685 Compartment Species Reaction Parameter FunctionDefinition AssignmentRule Concentration NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00686 Compartment Species Reaction Parameter RateRule AssignmentRule Concentration NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00687 Compartment Species Reaction Parameter AlgebraicRule AssignmentRule Concentration NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00688 Compartment Species Reaction Parameter AssignmentRule InitialAssignment Concentration NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00689 Compartment Species Reaction Parameter AssignmentRule EventNoDelay Concentration NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00690 Compartment Species Reaction Parameter AssignmentRule EventWithDelay Concentration NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00691 Compartment Species Reaction Parameter FunctionDefinition AssignmentRule Amount BoundaryCondition InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00692 Compartment Species Reaction Parameter FunctionDefinition AssignmentRule Amount BoundaryCondition InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00693 Compartment Species Reaction Parameter RateRule AssignmentRule Amount BoundaryCondition InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00694 Compartment Species Reaction Parameter RateRule AssignmentRule Amount BoundaryCondition InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00695 Compartment Species Reaction Parameter AlgebraicRule AssignmentRule Amount BoundaryCondition InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00696 Compartment Species Reaction Parameter AlgebraicRule AssignmentRule Amount BoundaryCondition InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00697 Compartment Species Reaction Parameter AssignmentRule InitialAssignment Amount BoundaryCondition InitialValueReassigned 2.2 2.3 2.4 3.1 +00698 Compartment Species Reaction Parameter AssignmentRule InitialAssignment Amount BoundaryCondition InitialValueReassigned 2.2 2.3 2.4 3.1 +00699 Compartment Species Reaction Parameter AssignmentRule EventNoDelay Amount BoundaryCondition InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00700 Compartment Species Reaction Parameter AssignmentRule EventNoDelay Amount BoundaryCondition InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00701 Compartment Species Reaction Parameter AssignmentRule EventWithDelay Amount BoundaryCondition InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00702 Compartment Species Reaction Parameter AssignmentRule EventWithDelay Amount BoundaryCondition InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00703 Compartment Species Reaction Parameter FunctionDefinition AssignmentRule Amount LocalParameters InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00704 Compartment Species Reaction Parameter RateRule AssignmentRule Amount LocalParameters InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00705 Compartment Species Reaction Parameter AlgebraicRule AssignmentRule Amount LocalParameters InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00706 Compartment Species Reaction Parameter AssignmentRule InitialAssignment Amount LocalParameters InitialValueReassigned 2.2 2.3 2.4 3.1 +00707 Compartment Species Reaction Parameter AssignmentRule EventNoDelay Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00708 Compartment Species Reaction Parameter AssignmentRule EventWithDelay Amount LocalParameters InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00709 Compartment Species Reaction Parameter RateRule Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00710 Compartment Species Reaction Parameter RateRule Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00711 Compartment Species Reaction Parameter RateRule Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00712 Compartment Species Reaction Parameter FunctionDefinition RateRule Amount NonConstantParameter NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00713 Compartment Species Reaction Parameter FunctionDefinition RateRule Amount NonConstantParameter NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00714 Compartment Species Reaction Parameter FunctionDefinition RateRule Amount NonConstantParameter NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00715 Compartment Species Reaction Parameter RateRule AssignmentRule Concentration NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00716 Compartment Species Reaction Parameter RateRule AssignmentRule Concentration NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00717 Compartment Species Reaction Parameter RateRule Amount ConstantSpecies 2.1 2.2 2.3 2.4 3.1 +00718 Compartment Species Reaction Parameter RateRule Amount NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00719 Compartment Species Reaction Parameter RateRule Amount NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00720 Compartment Species Reaction Parameter FunctionDefinition RateRule Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00721 Compartment Species Reaction Parameter RateRule AssignmentRule Amount NonUnityStoichiometry InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00722 Compartment Species Reaction Parameter RateRule InitialAssignment Amount NonUnityStoichiometry InitialValueReassigned 2.2 2.3 2.4 3.1 +00723 Compartment Species Reaction Parameter RateRule EventNoDelay Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00724 Compartment Species Reaction Parameter RateRule EventWithDelay Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00725 StoichiometryMath Compartment Species Reaction Parameter RateRule Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00726 StoichiometryMath Compartment Species Reaction Parameter RateRule Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00727 StoichiometryMath Compartment Species Reaction Parameter FunctionDefinition RateRule Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00728 StoichiometryMath Compartment Species Reaction Parameter RateRule AssignmentRule Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 2.1 2.2 2.3 2.4 +00729 StoichiometryMath Compartment Species Reaction Parameter RateRule InitialAssignment Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 2.2 2.3 2.4 +00730 StoichiometryMath Compartment Species Reaction Parameter RateRule EventNoDelay Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00731 StoichiometryMath Compartment Species Reaction Parameter RateRule EventWithDelay Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00732 Compartment Species Reaction Parameter RateRule Amount LocalParameters 1.2 2.1 2.2 2.3 2.4 3.1 +00733 Compartment Species Reaction Parameter FunctionDefinition RateRule Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00734 Compartment Species Reaction Parameter RateRule AssignmentRule Amount LocalParameters InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00735 Compartment Species Reaction Parameter RateRule InitialAssignment Amount LocalParameters InitialValueReassigned 2.2 2.3 2.4 3.1 +00736 Compartment Species Reaction Parameter RateRule EventNoDelay Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00737 Compartment Species Reaction Parameter RateRule EventWithDelay Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00738 Compartment Species Reaction Parameter FunctionDefinition AssignmentRule Concentration NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00739 Compartment Species Reaction Parameter FunctionDefinition AssignmentRule Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00740 Compartment Species Reaction Parameter FunctionDefinition RateRule Concentration NonConstantParameter NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00741 Compartment Species Reaction Parameter FunctionDefinition RateRule Concentration NonConstantParameter NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00742 Compartment Species Reaction Parameter FunctionDefinition RateRule Concentration NonConstantParameter NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00743 Compartment Species Reaction Parameter EventNoDelay Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00744 Compartment Species Reaction Parameter EventNoDelay Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00745 Compartment Species Reaction Parameter EventNoDelay Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00746 Compartment Species Reaction Parameter EventNoDelay Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00747 Compartment Species Reaction Parameter EventNoDelay Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00748 Compartment Species Reaction Parameter EventNoDelay Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00749 Compartment Species Reaction Parameter AssignmentRule EventNoDelay Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00750 Compartment Species Reaction Parameter AssignmentRule EventNoDelay Concentration NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00751 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00752 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00753 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00754 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition InitialAssignment Amount 2.2 2.3 2.4 3.1 +00755 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00756 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00757 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition EventWithDelay Amount EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00758 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition EventWithDelay Amount EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00759 Compartment Species Reaction Parameter EventNoDelay FunctionDefinition EventWithDelay Amount EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00760 Compartment Species Reaction Parameter AlgebraicRule EventNoDelay FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00761 Compartment Species Reaction Parameter AlgebraicRule EventNoDelay FunctionDefinition Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00762 Compartment Species Reaction Parameter AlgebraicRule EventNoDelay FunctionDefinition Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00763 Compartment Species Reaction Parameter EventWithDelay Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00764 Compartment Species Reaction Parameter EventWithDelay Concentration NonUnityCompartment EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00765 Compartment Species Reaction Parameter EventWithDelay Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00766 Compartment Species Reaction Parameter EventWithDelay Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00767 Compartment Species Reaction Parameter EventWithDelay Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00768 Compartment Species Reaction Parameter EventWithDelay Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00769 Compartment Species Reaction Parameter AssignmentRule EventWithDelay Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00770 Compartment Species Reaction Parameter AssignmentRule EventWithDelay Concentration NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00771 Compartment Species Reaction Parameter EventWithDelay InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00772 Compartment Species Reaction Parameter EventWithDelay InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00773 Compartment Species Reaction Parameter EventWithDelay InitialAssignment Amount 2.2 2.3 2.4 3.1 +00774 Compartment Species Reaction Parameter EventWithDelay EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00775 Compartment Species Reaction Parameter EventWithDelay EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00776 Compartment Species Reaction Parameter EventWithDelay EventNoDelay Amount EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00777 Compartment Species Reaction Parameter AssignmentRule EventWithDelay AlgebraicRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00778 Compartment Species Reaction Parameter AlgebraicRule EventWithDelay InitialAssignment Amount 2.2 2.3 2.4 3.1 +00779 Compartment Species Reaction Parameter AlgebraicRule EventWithDelay InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00780 Compartment Species Reaction Parameter AlgebraicRule EventWithDelay InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00781 Compartment Species Reaction Parameter InitialAssignment Concentration NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00782 Compartment Species Reaction Parameter InitialAssignment Concentration NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00783 Compartment Species Reaction Parameter InitialAssignment Concentration NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00784 Compartment Species Reaction Parameter InitialAssignment Concentration NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00785 Compartment Species Reaction Parameter InitialAssignment Concentration NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00786 Compartment Species Reaction Parameter InitialAssignment Concentration NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00787 Compartment Species Reaction Parameter AssignmentRule InitialAssignment Concentration NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00788 Compartment Species Reaction Parameter AssignmentRule InitialAssignment Concentration NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00789 Compartment Species Reaction Parameter EventNoDelay InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00790 Compartment Species Reaction Parameter EventNoDelay InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00791 Compartment Species Reaction Parameter EventNoDelay InitialAssignment Amount 2.2 2.3 2.4 3.1 +00792 Compartment Species Reaction Parameter InitialAssignment Concentration InitialValueReassigned 2.2 2.3 2.4 3.1 +00793 Compartment Species Reaction Parameter InitialAssignment Concentration InitialValueReassigned 2.2 2.3 2.4 3.1 +00794 Compartment Species Reaction Parameter InitialAssignment Concentration InitialValueReassigned 2.2 2.3 2.4 3.1 +00795 Compartment Species Reaction Parameter InitialAssignment Concentration InitialValueReassigned 2.2 2.3 2.4 3.1 +00796 Compartment Species Reaction Parameter InitialAssignment Concentration InitialValueReassigned 2.2 2.3 2.4 3.1 +00797 Compartment Species Reaction Parameter InitialAssignment Concentration InitialValueReassigned 2.2 2.3 2.4 3.1 +00798 Compartment Species Reaction Parameter InitialAssignment Concentration 2.2 2.3 2.4 3.1 +00799 Compartment Species Reaction Parameter InitialAssignment Concentration InitialValueReassigned 2.2 2.3 2.4 3.1 +00800 Compartment Species Reaction Parameter InitialAssignment Concentration InitialValueReassigned 2.2 2.3 2.4 3.1 +00801 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00802 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00803 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00804 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00805 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00806 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00807 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00808 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00809 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00810 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00811 Compartment Species Reaction Parameter Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00812 Compartment Species Reaction Parameter Amount NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00813 Compartment Species Reaction Parameter Amount NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00814 Compartment Species Reaction Parameter Amount NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00815 Compartment Species Reaction Parameter Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00816 Compartment Species Reaction Parameter Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00817 Compartment Species Reaction Parameter Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00818 Compartment Species Reaction Parameter Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00819 Compartment Species Reaction Parameter Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00820 Compartment Species Reaction Parameter Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00821 Compartment Species Reaction Parameter Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00822 Compartment Species Reaction Parameter Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00823 Compartment Species Reaction Parameter Amount BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00824 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00825 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00826 Compartment Species Reaction Parameter Amount NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +00827 StoichiometryMath Compartment Species Reaction Parameter Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00828 StoichiometryMath Compartment Species Reaction Parameter Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00829 StoichiometryMath Compartment Species Reaction Parameter Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00830 Compartment Species Reaction Parameter Amount LocalParameters 1.2 2.1 2.2 2.3 2.4 3.1 +00831 Compartment Species Reaction Amount LocalParameters 1.2 2.1 2.2 2.3 2.4 3.1 +00832 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00833 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00834 Compartment Species Reaction Parameter FunctionDefinition Amount 2.1 2.2 2.3 2.4 3.1 +00835 Compartment Species Reaction Parameter InitialAssignment Amount 2.2 2.3 2.4 3.1 +00836 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00837 Compartment Species Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00838 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00839 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00840 Compartment Species Reaction Parameter AssignmentRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00841 Compartment Species Reaction Parameter RateRule Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00842 Compartment Species Reaction Parameter RateRule Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00843 Compartment Species Reaction Parameter RateRule Amount 1.2 2.1 2.2 2.3 2.4 3.1 +00844 Compartment Species Reaction Parameter AlgebraicRule Amount ReversibleReaction InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00845 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00846 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00847 Compartment Species Reaction Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00848 Compartment Species Reaction Parameter EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00849 Compartment Species Reaction Parameter EventWithDelay Amount ReversibleReaction EventUsesTriggerTimeValues 2.1 2.2 2.3 2.4 3.1 +00850 Compartment Species Reaction Parameter EventWithDelay Amount EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00851 Compartment Species Reaction Parameter CSymbolTime Amount 2.1 2.2 2.3 2.4 3.1 +00852 Compartment Species Reaction Parameter CSymbolTime Amount 2.1 2.2 2.3 2.4 3.1 +00853 Compartment Species Reaction Parameter CSymbolTime Amount 2.1 2.2 2.3 2.4 3.1 +00854 Compartment Species Reaction Parameter FunctionDefinition CSymbolTime Amount 2.1 2.2 2.3 2.4 3.1 +00855 Compartment Species Reaction Parameter FunctionDefinition CSymbolTime Amount 2.1 2.2 2.3 2.4 3.1 +00856 Compartment Species Reaction Parameter FunctionDefinition CSymbolTime Amount 2.1 2.2 2.3 2.4 3.1 +00857 Compartment Species Reaction Parameter CSymbolTime Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00858 Compartment Species Reaction Parameter CSymbolTime Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00859 Compartment Species Reaction Parameter CSymbolTime Amount NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00860 Compartment Species Reaction Parameter CSymbolTime Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00861 Compartment Species Reaction Parameter CSymbolTime Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00862 Compartment Species Reaction Parameter CSymbolTime Concentration NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00863 Compartment Species Reaction Parameter CSymbolTime Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00864 Compartment Species Reaction Parameter CSymbolTime Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00865 Compartment Species Reaction Parameter CSymbolTime Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00866 Compartment Species Reaction Parameter CSymbolTime Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00867 Compartment Species Reaction Parameter CSymbolTime Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00868 Compartment Species Reaction Parameter CSymbolTime Amount BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00869 Compartment Species Reaction Parameter CSymbolTime BoundaryCondition Amount 2.1 2.2 2.3 2.4 3.1 +00870 Compartment Species Reaction Parameter Amount ReversibleReaction FastReaction 1.2 2.1 2.2 2.3 2.4 3.1 +00871 Compartment Species Reaction Parameter Amount FastReaction 1.2 2.1 2.2 2.3 2.4 3.1 +00872 Compartment Species Reaction Parameter Amount ReversibleReaction FastReaction BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00873 Compartment Species Reaction Parameter Amount ReversibleReaction FastReaction BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00874 Compartment Species Reaction Parameter Amount FastReaction BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00875 Compartment Species Reaction Parameter Amount FastReaction BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +00876 Compartment Species Reaction Parameter AlgebraicRule Amount ReversibleReaction 1.2 2.1 2.2 2.3 2.4 3.1 +00877 Compartment Species Reaction Parameter CSymbolTime InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00878 Compartment Species CSymbolTime Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00879 Compartment Species CSymbolTime Reaction Parameter InitialAssignment Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +00880 Compartment Species CSymbolTime Reaction Parameter AssignmentRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00881 Compartment Species CSymbolTime Reaction Parameter AssignmentRule Amount InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00882 Compartment Species Reaction Parameter CSymbolTime Amount ConstantSpecies BoundaryCondition 2.1 2.2 2.3 2.4 3.1 +00883 Compartment Species Reaction Parameter CSymbolTime EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00884 Compartment Species Reaction CSymbolTime Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00885 Compartment Species Reaction CSymbolTime Parameter EventNoDelay Amount 2.1 2.2 2.3 2.4 3.1 +00886 Compartment Species CSymbolTime Reaction Parameter EventWithDelay Amount 2.1 2.2 2.3 2.4 3.1 +00887 Compartment Species Reaction Parameter CSymbolTime EventWithDelay EventNoDelay Amount EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00888 Compartment Species CSymbolTime Reaction Parameter RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00889 Compartment Species Reaction Parameter CSymbolTime RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00890 Compartment Species Reaction CSymbolTime Parameter RateRule Amount 2.1 2.2 2.3 2.4 3.1 +00891 Parameter RateRule CSymbolTime NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00892 Parameter RateRule CSymbolTime NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00893 Parameter RateRule CSymbolTime NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00894 Compartment Species Reaction Parameter CSymbolTime Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00895 Compartment Species Reaction Parameter CSymbolTime Amount NonUnityStoichiometry 2.1 2.2 2.3 2.4 3.1 +00896 Compartment Species Reaction Parameter CSymbolTime Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00897 Compartment Species Reaction Parameter CSymbolTime Amount LocalParameters 2.1 2.2 2.3 2.4 3.1 +00898 StoichiometryMath Compartment Species Reaction Parameter CSymbolTime Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00899 StoichiometryMath Compartment Species Reaction Parameter CSymbolTime Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00900 StoichiometryMath Compartment Species Reaction Parameter CSymbolTime Amount LocalParameters AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00901 Compartment Parameter RateRule NonConstantCompartment NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00902 Compartment RateRule NonConstantCompartment NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00903 Compartment RateRule NonConstantCompartment NonUnityCompartment MultiCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00904 Compartment RateRule NonConstantCompartment NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00905 Compartment RateRule NonConstantCompartment NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00906 Compartment Parameter RateRule NonConstantCompartment NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00907 Compartment Parameter RateRule NonConstantCompartment NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00908 Compartment RateRule NonConstantCompartment NonUnityCompartment MultiCompartment 2.1 2.2 2.3 2.4 3.1 +00909 Compartment RateRule NonConstantCompartment NonUnityCompartment MultiCompartment 2.1 2.2 2.3 2.4 3.1 +00910 Compartment RateRule NonConstantCompartment NonUnityCompartment MultiCompartment 2.1 2.2 2.3 2.4 3.1 +00911 Compartment RateRule FunctionDefinition NonConstantCompartment NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00912 Compartment RateRule InitialAssignment NonConstantCompartment NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00913 Compartment RateRule InitialAssignment NonConstantCompartment NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00914 Compartment RateRule FunctionDefinition NonConstantCompartment NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00915 Compartment RateRule FunctionDefinition NonConstantCompartment NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00916 Compartment RateRule InitialAssignment NonConstantCompartment NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00917 Compartment RateRule InitialAssignment NonConstantCompartment NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00918 Compartment RateRule InitialAssignment NonConstantCompartment NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00919 Compartment RateRule InitialAssignment NonConstantCompartment NonUnityCompartment InitialValueReassigned 2.2 2.3 2.4 3.1 +00920 Parameter InitialAssignment InitialValueReassigned 2.2 2.3 2.4 3.1 +00921 Parameter InitialAssignment InitialValueReassigned 2.2 2.3 2.4 3.1 +00922 Parameter InitialAssignment 2.2 2.3 2.4 3.1 +00923 Parameter AssignmentRule InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00924 Parameter AssignmentRule InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00925 Parameter AssignmentRule 1.2 2.1 2.2 2.3 2.4 3.1 +00926 Compartment Species RateRule Concentration NonConstantCompartment NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00927 Compartment Species RateRule Amount NonConstantCompartment NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +00928 Compartment CSymbolTime Species Reaction Parameter EventNoDelay Amount EventT0Firing 3.1 +00929 Compartment CSymbolTime Species Reaction Parameter EventNoDelay Amount EventT0Firing 3.1 +00930 Compartment CSymbolTime Species EventNoDelay EventPriority Amount 3.1 +00931 Compartment CSymbolTime Species EventNoDelay EventPriority Amount 3.1 +00932 Compartment Species Reaction Parameter EventWithDelay Amount EventIsNotPersistent 3.1 +00933 Compartment Species Reaction Parameter EventWithDelay Amount EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +00934 CSymbolTime Compartment EventNoDelay EventPriority Species Amount EventIsPersistent 3.1 +00935 CSymbolTime Compartment EventNoDelay EventPriority Species Amount EventIsNotPersistent EventIsPersistent 3.1 +00936 AssignmentRule CSymbolTime Compartment EventWithDelay Species Concentration BoundaryCondition EventIsPersistent EventUsesAssignmentTimeValues InitialValueReassigned 2.4 3.1 +00937 AssignmentRule CSymbolDelay CSymbolTime Parameter NonConstantParameter InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00938 AssignmentRule CSymbolDelay CSymbolTime Compartment InitialAssignment Parameter Reaction Species Amount NonConstantParameter InitialValueReassigned 2.2 2.3 2.4 3.1 +00939 AssignmentRule CSymbolDelay Compartment Parameter Reaction Species Amount NonConstantParameter InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00940 AssignmentRule CSymbolDelay CSymbolTime Compartment InitialAssignment Parameter Species Amount NonConstantParameter InitialValueReassigned 2.2 2.3 2.4 3.1 +00941 AssignmentRule CSymbolDelay CSymbolTime InitialAssignment Parameter NonConstantParameter 2.2 2.3 2.4 3.1 +00942 AssignmentRule CSymbolDelay CSymbolTime Compartment InitialAssignment Parameter Species Amount NonConstantParameter 2.2 2.3 2.4 3.1 +00943 AssignmentRule CSymbolDelay CSymbolTime InitialAssignment Parameter NonConstantParameter 2.2 2.3 2.4 3.1 +00944 Compartment EventNoDelay Parameter Reaction Species Amount NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00945 Compartment EventNoDelay Parameter Reaction Species Amount NonConstantCompartment NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00946 AssignmentRule Compartment EventNoDelay Parameter Reaction Species Amount NonConstantCompartment NonConstantParameter NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00947 Compartment EventNoDelay Parameter Reaction Species Concentration NonConstantCompartment NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00948 AssignmentRule Compartment EventNoDelay Parameter Reaction Species Concentration NonConstantCompartment NonConstantParameter NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00949 Parameter 1.2 2.1 2.2 2.3 2.4 3.1 +00950 InitialAssignment Parameter InitialValueReassigned 2.2 2.3 2.4 3.1 +00951 Parameter 1.2 2.1 2.2 2.3 2.4 3.1 +00952 AssignmentRule CSymbolTime EventNoDelay EventPriority Parameter EventIsNotPersistent NonConstantParameter RandomEventExecution 3.1 +00953 AssignmentRule CSymbolTime EventNoDelay Parameter NonConstantParameter EventIsNotPersistent InitialValueReassigned 3.1 +00954 AssignmentRule Parameter InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +00955 AssignmentRule CSymbolTime Parameter NonConstantParameter InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00956 InitialAssignment Parameter InitialValueReassigned 2.2 2.3 2.4 3.1 +00957 AssignmentRule Parameter NonConstantParameter InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00958 InitialAssignment Parameter InitialValueReassigned 2.2 2.3 2.4 3.1 +00959 AssignmentRule CSymbolTime Parameter NonConstantParameter InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00960 CSymbolAvogadro InitialAssignment Parameter InitialValueReassigned 3.1 +00961 AssignmentRule CSymbolAvogadro Parameter InitialValueReassigned 3.1 +00962 AssignmentRule CSymbolTime EventNoDelay EventPriority Parameter EventIsNotPersistent NonConstantParameter RandomEventExecution 3.1 +00963 CSymbolTime EventNoDelay EventPriority Parameter EventIsNotPersistent NonConstantParameter 3.1 +00964 AssignmentRule CSymbolTime EventNoDelay EventPriority Parameter EventIsNotPersistent NonConstantParameter RandomEventExecution 3.1 +00965 AssignmentRule CSymbolTime EventNoDelay EventPriority Parameter EventIsNotPersistent EventIsPersistent EventUsesTriggerTimeValues NonConstantParameter RandomEventExecution 3.1 Parameter EventNoDelay EventPriority AssignmentRule CSymbolTime 3.1 +00966 AssignmentRule CSymbolTime EventNoDelay EventPriority FunctionDefinition Parameter EventIsNotPersistent EventIsPersistent EventUsesTriggerTimeValues NonConstantParameter RandomEventExecution 3.1 +00967 CSymbolTime EventNoDelay EventPriority Parameter NonConstantParameter EventIsNotPersistent 3.1 +00968 StoichiometryMath Compartment Parameter Reaction Species Amount AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00969 Compartment InitialAssignment Parameter Reaction Species Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 3.1 +00970 AssignmentRule Compartment Parameter Reaction Species Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 3.1 +00971 AssignmentRule Compartment Parameter Reaction Species Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 3.1 +00972 Compartment EventNoDelay Parameter Reaction Species Amount AssignedVariableStoichiometry NonUnityStoichiometry 3.1 +00973 StoichiometryMath Compartment Parameter RateRule Reaction Species Amount AssignedVariableStoichiometry NonConstantParameter NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00974 AssignmentRule Compartment InitialAssignment Parameter RateRule Reaction Species Amount InitialValueReassigned NonConstantParameter SpeciesReferenceInMath 3.1 +00975 Compartment Parameter Reaction Species Amount ConversionFactors NonUnityStoichiometry 3.1 +00976 Compartment Parameter Reaction Species Amount ConversionFactors NonUnityStoichiometry 3.1 +00977 Compartment Parameter Reaction Species Amount ConversionFactors NonUnityStoichiometry 3.1 +00978 CSymbolTime EventNoDelay EventPriority Parameter EventIsNotPersistent EventIsPersistent EventUsesAssignmentTimeValues EventUsesTriggerTimeValues NonConstantParameter 3.1 +00979 CSymbolTime EventNoDelay Parameter NonConstantParameter 2.1 2.2 2.3 2.4 3.1 +00980 CSymbolTime EventWithDelay Parameter EventUsesAssignmentTimeValues NonConstantParameter 2.4 3.1 +00981 AssignmentRule CSymbolDelay CSymbolTime Compartment Parameter RateRule NonConstantParameter InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00982 AssignmentRule CSymbolDelay CSymbolTime Parameter RateRule NonConstantParameter InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00983 AlgebraicRule AssignmentRule CSymbolDelay CSymbolTime Parameter RateRule NonConstantParameter InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00984 AssignmentRule CSymbolDelay CSymbolTime Compartment EventNoDelay Parameter RateRule NonConstantParameter InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00985 AssignmentRule CSymbolDelay Parameter RateRule NonConstantParameter InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +00986 Compartment Reaction Species Amount FastReaction HasOnlySubstanceUnits 1.2 2.1 2.2 2.3 2.4 3.1 +00987 CSymbolTime Compartment EventNoDelay Parameter Reaction Species Amount FastReaction NonConstantParameter HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00988 Compartment EventWithDelay EventNoDelay Parameter Reaction Species Amount EventIsPersistent FastReaction NonConstantParameter HasOnlySubstanceUnits 2.1 2.2 2.3 2.4 3.1 +00989 StoichiometryMath Compartment Parameter Reaction Species Amount AssignedVariableStoichiometry HasOnlySubstanceUnits NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00990 StoichiometryMath Compartment Parameter RateRule Reaction Species Amount AssignedVariableStoichiometry NonUnityStoichiometry NonConstantParameter 2.1 2.2 2.3 2.4 +00991 StoichiometryMath Compartment EventNoDelay Parameter Reaction Species Amount AssignedVariableStoichiometry NonUnityStoichiometry NonConstantParameter 2.1 2.2 2.3 2.4 +00992 StoichiometryMath AssignmentRule Compartment Parameter Reaction Species Amount AssignedVariableStoichiometry HasOnlySubstanceUnits InitialValueReassigned NonUnityStoichiometry NonConstantParameter 2.1 2.2 2.3 2.4 +00993 StoichiometryMath AlgebraicRule Compartment Parameter Reaction Species Amount AssignedVariableStoichiometry InitialValueReassigned NonConstantParameter NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00994 StoichiometryMath CSymbolTime Compartment Parameter Reaction Species Amount AssignedVariableStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +00995 EventNoDelay Parameter EventT0Firing NonConstantParameter 3.1 +00996 EventNoDelay Parameter RateRule EventT0Firing NonConstantParameter 3.1 +00997 EventNoDelay EventPriority Parameter EventT0Firing NonConstantParameter 3.1 +00998 Compartment Reaction Species Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +00999 AssignmentRule Compartment Parameter RateRule Species Amount HasOnlySubstanceUnits MultiCompartment NonConstantCompartment NonConstantParameter NonUnityCompartment InitialValueReassigned 2.1 2.2 2.3 2.4 3.1 +01000 AssignmentRule CSymbolAvogadro CSymbolTime Compartment EventNoDelay EventPriority EventWithDelay FunctionDefinition InitialAssignment Parameter RateRule Reaction Species Amount AssignedConstantStoichiometry AssignedVariableStoichiometry BoundaryCondition ConstantSpecies ConversionFactors EventIsNotPersistent EventIsPersistent EventT0Firing EventUsesAssignmentTimeValues EventUsesTriggerTimeValues HasOnlySubstanceUnits InitialValueReassigned LocalParameters MultiCompartment NonConstantCompartment NonConstantParameter NonUnityCompartment NonUnityStoichiometry ReversibleReaction SpeciesReferenceInMath 3.1 +01001 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01002 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01003 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01004 Compartment Species Reaction Parameter FunctionDefinition Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01005 Compartment Species Reaction Parameter FunctionDefinition Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01006 Compartment Species Reaction Parameter FunctionDefinition Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01007 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01008 Compartment Species Reaction Parameter RateRule Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01009 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01010 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01011 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01012 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01013 Compartment Species Reaction Parameter Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01014 Compartment Species Reaction Parameter AssignmentRule Amount HasOnlySubstanceUnits InitialValueReassigned NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01015 Compartment Species Reaction Parameter AssignmentRule Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01016 Compartment Species Reaction Parameter RateRule Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01017 Compartment Species Reaction Parameter RateRule Amount HasOnlySubstanceUnits NonUnityCompartment 2.1 2.2 2.3 2.4 3.1 +01018 Compartment Species Reaction Parameter Amount ReversibleReaction BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +01019 Compartment Species Reaction Parameter Amount ReversibleReaction BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +01020 Compartment Species Reaction Parameter Amount ReversibleReaction BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +01021 Compartment Species Reaction Parameter Amount ReversibleReaction BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +01022 Compartment Species Reaction Parameter Amount ReversibleReaction BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +01023 Compartment Species Reaction Parameter Amount ReversibleReaction BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +01024 Compartment Species Reaction Parameter Amount ReversibleReaction NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +01025 Compartment Species Reaction Parameter Amount ReversibleReaction NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +01026 Compartment Species Reaction Parameter Amount ReversibleReaction NonUnityStoichiometry 1.2 2.1 2.2 2.3 2.4 3.1 +01027 StoichiometryMath Compartment Species Reaction Parameter Amount ReversibleReaction AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +01028 StoichiometryMath Compartment Species Reaction Parameter Amount ReversibleReaction AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +01029 StoichiometryMath Compartment Species Reaction Parameter Amount ReversibleReaction AssignedConstantStoichiometry NonUnityStoichiometry 2.1 2.2 2.3 2.4 +01030 Compartment Species Reaction Parameter Amount ReversibleReaction LocalParameters 1.2 2.1 2.2 2.3 2.4 3.1 +01031 Compartment Species Reaction Amount ReversibleReaction LocalParameters 1.2 2.1 2.2 2.3 2.4 3.1 +01032 Compartment Species Reaction Parameter FunctionDefinition Amount ReversibleReaction 2.1 2.2 2.3 2.4 3.1 +01033 Compartment Species Reaction Parameter FunctionDefinition Amount ReversibleReaction 2.1 2.2 2.3 2.4 3.1 +01034 Compartment Species Reaction Parameter FunctionDefinition Amount ReversibleReaction 2.1 2.2 2.3 2.4 3.1 +01035 Compartment Species Reaction Parameter InitialAssignment Amount ReversibleReaction 2.2 2.3 2.4 3.1 +01036 Compartment Species Reaction Parameter InitialAssignment Amount ReversibleReaction InitialValueReassigned 2.2 2.3 2.4 3.1 +01037 Compartment Species Reaction Parameter InitialAssignment Amount ReversibleReaction InitialValueReassigned 2.2 2.3 2.4 3.1 +01038 Compartment Species Reaction Parameter AssignmentRule Amount ReversibleReaction InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +01039 Compartment Species Reaction Parameter AssignmentRule Amount ReversibleReaction InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +01040 Compartment Species Reaction Parameter AssignmentRule Amount ReversibleReaction InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +01041 Compartment Species Reaction Parameter RateRule Amount ReversibleReaction 1.2 2.1 2.2 2.3 2.4 3.1 +01042 Compartment Species Reaction Parameter RateRule Amount ReversibleReaction 1.2 2.1 2.2 2.3 2.4 3.1 +01043 Compartment Species Reaction Parameter RateRule Amount ReversibleReaction 1.2 2.1 2.2 2.3 2.4 3.1 +01044 Compartment Species Reaction Parameter AlgebraicRule Amount InitialValueReassigned 1.2 2.1 2.2 2.3 2.4 3.1 +01045 Compartment Species Reaction Parameter EventNoDelay Amount ReversibleReaction 2.1 2.2 2.3 2.4 3.1 +01046 Compartment Species Reaction Parameter EventNoDelay Amount ReversibleReaction 2.1 2.2 2.3 2.4 3.1 +01047 Compartment Species Reaction Parameter EventNoDelay Amount ReversibleReaction 2.1 2.2 2.3 2.4 3.1 +01048 Compartment Species Reaction Parameter EventWithDelay Amount ReversibleReaction 2.1 2.2 2.3 2.4 3.1 +01049 Compartment Species Reaction Parameter EventWithDelay Amount ReversibleReaction EventUsesTriggerTimeValues 2.1 2.2 2.3 2.4 3.1 +01050 Compartment Species Reaction Parameter EventWithDelay Amount ReversibleReaction EventIsPersistent 2.1 2.2 2.3 2.4 3.1 +01051 Compartment Species Reaction Parameter Amount FastReaction 1.2 2.1 2.2 2.3 2.4 3.1 +01052 Compartment Species Reaction Parameter Amount FastReaction BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +01053 Compartment Species Reaction Parameter Amount FastReaction BoundaryCondition 1.2 2.1 2.2 2.3 2.4 3.1 +01054 Compartment Species Reaction Parameter AlgebraicRule Amount 1.2 2.1 2.2 2.3 2.4 3.1 +01055 Compartment Species Reaction Parameter Amount ReversibleReaction 1.2 2.1 2.2 2.3 2.4 3.1 +01056 Compartment Species Reaction Parameter Amount ReversibleReaction 1.2 2.1 2.2 2.3 2.4 3.1 +01057 Compartment Species Reaction Parameter Amount ReversibleReaction 1.2 2.1 2.2 2.3 2.4 3.1 +01058 Compartment Species Reaction Parameter Amount ReversibleReaction NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +01059 Compartment Species Reaction Parameter Amount ReversibleReaction NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +01060 Compartment Species Reaction Parameter Amount ReversibleReaction NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +01061 Compartment Species Reaction Parameter Concentration ReversibleReaction NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +01062 Compartment Species Reaction Parameter Concentration ReversibleReaction NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +01063 Compartment Species Reaction Parameter Concentration ReversibleReaction NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +01064 InitialAssignment Compartment Species Reaction Parameter InitialValueReassigned Amount ReversibleReaction AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01065 InitialAssignment Compartment Species Reaction Parameter InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01066 InitialAssignment Compartment Species Reaction Parameter InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01067 InitialAssignment Compartment Species Reaction Parameter InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01068 InitialAssignment Compartment Species Reaction Parameter FunctionDefinition InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01069 InitialAssignment Compartment Species Reaction Parameter FunctionDefinition InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01070 InitialAssignment Compartment Species Reaction Parameter FunctionDefinition InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01071 InitialAssignment Compartment Species Reaction Parameter EventNoDelay InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01072 InitialAssignment Compartment Species Reaction Parameter EventNoDelay InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01073 InitialAssignment Compartment Species Reaction Parameter EventNoDelay InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01074 InitialAssignment Compartment Species Reaction Parameter EventWithDelay InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01075 InitialAssignment Compartment Species Reaction Parameter EventWithDelay InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01076 InitialAssignment Compartment Species Reaction Parameter EventWithDelay InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01077 InitialAssignment Compartment Species Reaction Parameter InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 3.1 +01078 InitialAssignment Compartment Species Reaction Parameter InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 3.1 +01079 InitialAssignment Compartment Species Reaction Parameter InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 3.1 +01080 InitialAssignment Compartment Species Reaction Parameter InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 3.1 +01081 InitialAssignment Compartment Species Reaction Parameter InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 3.1 +01082 InitialAssignment Compartment Species Reaction Parameter InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 3.1 +01083 InitialAssignment Compartment Species Reaction Parameter AlgebraicRule InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01084 InitialAssignment Compartment Species Reaction Parameter AlgebraicRule InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01085 InitialAssignment Compartment Species Reaction Parameter AlgebraicRule InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01086 InitialAssignment Compartment Species Reaction Parameter AlgebraicRule InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01087 InitialAssignment Compartment Species Reaction Parameter AssignmentRule InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 3.1 +01088 InitialAssignment Compartment Species Reaction Parameter AssignmentRule InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 3.1 +01089 InitialAssignment Compartment Species Reaction Parameter RateRule InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01090 InitialAssignment Compartment Species Reaction Parameter RateRule InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01091 InitialAssignment Compartment Species Reaction Parameter FunctionDefinition RateRule InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01092 InitialAssignment Compartment Species Reaction Parameter RateRule AssignmentRule InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 3.1 +01093 InitialAssignment Compartment Species Reaction Parameter RateRule InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry InitialValueReassigned 3.1 +01094 InitialAssignment Compartment Species Reaction Parameter RateRule EventNoDelay InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01095 InitialAssignment Compartment Species Reaction Parameter RateRule EventWithDelay InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01096 InitialAssignment Compartment Species Reaction Parameter InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01097 InitialAssignment Compartment Species Reaction Parameter InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01098 InitialAssignment Compartment Species Reaction Parameter InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01099 InitialAssignment Compartment Species Reaction Parameter CSymbolTime InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01100 Compartment Species Reaction Parameter CSymbolTime InitialAssignment InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01101 Compartment Species Reaction Parameter CSymbolTime InitialAssignment InitialValueReassigned Amount LocalParameters AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01102 Compartment InitialAssignment Parameter Reaction Species InitialValueReassigned Amount AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01103 Compartment Parameter RateRule Reaction Species Amount AssignedVariableStoichiometry NonUnityStoichiometry 3.1 +01104 AssignmentRule Compartment Parameter Reaction Species Amount AssignedVariableStoichiometry InitialValueReassigned NonUnityStoichiometry HasOnlySubstanceUnits 3.1 +01105 AssignmentRule Compartment Parameter RateRule Reaction Species Amount AssignedVariableStoichiometry NonUnityStoichiometry NonConstantParameter InitialValueReassigned 3.1 +01106 AssignmentRule Compartment EventNoDelay Parameter Reaction Species Amount AssignedVariableStoichiometry NonUnityStoichiometry NonConstantParameter InitialValueReassigned 3.1 +01107 AssignmentRule Compartment Parameter Reaction Species InitialValueReassigned Amount AssignedVariableStoichiometry NonUnityStoichiometry NonConstantParameter HasOnlySubstanceUnits 3.1 +01108 AlgebraicRule AssignmentRule Compartment Parameter Reaction Species InitialValueReassigned Amount AssignedVariableStoichiometry InitialValueReassigned NonConstantParameter NonUnityStoichiometry 3.1 +01109 AssignmentRule CSymbolTime Compartment Parameter Reaction Species InitialValueReassigned Amount AssignedVariableStoichiometry NonUnityStoichiometry 3.1 +01110 Compartment Species Reaction Parameter InitialAssignment InitialValueReassigned Amount ReversibleReaction AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01111 InitialAssignment Compartment Species Reaction Parameter InitialValueReassigned Amount ReversibleReaction AssignedConstantStoichiometry NonUnityStoichiometry 3.1 +01112 InitialAssignment Parameter InitialValueReassigned 2.2 2.3 2.4 3.1 +01113 InitialAssignment Parameter InitialValueReassigned 2.2 2.3 2.4 3.1 +01114 InitialAssignment Parameter InitialValueReassigned 2.2 2.3 2.4 3.1 +01115 InitialAssignment Parameter InitialValueReassigned 2.2 2.3 2.4 3.1 +01116 InitialAssignment Parameter InitialValueReassigned 2.2 2.3 2.4 3.1 +01117 Compartment RateRule Species Amount ConstantSpecies NonConstantCompartment NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +01118 Compartment RateRule Species Amount BoundaryCondition ConstantSpecies NonConstantCompartment NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +01119 CSymbolTime EventPriority EventWithDelay Parameter NonConstantParameter 3.1 +01120 Compartment EventWithDelay RateRule Species Amount EventT0Firing HasOnlySubstanceUnits NonConstantCompartment NonUnityCompartment 3.1 +01121 AssignmentRule CSymbolAvogadro CSymbolTime Compartment FunctionDefinition InitialAssignment Parameter RateRule Reaction Species Amount AssignedConstantStoichiometry AssignedVariableStoichiometry BoundaryCondition ConstantSpecies ConversionFactors HasOnlySubstanceUnits InitialValueReassigned LocalParameters MultiCompartment NonConstantCompartment NonConstantParameter NonUnityCompartment NonUnityStoichiometry SpeciesReferenceInMath 3.1 +01122 Compartment RateRule Reaction Species Amount BoundaryCondition NonConstantCompartment NonUnityCompartment 1.2 2.1 2.2 2.3 2.4 3.1 +01123 Compartment RateRule Reaction Species Amount BoundaryCondition HasOnlySubstanceUnits NonConstantCompartment NonUnityCompartment 3.1 +01124 Parameter comp:ModelDefinition comp:ReplacedElement comp:Submodel 3.1 +01125 Parameter comp:ModelDefinition comp:Port comp:ReplacedElement comp:Submodel 3.1 +01126 Parameter comp:ModelDefinition comp:Port comp:ReplacedElement comp:Submodel comp:SubmodelOutput 3.1 +01127 InitialAssignment Parameter RateRule comp:ModelDefinition comp:Port comp:ReplacedElement comp:Submodel InitialValueReassigned NonConstantParameter comp:SubmodelOutput 3.1 +01128 Parameter comp:ModelDefinition comp:ReplacedBy comp:Submodel 3.1 +01129 Compartment Species comp:ModelDefinition comp:Submodel Amount ConstantSpecies MultiCompartment comp:SubmodelOutput 3.1 +01130 Compartment Species comp:ModelDefinition comp:ReplacedElement comp:SBaseRef comp:Submodel Concentration ConstantSpecies NonUnityCompartment MultiCompartment comp:SubmodelOutput 3.1 +01131 Compartment Species comp:ModelDefinition comp:ReplacedElement comp:SBaseRef comp:Submodel Concentration ConstantSpecies MultiCompartment NonUnityCompartment comp:SubmodelOutput 3.1 +01132 Compartment Species comp:ModelDefinition comp:ReplacedElement comp:SBaseRef comp:Submodel Concentration ConstantSpecies MultiCompartment NonUnityCompartment comp:SubmodelOutput 3.1 +01133 Compartment Species comp:ModelDefinition comp:ReplacedBy comp:ReplacedElement comp:SBaseRef comp:Submodel Concentration ConstantSpecies MultiCompartment NonUnityCompartment comp:SubmodelOutput 3.1 +01134 Compartment Species comp:ModelDefinition comp:Port comp:ReplacedBy comp:ReplacedElement comp:SBaseRef comp:Submodel Concentration MultiCompartment NonUnityCompartment comp:SubmodelOutput 3.1 +01135 Parameter comp:ModelDefinition comp:ReplacedBy comp:SBaseRef comp:Submodel 3.1 +01136 Parameter comp:ModelDefinition comp:ReplacedBy comp:SBaseRef comp:ReplacedElement comp:Submodel 3.1 +01137 AssignmentRule Parameter comp:ModelDefinition comp:ReplacedElement comp:Submodel InitialValueReassigned comp:ConversionFactor 3.1 +01138 AssignmentRule Parameter comp:ModelDefinition comp:ReplacedElement comp:Submodel InitialValueReassigned NonConstantParameter comp:ConversionFactor comp:SubmodelOutput 3.1 +01139 Parameter RateRule comp:ModelDefinition comp:ReplacedElement comp:Submodel NonConstantParameter comp:ConversionFactor 3.1 +01140 Compartment Parameter RateRule Species comp:ModelDefinition comp:ReplacedElement comp:Submodel Amount HasOnlySubstanceUnits MultiCompartment comp:ConversionFactor 3.1 +01141 Compartment Parameter RateRule comp:ModelDefinition comp:ReplacedElement comp:Submodel NonConstantCompartment NonUnityCompartment comp:ConversionFactor 3.1 +01142 AlgebraicRule AssignmentRule CSymbolDelay CSymbolTime Compartment EventWithDelay InitialAssignment Parameter RateRule Reaction Species comp:ModelDefinition comp:ReplacedBy comp:ReplacedElement comp:Submodel Amount HasOnlySubstanceUnits InitialValueReassigned NonConstantParameter comp:TimeConversionFactor 3.1 +01143 Compartment Parameter Reaction Species comp:ModelDefinition comp:Submodel Amount HasOnlySubstanceUnits comp:ExtentConversionFactor comp:SubmodelOutput 3.1 +01144 CSymbolTime Compartment Parameter Reaction Species comp:ModelDefinition comp:ReplacedElement comp:Submodel Amount HasOnlySubstanceUnits comp:ExtentConversionFactor comp:SubmodelOutput comp:TimeConversionFactor 3.1 +01145 Compartment Parameter Reaction Species comp:ModelDefinition comp:Submodel Amount HasOnlySubstanceUnits comp:ExtentConversionFactor comp:SubmodelOutput 3.1 +01146 AssignmentRule CSymbolTime Parameter comp:ModelDefinition comp:Submodel InitialValueReassigned NonConstantParameter comp:SubmodelOutput comp:TimeConversionFactor 3.1 +01147 AssignmentRule CSymbolTime InitialAssignment Parameter comp:ModelDefinition comp:Submodel InitialValueReassigned NonConstantParameter comp:SubmodelOutput comp:TimeConversionFactor 3.1 +01148 CSymbolTime Compartment Parameter Reaction Species comp:ModelDefinition comp:Submodel Amount HasOnlySubstanceUnits comp:ExtentConversionFactor comp:SubmodelOutput comp:TimeConversionFactor 3.1 +01149 Parameter comp:Deletion comp:ModelDefinition comp:ReplacedElement comp:Submodel 3.1 +01150 Parameter RateRule comp:ModelDefinition comp:ReplacedElement comp:Submodel NonConstantParameter 3.1 +01151 Parameter RateRule comp:Deletion comp:ModelDefinition comp:ReplacedElement comp:Submodel NonConstantParameter 3.1 +01152 CSymbolTime EventNoDelay Parameter comp:ModelDefinition comp:ReplacedElement comp:Submodel NonConstantParameter comp:ConversionFactor 3.1 +01153 InitialAssignment Parameter comp:Deletion comp:ModelDefinition comp:Port comp:ReplacedElement comp:SBaseRef comp:Submodel InitialValueReassigned comp:SubmodelOutput 3.1 +01154 Parameter comp:Deletion comp:ModelDefinition comp:Submodel comp:SubmodelOutput 3.1 +01155 CSymbolTime EventNoDelay Parameter comp:Deletion comp:ModelDefinition comp:Submodel NonConstantParameter comp:SubmodelOutput 3.1 +01156 CSymbolTime EventWithDelay Parameter comp:Deletion comp:ModelDefinition comp:Submodel NonConstantParameter comp:SubmodelOutput 3.1 +01157 CSymbolTime EventNoDelay Parameter comp:Deletion comp:ModelDefinition comp:Submodel NonConstantParameter comp:SubmodelOutput 3.1 +01158 CSymbolTime EventNoDelay Parameter comp:Deletion comp:ModelDefinition comp:Submodel NonConstantParameter comp:SubmodelOutput 3.1 +01159 Compartment Parameter Reaction Species comp:Deletion comp:ModelDefinition comp:Submodel Amount HasOnlySubstanceUnits comp:SubmodelOutput 3.1 +01160 Compartment Parameter Reaction Species comp:ModelDefinition comp:ReplacedElement comp:Submodel Amount HasOnlySubstanceUnits comp:SubmodelOutput 3.1 +01161 Compartment Parameter Reaction Species comp:ModelDefinition comp:Submodel Amount HasOnlySubstanceUnits LocalParameters comp:SubmodelOutput 3.1 +01162 Parameter comp:Deletion comp:ModelDefinition comp:Port comp:ReplacedElement comp:Submodel 3.1 +01163 Parameter RateRule comp:ModelDefinition comp:Port comp:ReplacedElement comp:Submodel NonConstantParameter 3.1 +01164 Compartment Reaction Species comp:ModelDefinition comp:Submodel Amount MultiCompartment comp:SubmodelOutput 3.1 +01165 Compartment Reaction Species comp:Deletion comp:ExternalModelDefinition comp:ModelDefinition comp:Port comp:ReplacedElement comp:Submodel Amount comp:SubmodelOutput 3.1 +01166 Compartment Reaction Species comp:Deletion comp:ModelDefinition comp:Port comp:ReplacedElement comp:Submodel Amount 3.1 +01167 Compartment Reaction Species comp:ExternalModelDefinition comp:Submodel Amount comp:SubmodelOutput 3.1 +01168 Compartment Reaction Species comp:ExternalModelDefinition comp:Submodel Amount comp:SubmodelOutput 3.1 +01169 AssignmentRule Compartment EventNoDelay EventPriority Parameter RateRule Reaction Species comp:Deletion comp:ModelDefinition comp:Port comp:ReplacedElement comp:Submodel Amount InitialValueReassigned NonConstantParameter comp:ConversionFactor comp:ExtentConversionFactor comp:SubmodelOutput comp:TimeConversionFactor 3.1 +01170 CSymbolTime Compartment Parameter Reaction Species comp:ModelDefinition comp:ReplacedBy comp:ReplacedElement comp:Submodel Amount HasOnlySubstanceUnits comp:TimeConversionFactor 3.1 +01171 AssignmentRule CSymbolTime Parameter comp:ModelDefinition comp:ReplacedElement comp:Submodel InitialValueReassigned NonConstantParameter comp:TimeConversionFactor 3.1 +01172 CSymbolTime Parameter RateRule comp:ModelDefinition comp:ReplacedElement comp:Submodel NonConstantParameter comp:TimeConversionFactor 3.1 +01173 AssignmentRule CSymbolDelay CSymbolTime Parameter comp:ModelDefinition comp:ReplacedElement comp:Submodel InitialValueReassigned NonConstantParameter comp:TimeConversionFactor 3.1 +01174 AlgebraicRule CSymbolDelay CSymbolTime InitialAssignment Parameter comp:ModelDefinition comp:ReplacedElement comp:Submodel InitialValueReassigned NonConstantParameter comp:TimeConversionFactor 3.1 +01175 CSymbolTime Compartment Parameter Reaction Species comp:ModelDefinition comp:ReplacedBy comp:ReplacedElement comp:Submodel Amount HasOnlySubstanceUnits comp:TimeConversionFactor 3.1 +01176 AssignmentRule CSymbolDelay CSymbolTime Compartment Parameter Reaction Species comp:ModelDefinition comp:ReplacedBy comp:ReplacedElement comp:Submodel Amount HasOnlySubstanceUnits InitialValueReassigned NonConstantParameter comp:TimeConversionFactor 3.1 +01177 CSymbolTime EventWithDelay Parameter comp:ModelDefinition comp:ReplacedElement comp:Submodel EventUsesTriggerTimeValues NonConstantParameter comp:TimeConversionFactor 3.1 +01178 AssignmentRule Compartment Parameter Reaction Species comp:ModelDefinition comp:Submodel Amount HasOnlySubstanceUnits InitialValueReassigned comp:ExtentConversionFactor comp:SubmodelOutput 3.1 +01179 CSymbolTime Parameter RateRule comp:ModelDefinition comp:ReplacedElement comp:Submodel NonConstantParameter comp:ConversionFactor comp:TimeConversionFactor 3.1 +01180 AssignmentRule Compartment Parameter Reaction Species comp:ModelDefinition comp:Submodel Amount HasOnlySubstanceUnits InitialValueReassigned comp:SubmodelOutput comp:TimeConversionFactor 3.1 +01181 AssignmentRule Compartment Parameter Reaction Species comp:ModelDefinition comp:Submodel Amount HasOnlySubstanceUnits InitialValueReassigned comp:ExtentConversionFactor comp:SubmodelOutput comp:TimeConversionFactor 3.1 +01182 AssignmentRule Compartment Parameter Reaction Species comp:ModelDefinition comp:ReplacedElement comp:Submodel Amount HasOnlySubstanceUnits InitialValueReassigned MultiCompartment comp:ExtentConversionFactor comp:SubmodelOutput comp:TimeConversionFactor 3.1 +01183 AssignmentRule Compartment Parameter Reaction Species comp:ModelDefinition comp:ReplacedElement comp:Submodel Amount HasOnlySubstanceUnits InitialValueReassigned MultiCompartment comp:ConversionFactor comp:ExtentConversionFactor comp:SubmodelOutput comp:TimeConversionFactor 3.1 +01184 Compartment InitialAssignment Parameter Reaction Species Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +01185 Compartment InitialAssignment Parameter Reaction Species Amount InitialValueReassigned 2.2 2.3 2.4 3.1 +01186 Compartment Reaction Species fbc:FluxBound fbc:FluxObjective fbc:Objective BoundaryCondition NonUnityStoichiometry fbc:BoundGreaterEqual fbc:BoundLessEqual fbc:MaximizeObjective 3.1 +01187 Compartment Reaction Species fbc:FluxBound fbc:FluxObjective fbc:Objective BoundaryCondition NonUnityStoichiometry fbc:BoundGreaterEqual fbc:BoundLessEqual fbc:MinimizeObjective 3.1 +01188 Compartment Reaction Species fbc:FluxBound fbc:FluxObjective fbc:Objective BoundaryCondition NonUnityStoichiometry fbc:BoundGreaterEqual fbc:BoundLessEqual fbc:MaximizeObjective 3.1 +01189 Compartment Reaction Species fbc:FluxBound fbc:FluxObjective fbc:Objective BoundaryCondition NonUnityStoichiometry fbc:BoundGreaterEqual fbc:BoundLessEqual fbc:MinimizeObjective 3.1 +01190 Compartment Reaction Species fbc:FluxBound fbc:FluxObjective fbc:Objective BoundaryCondition NonUnityStoichiometry fbc:BoundGreaterEqual fbc:BoundLessEqual fbc:MaximizeObjective 3.1 +01191 Compartment Reaction Species fbc:FluxBound fbc:FluxObjective fbc:Objective BoundaryCondition NonUnityStoichiometry fbc:BoundGreaterEqual fbc:BoundLessEqual fbc:MaximizeObjective fbc:MinimizeObjective 3.1 +01192 Compartment Reaction Species fbc:FluxBound fbc:FluxObjective fbc:Objective BoundaryCondition NonUnityStoichiometry fbc:BoundGreaterEqual fbc:BoundLessEqual fbc:MaximizeObjective 3.1 +01193 Compartment Reaction Species fbc:FluxBound fbc:FluxObjective fbc:Objective BoundaryCondition NonUnityStoichiometry fbc:BoundGreaterEqual fbc:BoundLessEqual fbc:MaximizeObjective 3.1 +01194 Compartment Reaction Species fbc:FluxBound fbc:FluxObjective fbc:Objective BoundaryCondition NonUnityStoichiometry fbc:BoundGreaterEqual fbc:BoundLessEqual fbc:MaximizeObjective 3.1 +01195 Compartment Reaction Species fbc:FluxBound fbc:FluxObjective fbc:Objective BoundaryCondition NonUnityStoichiometry fbc:BoundEqual fbc:BoundGreaterEqual fbc:BoundLessEqual fbc:MaximizeObjective 3.1 +01196 Compartment Reaction Species fbc:FluxBound fbc:FluxObjective fbc:Objective BoundaryCondition NonUnityStoichiometry fbc:BoundGreaterEqual fbc:BoundLessEqual fbc:MaximizeObjective 3.1 diff --git a/models/sbml-test-suite/cases/semantic/00001/00001-results.csv b/models/sbml-test-suite/cases/semantic/00001/00001-results.csv new file mode 100644 index 0000000000..3abe477ec9 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00001/00001-results.csv @@ -0,0 +1,52 @@ +time,S1,S2 +0,0.00015,0 +0.1,0.0001357256127053939,1.427438729460607e-005 +0.2,0.0001228096129616973,2.719038703830272e-005 +0.3,0.0001111227331022577,3.887726689774233e-005 +0.4,0.0001005480069053459,4.945199309465411e-005 +0.5,9.097959895689501e-005,5.902040104310499e-005 +0.6,8.232174541410396e-005,6.767825458589604e-005 +0.7,7.448779556871142e-005,7.551220443128858e-005 +0.8,6.739934461758323e-005,8.260065538241677e-005 +0.9,6.098544896108986e-005,8.901455103891014e-005 +1,5.518191617571635e-005,9.481808382428365e-005 +1.1,4.993066255471193e-005,0.0001000693374452881 +1.2,4.517913178683031e-005,0.0001048208682131697 +1.3,4.087976895510189e-005,0.0001091202310448981 +1.4,3.698954459124097e-005,0.000113010455408759 +1.5,3.346952402226447e-005,0.0001165304759777355 +1.6,3.028447769919831e-005,0.0001197155223008017 +1.7,2.740252860791019e-005,0.0001225974713920898 +1.8,2.479483323323798e-005,0.000125205166766762 +1.9,2.243529288339526e-005,0.0001275647071166047 +2,2.03002924854919e-005,0.0001296997075145081 +2.1,1.836846423794729e-005,0.0001316315357620527 +2.2,1.662047375435008e-005,0.0001333795262456499 +2.3,1.503882655842056e-005,0.0001349611734415794 +2.4,1.360769299341187e-005,0.0001363923070065881 +2.5,1.231274979358482e-005,0.0001376872502064152 +2.6,1.114103673215008e-005,0.0001388589632678499 +2.7,1.008082691096246e-005,0.0001399191730890375 +2.8,9.121509393782692e-006,0.0001408784906062173 +2.9,8.253483008461082e-006,0.0001417465169915389 +3,7.468060255179591e-006,0.0001425319397448204 +3.1,6.757380359033671e-006,0.0001432426196409663 +3.2,6.114330596754931e-006,0.0001438856694032451 +3.3,5.532475110186e-006,0.000144467524889814 +3.4,5.00599049404891e-006,0.0001449940095059511 +3.5,4.529607513347775e-006,0.0001454703924866522 +3.6,4.098558367093884e-006,0.0001459014416329061 +3.7,3.708528970550908e-006,0.0001462914710294491 +3.8,3.355615778424839e-006,0.0001466443842215752 +3.9,3.036286716870657e-006,0.0001469637132831294 +4,2.747345833310127e-006,0.0001472526541666899 +4.1,2.485901310264186e-006,0.0001475140986897358 +4.2,2.249336523071655e-006,0.0001477506634769283 +4.3,2.03528385183014e-006,0.0001479647161481699 +4.4,1.841600985460266e-006,0.0001481583990145397 +4.5,1.666349480736346e-006,0.0001483336505192637 +4.6,1.507775361695036e-006,0.000148492224638305 +4.7,1.364291565254372e-006,0.0001486357084347456 +4.8,1.234462057353003e-006,0.000148765537942647 +4.9,1.116987460638651e-006,0.0001488830125393614 +5,1.01069204986282e-006,0.0001489893079501372 diff --git a/models/sbml-test-suite/cases/semantic/00001/00001-sbml-l1v2.xml b/models/sbml-test-suite/cases/semantic/00001/00001-sbml-l1v2.xml new file mode 100644 index 0000000000..a094410615 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00001/00001-sbml-l1v2.xml @@ -0,0 +1,26 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00001/00001-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00001/00001-sbml-l2v4.xml new file mode 100644 index 0000000000..60c5c4af0f --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00001/00001-sbml-l2v4.xml @@ -0,0 +1,35 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + compartment + 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Originally created by libAntimony 1.4 (using libSBML 5.0.0-a1)

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Originally created by libAntimony 1.4 (using libSBML 5.0.0-a1)

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a/models/sbml-test-suite/cases/semantic/00944/00944-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00944/00944-sbml-l2v4.xml new file mode 100644 index 0000000000..ecf0072e06 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00944/00944-sbml-l2v4.xml @@ -0,0 +1,54 @@ + + + + + + + + + + + + + + + + + + + + + + + + C + k1 + + S1 + + + + + + + + + + + + S1 + 2.1 + + + + + + + 10 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00944/00944-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00944/00944-sbml-l3v1.xml new file mode 100644 index 0000000000..6656b4e0d2 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00944/00944-sbml-l3v1.xml @@ -0,0 +1,55 @@ + + + + + + + + + + + + + + + + + + + + + + + + + C + k1 + + S1 + + + + + + + + + + + + S1 + 2.1 + + + + + + + 10 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00944/00944-settings.txt b/models/sbml-test-suite/cases/semantic/00944/00944-settings.txt new file mode 100644 index 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+++ b/models/sbml-test-suite/cases/semantic/00946/00946-sbml-l3v1.xml @@ -0,0 +1,63 @@ + + + + + + + + + + + + + + + + + + fakeC + + + + + + + + + + + + + + + C + k1 + + S1 + + + + + + + + + + + + S1 + 2.1 + + + + + + + 10 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00946/00946-settings.txt b/models/sbml-test-suite/cases/semantic/00946/00946-settings.txt new file mode 100644 index 0000000000..4acca0df03 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00946/00946-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 3.0 +steps: 300 +variables: S1, C +absolute: 0.001 +relative: 0.0001 +amount: S1 +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00947/00947-results.csv b/models/sbml-test-suite/cases/semantic/00947/00947-results.csv new file mode 100644 index 0000000000..1833281950 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00947/00947-results.csv @@ -0,0 +1,302 @@ +time,S1,C +0,1,1 +0.01,1.009950496,1 +0.02,1.019803904,1 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300 +variables: S1, C +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: S1 diff --git a/models/sbml-test-suite/cases/semantic/00949/00949-results.csv b/models/sbml-test-suite/cases/semantic/00949/00949-results.csv new file mode 100644 index 0000000000..e10d2c450c --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00949/00949-results.csv @@ -0,0 +1,12 @@ +time,P +0,3.7 +0.1,3.7 +0.2,3.7 +0.3,3.7 +0.4,3.7 +0.5,3.7 +0.6,3.7 +0.7,3.7 +0.8,3.7 +0.9,3.7 +1,3.7 diff --git a/models/sbml-test-suite/cases/semantic/00949/00949-sbml-l1v2.xml b/models/sbml-test-suite/cases/semantic/00949/00949-sbml-l1v2.xml new file mode 100644 index 0000000000..f5f54cf6ab --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00949/00949-sbml-l1v2.xml @@ -0,0 +1,16 @@ + + + + + +

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Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

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Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

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Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00950/00950-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00950/00950-sbml-l3v1.xml new file mode 100644 index 0000000000..22d7f37f84 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00950/00950-sbml-l3v1.xml @@ -0,0 +1,35 @@ + + + + + +

Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00950/00950-settings.txt b/models/sbml-test-suite/cases/semantic/00950/00950-settings.txt new file mode 100644 index 0000000000..c4f100b3ba --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00950/00950-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1.0 +steps: 10 +variables: P, Q, R +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00951/00951-results.csv b/models/sbml-test-suite/cases/semantic/00951/00951-results.csv new file mode 100644 index 0000000000..53b67a0d55 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00951/00951-results.csv @@ -0,0 +1,12 @@ +time, P, Q, R +0,INF,-INF, NaN +0.1,INF,-INF, NaN +0.2,INF,-INF, NaN +0.3,INF,-INF, NaN +0.4,INF,-INF, NaN +0.5,INF,-INF, NaN +0.6,INF,-INF, NaN +0.7,INF,-INF, NaN +0.8,INF,-INF, NaN +0.9,INF,-INF, NaN +1,INF,-INF, NaN diff --git a/models/sbml-test-suite/cases/semantic/00951/00951-sbml-l1v2.xml b/models/sbml-test-suite/cases/semantic/00951/00951-sbml-l1v2.xml new file mode 100644 index 0000000000..7727c620c2 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00951/00951-sbml-l1v2.xml @@ -0,0 +1,30 @@ + + + + + +

Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00951/00951-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00951/00951-sbml-l2v4.xml new file mode 100644 index 0000000000..788069eb1c --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00951/00951-sbml-l2v4.xml @@ -0,0 +1,27 @@ + + + + + +

Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00951/00951-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00951/00951-sbml-l3v1.xml new file mode 100644 index 0000000000..ea974392a0 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00951/00951-sbml-l3v1.xml @@ -0,0 +1,27 @@ + + + + + +

Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00951/00951-settings.txt b/models/sbml-test-suite/cases/semantic/00951/00951-settings.txt new file mode 100644 index 0000000000..c4f100b3ba --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00951/00951-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1.0 +steps: 10 +variables: P, Q, R +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00952/00952-antimony.txt b/models/sbml-test-suite/cases/semantic/00952/00952-antimony.txt new file mode 100644 index 0000000000..e7453895bb --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00952/00952-antimony.txt @@ -0,0 +1,17 @@ +model case00952() + + // Assignment Rules: + S := Q + R; + + // Events: + Qinc: at (time - reset >= 0.01), priority = 1, persistent=false: Q = Q + 0.01, reset = time; + Rinc: at (time - reset >= 0.01), priority = 1, persistent=false: R = R + 0.01, reset = time; + error_check: at (abs(Q - R) >= 4): error = 1; + + // Variable initializations: + Q = 0; + R = 0; + reset = 0; + error = 0; + +end diff --git a/models/sbml-test-suite/cases/semantic/00952/00952-results.csv b/models/sbml-test-suite/cases/semantic/00952/00952-results.csv new file mode 100644 index 0000000000..ef7896ba5e --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00952/00952-results.csv @@ -0,0 +1,1003 @@ +time,S,error +0,0,0 +0.0999001,0.09,0 +0.1998002,0.19,0 +0.2997003,0.29,0 +0.3996004,0.39,0 +0.4995005,0.49,0 +0.599400599,0.59,0 +0.699300699,0.69,0 +0.799200799,0.79,0 +0.899100899,0.89,0 +0.999000999,0.99,0 +1.098901099,1.09,0 +1.198801199,1.19,0 +1.298701299,1.29,0 +1.398601399,1.39,0 +1.498501499,1.49,0 +1.598401598,1.59,0 +1.698301698,1.69,0 +1.798201798,1.79,0 +1.898101898,1.89,0 +1.998001998,1.99,0 +2.097902098,2.09,0 +2.197802198,2.19,0 +2.297702298,2.29,0 +2.397602398,2.39,0 +2.497502498,2.49,0 +2.597402597,2.59,0 +2.697302697,2.69,0 +2.797202797,2.79,0 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Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + Q + R + + + + + + + + + + + + + time + reset + + 0.01 + + + + + + + time + + + + + + + Q + 0.01 + + + + + + + + + + + + + time + reset + + 0.01 + + + + + + + time + + + + + + + R + 0.01 + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00953/00953-settings.txt b/models/sbml-test-suite/cases/semantic/00953/00953-settings.txt new file mode 100644 index 0000000000..fda585b787 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00953/00953-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 100 +steps: 1001 +variables: S +absolute: 0.01 +relative: 0.01 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00954/00954-antimony.txt b/models/sbml-test-suite/cases/semantic/00954/00954-antimony.txt new file mode 100644 index 0000000000..b1bb54fa6b --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00954/00954-antimony.txt @@ -0,0 +1,45 @@ +model case000954() + P1 = 3.7; + P2 := abs(-1); + P3 := abs(1); + P4 := acos(-1); + P5 := acos(.5); + P6 := asin(1); + P7 := asin(-.5); + P8 := atan(2.8); + P9 := atan(-7.09); + P10 := ceil(.5); + P11 := ceil(3.55); + P12 := ceil(-4.6); + P13 := cos(9.1); + P14 := cos(-0.22); + P15 := exp(0); + P16 := exp(1); + P17 := exp(.77); + P18 := floor(-4.6); + P19 := floor(9.1); + P20 := log(.2); + P21 := log(1); + P22 := log10(.2); + P23 := log10(1); + P24 := pow(1, 2); + P25 := pow(2, 2); + P26 := pow(1.4, 5.1); + P27 := sqr(4); + P28 := sqr(3.1); + P29 := sqrt(4); + P30 := sqrt(7.4); + P31 := sin(2.1); + P32 := sin(0); + P33 := sin(-5.9); + P34 := tan(0); + P35 := tan(1.11); + P36 := tan(-6); + P37 := 1 + 2; + P38 := 1 - 2; + P39 := 5/2; + P40 := 8*3; + + +end + diff --git a/models/sbml-test-suite/cases/semantic/00954/00954-results.csv b/models/sbml-test-suite/cases/semantic/00954/00954-results.csv new file mode 100644 index 0000000000..2ea04110fa --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00954/00954-results.csv @@ -0,0 +1,12 @@ +time,P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,P16,P17,P18,P19,P20,P21,P22,P23,P24,P25,P26,P27,P28,P29,P30,P31,P32,P33,P34,P35,P36,P37,P38,P39,P40 +0,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.1,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.2,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.3,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.4,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.5,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.6,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.7,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.8,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.9,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +1,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 diff --git a/models/sbml-test-suite/cases/semantic/00954/00954-sbml-l1v2.xml b/models/sbml-test-suite/cases/semantic/00954/00954-sbml-l1v2.xml new file mode 100644 index 0000000000..ddcdf33b06 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00954/00954-sbml-l1v2.xml @@ -0,0 +1,108 @@ + + + + + +

Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

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Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

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Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

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a/models/sbml-test-suite/cases/semantic/00954/00954-settings.txt b/models/sbml-test-suite/cases/semantic/00954/00954-settings.txt new file mode 100644 index 0000000000..3cfbb052a9 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00954/00954-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1.0 +steps: 10 +variables: P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,P16,P17,P18,P19,P20,P21,P22,P23,P24,P25,P26,P27,P28,P29,P30,P31,P32,P33,P34,P35,P36,P37,P38,P39,P40 +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00955/00955-antimony.txt b/models/sbml-test-suite/cases/semantic/00955/00955-antimony.txt new file mode 100644 index 0000000000..60f2938002 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00955/00955-antimony.txt @@ -0,0 +1,45 @@ +//Created by libAntimony v1.4 +model case000955() + + // Assignment Rules: + P1 := time; + P2 := abs(time); + P3 := abs(-time); + P4 := acos(time); + P5 := acos(-time); + P6 := asin(time); + P7 := asin(-time); + P8 := atan(time); + P9 := atan(-time); + P10 := ceil(time); + P11 := ceil(-time); + P13 := cos(time); + P14 := cos(-time); + P15 := exp(time); + P16 := exp(-time); + P18 := floor(time); + P19 := floor(-time); + P20 := log(time + 1); + P22 := log10(time + 1); + P24 := time^2; + P25 := 2^time; + P26 := time^time; + P29 := sqrt(time); + P31 := sin(time); + P32 := sin(-time); + P34 := tan(time); + P35 := tan(-time); + P37 := time + 2; + P38 := time - 2; + P39 := time / 2; + P40 := time * 3; + P41 := 2 + time; + P42 := 2 - time; + P43 := 2 / (time + 1); + P44 := 3 * time; + + //Other declarations: + var P1, P2, P3, P4, P5, P6, P7, P8, P9, P10, P11, P13, P14, P15, P16, P18; + var P19, P20, P22, P24, P25, P26, P29, P31, P32, P34, P35, P37, P38, P39; + var P40, P41, P42, P43, P44; +end \ No newline at end of file diff --git a/models/sbml-test-suite/cases/semantic/00955/00955-results.csv b/models/sbml-test-suite/cases/semantic/00955/00955-results.csv 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b/models/sbml-test-suite/cases/semantic/00955/00955-sbml-l2v4.xml new file mode 100644 index 0000000000..932ff54aec --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00955/00955-sbml-l2v4.xml @@ -0,0 +1,397 @@ + + + + + +

Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

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Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + time + + + + + + + time + + + + + + + + + + time + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + + + time + 1 + + + + + + + + + + 10 + + + + time + 1 + + + + + + + + + time + 2 + + + + + + + + 2 + time + + + + + + + + time + time + + + + + + + + + 2 + + time + + + + + + + + time + + + + + + + + + + time + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + time + 2 + + + + + + + + time + 2 + + + + + + + + time + 2 + + + + + + + + time + 3 + + + + + + + + 2 + time + + + + + + + + 2 + time + + + + + + + + 2 + + + time + 1 + + + + + + + + + 3 + time + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00955/00955-settings.txt b/models/sbml-test-suite/cases/semantic/00955/00955-settings.txt new file mode 100644 index 0000000000..1acc73baee --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00955/00955-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1.0 +steps: 10 +variables: P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P13,P14,P15,P16,P18,P19,P20,P22,P24,P25,P26,P29,P31,P32,P34,P35,P37,P38,P39,P40,P41,P42,P43,P44 +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00956/00956-antimony.txt b/models/sbml-test-suite/cases/semantic/00956/00956-antimony.txt new file mode 100644 index 0000000000..72ad3ad725 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00956/00956-antimony.txt @@ -0,0 +1,44 @@ +model case000954() + P1 = 3.7; + P2 = abs(-1); + P3 = abs(1); + P4 = acos(-1); + P5 = acos(.5); + P6 = asin(1); + P7 = asin(-.5); + P8 = atan(2.8); + P9 = atan(-7.09); + P10 = ceil(.5); + P11 = ceil(3.55); + P12 = ceil(-4.6); + P13 = cos(9.1); + P14 = cos(-0.22); + P15 = exp(0); + P16 = exp(1); + P17 = exp(.77); + P18 = floor(-4.6); + P19 = floor(9.1); + P20 = log(.2); + P21 = log(1); + P22 = log10(.2); + P23 = log10(1); + P24 = pow(1, 2); + P25 = pow(2, 2); + P26 = pow(1.4, 5.1); + P27 = sqr(4); + P28 = sqr(3.1); + P29 = sqrt(4); + P30 = sqrt(7.4); + P31 = sin(2.1); + P32 = sin(0); + P33 = sin(-5.9); + P34 = tan(0); + P35 = tan(1.11); + P36 = tan(-6); + P37 = 1 + 2; + P38 = 1 - 2; + P39 = 5/2; + P40 = 8*3; + +end + diff --git a/models/sbml-test-suite/cases/semantic/00956/00956-results.csv b/models/sbml-test-suite/cases/semantic/00956/00956-results.csv new file mode 100644 index 0000000000..2ea04110fa --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00956/00956-results.csv @@ -0,0 +1,12 @@ +time,P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,P16,P17,P18,P19,P20,P21,P22,P23,P24,P25,P26,P27,P28,P29,P30,P31,P32,P33,P34,P35,P36,P37,P38,P39,P40 +0,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.1,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.2,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.3,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.4,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.5,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.6,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.7,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.8,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +0.9,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 +1,3.7,1,1,3.141592654,1.047197551,1.570796327,-0.523598776,1.227772386,-1.430676873,1,4,-4,-0.947721602,0.975897449,1,2.718281828,2.159766254,-5,9,-1.609437912,0,-0.698970004,0,1,4,5.562281728,16,9.61,2,2.720294102,0.863209367,0,0.373876665,0,2.014338214,0.291006191,3,-1,2.5,24 diff --git a/models/sbml-test-suite/cases/semantic/00956/00956-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00956/00956-sbml-l2v4.xml new file mode 100644 index 0000000000..c65e01adf7 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00956/00956-sbml-l2v4.xml @@ -0,0 +1,404 @@ + + + + + +

Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 3.7 + + + + + + + -1 + + + + + + + + 1 + + + + + + + + -1 + + + + + + + + 0.5 + + + + + + + + 1 + + + + + + + + -0.5 + + + + + + + + 2.8 + + + + + + + + -7.09 + + + + + + + + 0.5 + + + + + + + + 3.55 + + + + + + + + -4.6 + + + + + + + + 9.1 + + + + + + + + -0.22 + + + + + + + + 0 + + + + + + + + 1 + + + + + + + + 0.77 + + + + + + + + -4.6 + + + + + + + + 9.1 + + + + + + + + 0.2 + + + + + + + + 1 + + + + + + + + + 10 + + 0.2 + + + + + + + + + 10 + + 1 + + + + + + + + 1 + 2 + + + + + + + + 2 + 2 + + + + + + + + 1.4 + 5.1 + + + + + + + + 4 + 2 + + + + + + + + 3.1 + 2 + + + + + + + + + 2 + + 4 + + + + + + + + + 2 + + 7.4 + + + + + + + + 2.1 + + + + + + + + 0 + + + + + + + + -5.9 + + + + + + + + 0 + + + + + + + + 1.11 + + + + + + + + -6 + + + + + + + + 1 + 2 + + + + + + + + 1 + 2 + + + + + + + + 5 + 2 + + + + + + + + 8 + 3 + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00956/00956-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00956/00956-sbml-l3v1.xml new file mode 100644 index 0000000000..445689a39d --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00956/00956-sbml-l3v1.xml @@ -0,0 +1,404 @@ + + + + + +

Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 3.7 + + + + + + + -1 + + + + + + + + 1 + + + + + + + + -1 + + + + + + + + 0.5 + + + + + + + + 1 + + + + + + + + -0.5 + + + + + + + + 2.8 + + + + + + + + -7.09 + + + + + + + + 0.5 + + + + + + + + 3.55 + + + + + + + + -4.6 + + + + + + + + 9.1 + + + + + + + + -0.22 + + + + + + + + 0 + + + + + + + + 1 + + + + + + + + 0.77 + + + + + + + + -4.6 + + + + + + + + 9.1 + + + + + + + + 0.2 + + + + + + + + 1 + + + + + + + + + 10 + + 0.2 + + + + + + + + + 10 + + 1 + + + + + + + + 1 + 2 + + + + + + + + 2 + 2 + + + + + + + + 1.4 + 5.1 + + + + + + + + 4 + 2 + + + + + + + + 3.1 + 2 + + + + + + + + + 2 + + 4 + + + + + + + + + 2 + + 7.4 + + + + + + + + 2.1 + + + + + + + + 0 + + + + + + + + -5.9 + + + + + + + + 0 + + + + + + + + 1.11 + + + + + + + + -6 + + + + + + + + 1 + 2 + + + + + + + + 1 + 2 + + + + + + + + 5 + 2 + + + + + + + + 8 + 3 + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00956/00956-settings.txt b/models/sbml-test-suite/cases/semantic/00956/00956-settings.txt new file mode 100644 index 0000000000..7eaff995ee --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00956/00956-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1.0 +steps: 10 +variables: P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,P16,P17,P18,P19,P20,P21,P22,P23,P24,P25,P26,P27,P28,P29,P30,P31,P32,P33,P34,P35,P36,P37,P38,P39,P40 +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00957/00957-antimony.txt b/models/sbml-test-suite/cases/semantic/00957/00957-antimony.txt new file mode 100644 index 0000000000..6480862a23 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00957/00957-antimony.txt @@ -0,0 +1,37 @@ +//Created by libAntimony v1.4 +model case000957() + + // Assignment Rules: + P1 := pi; + P3 := piecewise(2, gt(1, 0.5), 3); + P4 := piecewise(2, geq(1, 0.5), 3); + P5 := piecewise(2, lt(1, 0.5), 3); + P6 := piecewise(2, leq(1, 0.5), 3); + P7 := piecewise(2, eq(P1, pi), 3); + P8 := piecewise(2, neq(P1, pi), 3); + P9 := factorial(4); + P10 := piecewise(2, and(true, false), 3); + P11 := piecewise(2, or(true, false), 3); + P12 := piecewise(2, xor(true, false), 3); + P13 := piecewise(2, not(false), 3); + P14 := sec(0.5); + P15 := csc(4.5); + P16 := cot(0.2); + P17 := sinh(0.3); + P18 := cosh(1.7); + P19 := arcsec(2.3); + P20 := arccsc(1.1); + P21 := arccot(-0.1); + P22 := arcsinh(99); + P23 := arccosh(1.34); + P24 := arctanh(-0.7); + P25 := arcsech(.42); + P26 := arccsch(0.01); + P27 := arccoth(8.2); + P28 := exponentiale; + P29 := exp(exponentiale); + + //Other declarations: + var P1, P3, P4, P5, P6, P7, P8, P9, P10, P11, P12, P13, P14, P15, P16, P17; + var P18, P19, P20, P21, P22, P23, P24, P25, P26, P27, P28, P29; +end \ No newline at end of file diff --git a/models/sbml-test-suite/cases/semantic/00957/00957-results.csv b/models/sbml-test-suite/cases/semantic/00957/00957-results.csv new file mode 100644 index 0000000000..93f45452b1 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00957/00957-results.csv @@ -0,0 +1,12 @@ +time,P1,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,P16,P17,P18,P19,P20,P21,P22,P23,P24,P25,P26,P27,P28,P29 +0,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.1,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.2,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.3,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.4,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.5,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.6,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.7,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.8,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.9,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +1,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 diff --git a/models/sbml-test-suite/cases/semantic/00957/00957-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00957/00957-sbml-l2v4.xml new file mode 100644 index 0000000000..75d2df20b0 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00957/00957-sbml-l2v4.xml @@ -0,0 +1,361 @@ + + + + + +

Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

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Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2 + + + 1 + 0.5 + + + + 3 + + + + + + + + + 2 + + + 1 + 0.5 + + + + 3 + + + + + + + + + 2 + + + 1 + 0.5 + + + + 3 + + + + + + + + + 2 + + + 1 + 0.5 + + + + 3 + + + + + + + + + 2 + + + P1 + + + + + 3 + + + + + + + + + 2 + + + P1 + + + + + 3 + + + + + + + + + 4 + + + + + + + + 2 + + + + + + + + 3 + + + + + + + + + 2 + + + + + + + + 3 + + + + + + + + + 2 + + + + + + + + 3 + + + + + + + + + 2 + + + + + + + 3 + + + + + + + + + 0.5 + + + + + + + + 4.5 + + + + + + + + 0.2 + + + + + + + + 0.3 + + + + + + + + 1.7 + + + + + + + + 2.3 + + + + + + + + 1.1 + + + + + + + + -0.1 + + + + + + + + 99 + + + + + + + + 1.34 + + + + + + + + -0.7 + + + + + + + + 0.42 + + + + + + + + 0.01 + + + + + + + + 8.2 + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00957/00957-settings.txt b/models/sbml-test-suite/cases/semantic/00957/00957-settings.txt new file mode 100644 index 0000000000..64aa4e2041 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00957/00957-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1.0 +steps: 10 +variables: P1,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,P16,P17,P18,P19,P20,P21,P22,P23,P24,P25,P26,P27,P28,P29 +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00958/00958-antimony.txt b/models/sbml-test-suite/cases/semantic/00958/00958-antimony.txt new file mode 100644 index 0000000000..564743388b --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00958/00958-antimony.txt @@ -0,0 +1,31 @@ +model case000958() + P1 = pi; + P3 = piecewise(2, gt(1, 0.5), 3); + P4 = piecewise(2, geq(1, 0.5), 3); + P5 = piecewise(2, lt(1, 0.5), 3); + P6 = piecewise(2, leq(1, 0.5), 3); + P7 = piecewise(2, eq(P1, pi), 3); + P8 = piecewise(2, neq(P1, pi), 3); + P9 = factorial(4); + P10 = piecewise(2, and(true, false), 3); + P11 = piecewise(2, or(true, false), 3); + P12 = piecewise(2, xor(true, false), 3); + P13 = piecewise(2, not(false), 3); + P14 = sec(0.5); + P15 = csc(4.5); + P16 = cot(0.2); + P17 = sinh(0.3); + P18 = cosh(1.7); + P19 = arcsec(2.3); + P20 = arccsc(1.1); + P21 = arccot(-0.1); + P22 = arcsinh(99); + P23 = arccosh(1.34); + P24 = arctanh(-0.7); + P25 = arcsech(.42); + P26 = arccsch(0.01); + P27 = arccoth(8.2); + P28 = exponentiale; + P29 = exp(exponentiale); + +end \ No newline at end of file diff --git a/models/sbml-test-suite/cases/semantic/00958/00958-results.csv b/models/sbml-test-suite/cases/semantic/00958/00958-results.csv new file mode 100644 index 0000000000..93f45452b1 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00958/00958-results.csv @@ -0,0 +1,12 @@ +time,P1,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,P16,P17,P18,P19,P20,P21,P22,P23,P24,P25,P26,P27,P28,P29 +0,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.1,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.2,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.3,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.4,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.5,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.6,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.7,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.8,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +0.9,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 +1,3.141592654,2,2,3,3,2,3,24,3,2,2,2,1.139493927,-1.022986384,4.933154876,0.304520293,2.828315458,1.120999466,1.141096661,-1.471127674,5.288292537,0.802881971,-0.867300528,1.513306688,5.298342366,0.122561229,2.718281828,15.15426224 diff --git a/models/sbml-test-suite/cases/semantic/00958/00958-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00958/00958-sbml-l2v4.xml new file mode 100644 index 0000000000..30a15ff690 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00958/00958-sbml-l2v4.xml @@ -0,0 +1,361 @@ + + + + + +

Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2 + + + 1 + 0.5 + + + + 3 + + + + + + + + + 2 + + + 1 + 0.5 + + + + 3 + + + + + + + + + 2 + + + 1 + 0.5 + + + + 3 + + + + + + + + + 2 + + + 1 + 0.5 + + + + 3 + + + + + + + + + 2 + + + P1 + + + + + 3 + + + + + + + + + 2 + + + P1 + + + + + 3 + + + + + + + + + 4 + + + + + + + + 2 + + + + + + + + 3 + + + + + + + + + 2 + + + + + + + + 3 + + + + + + + + + 2 + + + + + + + + 3 + + + + + + + + + 2 + + + + + + + 3 + + + + + + + + + 0.5 + + + + + + + + 4.5 + + + + + + + + 0.2 + + + + + + + + 0.3 + + + + + + + + 1.7 + + + + + + + + 2.3 + + + + + + + + 1.1 + + + + + + + + -0.1 + + + + + + + + 99 + + + + + + + + 1.34 + + + + + + + + -0.7 + + + + + + + + 0.42 + + + + + + + + 0.01 + + + + + + + + 8.2 + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00958/00958-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00958/00958-sbml-l3v1.xml new file mode 100644 index 0000000000..5f0a8807d0 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00958/00958-sbml-l3v1.xml @@ -0,0 +1,361 @@ + + + + + +

Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2 + + + 1 + 0.5 + + + + 3 + + + + + + + + + 2 + + + 1 + 0.5 + + + + 3 + + + + + + + + + 2 + + + 1 + 0.5 + + + + 3 + + + + + + + + + 2 + + + 1 + 0.5 + + + + 3 + + + + + + + + + 2 + + + P1 + + + + + 3 + + + + + + + + + 2 + + + P1 + + + + + 3 + + + + + + + + + 4 + + + + + + + + 2 + + + + + + + + 3 + + + + + + + + + 2 + + + + + + + + 3 + + + + + + + + + 2 + + + + + + + + 3 + + + + + + + + + 2 + + + + + + + 3 + + + + + + + + + 0.5 + + + + + + + + 4.5 + + + + + + + + 0.2 + + + + + + + + 0.3 + + + + + + + + 1.7 + + + + + + + + 2.3 + + + + + + + + 1.1 + + + + + + + + -0.1 + + + + + + + + 99 + + + + + + + + 1.34 + + + + + + + + -0.7 + + + + + + + + 0.42 + + + + + + + + 0.01 + + + + + + + + 8.2 + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00958/00958-settings.txt b/models/sbml-test-suite/cases/semantic/00958/00958-settings.txt new file mode 100644 index 0000000000..64aa4e2041 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00958/00958-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1.0 +steps: 10 +variables: P1,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,P16,P17,P18,P19,P20,P21,P22,P23,P24,P25,P26,P27,P28,P29 +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00959/00959-antimony.txt b/models/sbml-test-suite/cases/semantic/00959/00959-antimony.txt new file mode 100644 index 0000000000..8ed3a77e18 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00959/00959-antimony.txt @@ -0,0 +1,30 @@ +model case000959() + + // Assignment Rules: + P1 := sec(time); + P2 := sec(-time); + P3 := csc(time + 0.001); + P4 := csc(-time - 0.001); + P5 := cot(time + 0.001); + P6 := cot(-time - 0.001); + P7 := sinh(time); + P8 := sinh(-time); + P9 := cosh(time); + P10 := cosh(-time); + P11 := arcsec(time + 1); + P12 := arcsec(-time - 1); + P13 := arccsc(time + 1); + P14 := arccsc(-time - 1); + P15 := arccot(time); + P16 := arccot(-time); + P17 := arcsinh(time); + P18 := arcsinh(-time); + P19 := arccosh(time + 1); + P20 := piecewise(arctanh(time), (time < 1), 10); + P21 := piecewise(arctanh(-time), (time < 1), -10); + P22 := piecewise(0,((time<=0) || (time>=1)),arcsech(time + 0.001)); + P23 := arccsch(time + 1); + P24 := arccsch(-time - 1); + P25 := arccoth(time + 1.001); + P26 := arccoth(-time - 1.001); +end diff --git a/models/sbml-test-suite/cases/semantic/00959/00959-results.csv b/models/sbml-test-suite/cases/semantic/00959/00959-results.csv new file mode 100644 index 0000000000..441a765fd5 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00959/00959-results.csv @@ -0,0 +1,12 @@ +time,P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,P16,P17,P18,P19,P20,P21,P22,P23,P24,P25,P26 +0,1,1,1000.000167,-1000.000167,999.9996667,-999.9996667,0,0,1,1,0,3.141592654,1.570796327,-1.570796327,1.570796327,-1.570796327,0,0,0,0,0,0,0.881373587,-0.881373587,3.800701167,-3.800701167 +0.1,1.005020918,1.005020918,9.917843488,-9.917843488,9.867300514,-9.867300514,0.10016675,-0.10016675,1.005004168,1.005004168,0.429699666,2.711892987,1.141096661,-1.141096661,1.471127674,-1.471127674,0.099834079,-0.099834079,0.443568254,0.100335348,-0.100335348,2.993222846,0.8156089,-0.8156089,1.517524092,-1.517524092 +0.2,1.020338845,1.020338845,5.008782954,-5.008782954,4.907943223,-4.907943223,0.201336003,-0.201336003,1.020066756,1.020066756,0.585685543,2.55590711,0.985110783,-0.985110783,1.373400767,-1.373400767,0.19869011,-0.19869011,0.622362504,0.202732554,-0.202732554,2.29243167,0.758486137,-0.758486137,1.196681087,-1.196681087 +0.3,1.046751602,1.046751602,3.372961184,-3.372961184,3.221314506,-3.221314506,0.304520293,-0.304520293,1.045338514,1.045338514,0.693159908,2.448432746,0.877636419,-0.877636419,1.279339532,-1.279339532,0.295673048,-0.295673048,0.756432911,0.309519604,-0.309519604,1.873820243,0.708460844,-0.708460844,1.016994413,-1.016994413 +0.4,1.085704428,1.085704428,2.561874335,-2.561874335,2.358643701,-2.358643701,0.410752326,-0.410752326,1.081072372,1.081072372,0.775193373,2.36639928,0.795602953,-0.795602953,1.19028995,-1.19028995,0.39003532,-0.39003532,0.867014726,0.42364893,-0.42364893,1.566799237,0.664330605,-0.664330605,0.894839584,-0.894839584 +0.5,1.139493927,1.139493927,2.082019573,-2.082019573,1.826144984,-1.826144984,0.521095305,-0.521095305,1.127625965,1.127625965,0.841068671,2.300523983,0.729727656,-0.729727656,1.107148718,-1.107148718,0.481211825,-0.481211825,0.96242365,0.549306144,-0.549306144,1.316957897,0.625145117,-0.625145117,0.803919915,-0.803919915 +0.6,1.211628315,1.211628315,1.768448148,-1.768448148,1.458563969,-1.458563969,0.636653582,-0.636653582,1.185465218,1.185465218,0.895664794,2.24592786,0.675131533,-0.675131533,1.030376827,-1.030376827,0.568824899,-0.568824899,1.046967915,0.693147181,-0.693147181,1.098612289,0.590143686,-0.590143686,0.732528165,-0.732528165 +0.7,1.30745926,1.30745926,1.550430367,-1.550430367,1.184835145,-1.184835145,0.758583702,-0.758583702,1.255169006,1.255169006,0.941921401,2.199671252,0.628874925,-0.628874925,0.960070362,-0.960070362,0.652666566,-0.652666566,1.123230983,0.867300528,-0.867300528,0.8955881,0.558710603,-0.558710603,0.674434733,-0.674434733 +0.8,1.4353242,1.4353242,1.392655948,-1.392655948,0.969273228,-0.969273228,0.888105982,-0.888105982,1.337434946,1.337434946,0.981765357,2.159827297,0.58903097,-0.58903097,0.896055385,-0.896055385,0.732668256,-0.732668256,1.192910731,1.098612289,-1.098612289,0.693147181,0.530342599,-0.530342599,0.625935414,-0.625935414 +0.9,1.60872581,1.60872581,1.275594602,-1.275594602,0.791922716,-0.791922716,1.026516726,-1.026516726,1.433086385,1.433086385,1.016534492,2.125058161,0.554261834,-0.554261834,0.837981225,-0.837981225,0.808866936,-0.808866936,1.257195827,1.47221949,-1.47221949,0.467145308,0.504624666,-0.504624666,0.584652763,-0.584652763 +1,1.850815718,1.850815718,1.187633129,-1.187633129,0.640681239,-0.640681239,1.175201194,-1.175201194,1.543080635,1.543080635,1.047197551,2.094395102,0.523598776,-0.523598776,0.785398163,-0.785398163,0.881373587,-0.881373587,1.316957897,10,-10,0,0.481211825,-0.481211825,0.548973033,-0.548973033 diff --git a/models/sbml-test-suite/cases/semantic/00959/00959-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00959/00959-sbml-l2v4.xml new file mode 100644 index 0000000000..5d6d43348b --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00959/00959-sbml-l2v4.xml @@ -0,0 +1,392 @@ + + + + + +

Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + + + time + 0.001 + + + + + + + + + + + + + time + + 0.001 + + + + + + + + + + + time + 0.001 + + + + + + + + + + + + + time + + 0.001 + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + + + time + 1 + + + + + + + + + + + + + time + + 1 + + + + + + + + + + + time + 1 + + + + + + + + + + + + + time + + 1 + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + + + time + 1 + + + + + + + + + + + time + + + + time + 1 + + + + 10 + + + + + + + + + + + + + time + + + + + time + 1 + + + + -10 + + + + + + + + + 0 + + + + + time + 0 + + + + time + 1 + + + + + + + time + + + + + + + + + + + + time + 1 + + + + + + + + + + + + + time + + 1 + + + + + + + + + + + time + 1.001 + + + + + + + + + + + + + time + + 1.001 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00959/00959-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00959/00959-sbml-l3v1.xml new file mode 100644 index 0000000000..2e56e36c82 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00959/00959-sbml-l3v1.xml @@ -0,0 +1,392 @@ + + + + + +

Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + + + time + 0.001 + + + + + + + + + + + + + time + + 0.001 + + + + + + + + + + + time + 0.001 + + + + + + + + + + + + + time + + 0.001 + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + + + time + 1 + + + + + + + + + + + + + time + + 1 + + + + + + + + + + + time + 1 + + + + + + + + + + + + + time + + 1 + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + time + + + + + + + + + + time + + + + + + + + + + + time + 1 + + + + + + + + + + + time + + + + time + 1 + + + + 10 + + + + + + + + + + + + + time + + + + + time + 1 + + + + -10 + + + + + + + + + 0 + + + + + time + 0 + + + + time + 1 + + + + + + + time + + + + + + + + + + + + time + 1 + + + + + + + + + + + + + time + + 1 + + + + + + + + + + + time + 1.001 + + + + + + + + + + + + + time + + 1.001 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00959/00959-settings.txt b/models/sbml-test-suite/cases/semantic/00959/00959-settings.txt new file mode 100644 index 0000000000..dbdfb6446b --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00959/00959-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1.0 +steps: 10 +variables: P1,P2, P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,P16,P17,P18,P19,P20,P21,P22,P23,P24,P25,P26 +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00960/00960-results.csv b/models/sbml-test-suite/cases/semantic/00960/00960-results.csv new file mode 100644 index 0000000000..acc3d208cc --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00960/00960-results.csv @@ -0,0 +1,12 @@ +time,P1,P2,P3,P4,P5 +0,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.1,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.2,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.3,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.4,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.5,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.6,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.7,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.8,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.9,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +1,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 diff --git a/models/sbml-test-suite/cases/semantic/00960/00960-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00960/00960-sbml-l3v1.xml new file mode 100644 index 0000000000..6bf5a25fd1 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00960/00960-sbml-l3v1.xml @@ -0,0 +1,60 @@ + + + + + +

Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + + + + + avogadro + + + + + time + + + + + delay + + + + + + + + + + + + avogadro + 6.0221 23 + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00960/00960-settings.txt b/models/sbml-test-suite/cases/semantic/00960/00960-settings.txt new file mode 100644 index 0000000000..194e0e0fb4 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00960/00960-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1.0 +steps: 10 +variables: P1,P2,P3,P4,P5 +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00961/00961-results.csv b/models/sbml-test-suite/cases/semantic/00961/00961-results.csv new file mode 100644 index 0000000000..acc3d208cc --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00961/00961-results.csv @@ -0,0 +1,12 @@ +time,P1,P2,P3,P4,P5 +0,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.1,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.2,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.3,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.4,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.5,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.6,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.7,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.8,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +0.9,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 +1,6.02214179E+23,6.02214179E+23,6.02214179E+23,6.02214179E+23,4.179E+18 diff --git a/models/sbml-test-suite/cases/semantic/00961/00961-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00961/00961-sbml-l3v1.xml new file mode 100644 index 0000000000..2f82abd348 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00961/00961-sbml-l3v1.xml @@ -0,0 +1,43 @@ + + + + + + + + + + + + + + avogadro + + + + + time + + + + + delay + + + + + + + + + + + + avogadro + 6.0221 23 + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00961/00961-settings.txt b/models/sbml-test-suite/cases/semantic/00961/00961-settings.txt new file mode 100644 index 0000000000..194e0e0fb4 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00961/00961-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1.0 +steps: 10 +variables: P1,P2,P3,P4,P5 +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00962/00962-antimony.txt b/models/sbml-test-suite/cases/semantic/00962/00962-antimony.txt new file mode 100644 index 0000000000..d52585a527 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00962/00962-antimony.txt @@ -0,0 +1,21 @@ +//Created by libAntimony v1.4 +model case00962() + + // Assignment Rules: + S := Q + R; + + // Events: + Qinc: at time - reset >= 0.01, priority = 1, persistent=false: Q = Q + 0.01, reset = time; + Rinc: at time - reset >= 0.01, priority = 1, persistent=false: R = R + 0.01, reset = time; + maxcheck: at(abs(Q-R)>maxdiff): maxdiff = abs(Q-R); + error_check: at (time>=99) && (maxdiff < .2) : error = 1; + + // Variable initializations: + reset = 0; + Q = 0; + R = 0; + maxdiff = 0; + error = 0; + +end + diff --git a/models/sbml-test-suite/cases/semantic/00962/00962-results.csv b/models/sbml-test-suite/cases/semantic/00962/00962-results.csv new file mode 100644 index 0000000000..ef7896ba5e --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00962/00962-results.csv @@ -0,0 +1,1003 @@ +time,S,error +0,0,0 +0.0999001,0.09,0 +0.1998002,0.19,0 +0.2997003,0.29,0 +0.3996004,0.39,0 +0.4995005,0.49,0 +0.599400599,0.59,0 +0.699300699,0.69,0 +0.799200799,0.79,0 +0.899100899,0.89,0 +0.999000999,0.99,0 +1.098901099,1.09,0 +1.198801199,1.19,0 +1.298701299,1.29,0 +1.398601399,1.39,0 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Originally created by libAntimony v1.4 (using libSBML 5.0.0-a1)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + + + time + reset + + 0.01 + + + + + + + time + + + + + + + Q + 0.01 + + + + + + + + + -1 + + + + + + + + + time + reset + + 0.01 + + + + + + + time + + + + + + + R + 0.01 + + + + + + + + + -1 + + + + + + + + + time + reset2 + + 0.01 + + + + + + + time + + + + + + + Q2 + 0.01 + + + + + + + + + 1 + + + + + + + + + time + reset2 + + 0.01 + + + + + + + time + + + + + + + R2 + 0.01 + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00963/00963-settings.txt b/models/sbml-test-suite/cases/semantic/00963/00963-settings.txt new file mode 100644 index 0000000000..b930cdf197 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00963/00963-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 10.001 +steps: 1001 +variables: Q, R, Q2, R2 +absolute: 0.01 +relative: 0.01 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00964/00964-antimony.txt b/models/sbml-test-suite/cases/semantic/00964/00964-antimony.txt new file mode 100644 index 0000000000..c94d5412fe --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00964/00964-antimony.txt @@ -0,0 +1,20 @@ +model case00963() + + // Assignment Rules: + S := Q + R + T; + + // Events: + Qinc: at (time - reset >= 0.01), priority = 1, persistent=false: Q = Q + 0.01, reset = time; + Rinc: at (time - reset >= 0.01), priority = 1, persistent=false: R = R + 0.01, reset = time; + Tinc: at (time - reset >= 0.01), priority = 1, persistent=false: T = T + 0.01, reset = time; + error_check: at or((abs(Q - R) >= tolerance), (abs(Q - T) >= tolerance), (abs(T - R) >= tolerance)): error = 1; + + // Variable initializations: + reset = 0; + Q = 0; + R = 0; + T = 0; + tolerance = 5; + error = 0; + +end diff --git a/models/sbml-test-suite/cases/semantic/00964/00964-results.csv b/models/sbml-test-suite/cases/semantic/00964/00964-results.csv new file mode 100644 index 0000000000..ef7896ba5e --- 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+99.7002997,99.7,0 +99.8001998,99.8,0 +99.9000999,99.9,0 +100,99.99,0 diff --git a/models/sbml-test-suite/cases/semantic/00964/00964-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00964/00964-sbml-l3v1.xml new file mode 100644 index 0000000000..31b29d8edd --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00964/00964-sbml-l3v1.xml @@ -0,0 +1,189 @@ + + + + + + + + + + + + + + + + + + + Q + R + T + + + + + + + + + + + + + time + reset + + 0.01 + + + + + + 1 + + + + + + time + + + + + + + Q + 0.01 + + + + + + + + + + + + + time + reset + + 0.01 + + + + + + 1 + + + + + + time + + + + + + + R + 0.01 + + + + + + + + + + + + + time + reset + + 0.01 + + + + + + 1 + + + + + + time + + + + + + + T + 0.01 + + + + + + + + + + + + + + + + + Q + R + + + tolerance + + + + + + + + Q + T + + + tolerance + + + + + + + + T + R + + + tolerance + + + + + + + + 1 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00964/00964-settings.txt b/models/sbml-test-suite/cases/semantic/00964/00964-settings.txt new file mode 100644 index 0000000000..e89905b0d7 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00964/00964-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 100 +steps: 1001 +variables: S, error +absolute: 0.03 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00965/00965-antimony.txt b/models/sbml-test-suite/cases/semantic/00965/00965-antimony.txt new file mode 100644 index 0000000000..4a2c35c007 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00965/00965-antimony.txt @@ -0,0 +1,23 @@ +model case00965() + + // Assignment Rules: + S := Q + R; + + // Events: + Qinc: at (time - reset >= 0.01), priority = 10, persistent=false: Q = Q + 0.01, Qrun = Qrun + 1, Rrun = 0, reset = time; + Rinc: at (time - reset >= 0.01), priority = 10, persistent=false: R = R + 0.01, Rrun = Rrun + 1, Qrun = 0, reset = time; + maxrun_check1: at (Qrun > maxrun), priority = 9: maxrun = Qrun; + maxrun_check2: at (Rrun > maxrun), priority = 8: maxrun = Rrun; + error_check: at (maxrun > 300), priority = 7: error = 1; + + // Variable initializations: + reset = 0; + Q = 0; + R = 0; + Qrun = 0; + Rrun = 0; + maxrun = 0; + error = 0; + +end + diff --git a/models/sbml-test-suite/cases/semantic/00965/00965-results.csv b/models/sbml-test-suite/cases/semantic/00965/00965-results.csv new file mode 100644 index 0000000000..ef7896ba5e --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00965/00965-results.csv @@ -0,0 +1,1003 @@ +time,S,error +0,0,0 +0.0999001,0.09,0 +0.1998002,0.19,0 +0.2997003,0.29,0 +0.3996004,0.39,0 +0.4995005,0.49,0 +0.599400599,0.59,0 +0.699300699,0.69,0 +0.799200799,0.79,0 +0.899100899,0.89,0 +0.999000999,0.99,0 +1.098901099,1.09,0 +1.198801199,1.19,0 +1.298701299,1.29,0 +1.398601399,1.39,0 +1.498501499,1.49,0 +1.598401598,1.59,0 +1.698301698,1.69,0 +1.798201798,1.79,0 +1.898101898,1.89,0 +1.998001998,1.99,0 +2.097902098,2.09,0 +2.197802198,2.19,0 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+ + + + + + + + + + + + + time + reset + + 0.01 + + + + + + 10 + + + + + + time + + + + + 0 + + + + + + + Rrun + 1 + + + + + + + + R + 0.01 + + + + + + + + + + + Qrun + maxrun + + + + + + 9 + + + + + + Qrun + + + + + + + + + + Rrun + maxrun + + + + + + 8 + + + + + + Rrun + + + + + + + + + + maxrun + 300 + + + + + + 7 + + + + + + 1 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00965/00965-settings.txt b/models/sbml-test-suite/cases/semantic/00965/00965-settings.txt new file mode 100644 index 0000000000..e89905b0d7 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00965/00965-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 100 +steps: 1001 +variables: S, error +absolute: 0.03 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00966/00966-antimony.txt b/models/sbml-test-suite/cases/semantic/00966/00966-antimony.txt new file mode 100644 index 0000000000..8a152129d4 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00966/00966-antimony.txt @@ -0,0 +1,81 @@ +function calculateerror(x0, x1, x2, x3, x4, x5, x6, x7, x8, x9, x10, x11, x12, x13, x14, x15, x16) + (x0-.0952)^2/.0952 + \ + (x1-1.523)^2/1.523 + \ + (x2-11.428)^2/11.428 + \ + (x3-53.32)^2/53.32 + \ + (x4-173.29)^2/173.29 + \ + (x5-415.898)^2/415.898 + \ + (x6-762.48)^2/762.48 + \ + (x7-1089.26)^2/1089.26 + \ + (x8-1225.415)^2/1225.415 + \ + (x9-1089.26)^2/1089.26 + \ + (x10-762.48)^2/762.48 + \ + (x11-415.898)^2/415.898 + \ + (x12-173.29)^2/173.29 + \ + (x13-53.32)^2/53.32 + \ + (x14-11.428)^2/11.428 + \ + (x15-1.523)^2/1.523 + \ + (x16-.0952)^2/.0952 +end + +model case00966() + + // Assignment Rules: + S := Q + R; + + // Events: + Rinc: at (time - reset >= 0.01), priority = 10, persistent=false: R = R + 0.01, chicount = chicount+1, reset = time; + Qinc: at (time - reset >= 0.01), priority = 10, persistent=false: Q = Q + 0.01, chicount = chicount+1, chitest = chitest+1, reset = time; + + repeat: at floor(chicount/16) >= 1, priority = 5: chicount = 0, assemble = 1.5; + at ((assemble >= 1) && (chitest==0)), priority = 3: chi0 = chi0+1; + at ((assemble >= 1) && (chitest==1)), priority = 3: chi1 = chi1+1; + at ((assemble >= 1) && (chitest==2)), priority = 3: chi2 = chi2+1; + at ((assemble >= 1) && (chitest==3)), priority = 3: chi3 = chi3+1; + at ((assemble >= 1) && (chitest==4)), priority = 3: chi4 = chi4+1; + at ((assemble >= 1) && (chitest==5)), priority = 3: chi5 = chi5+1; + at ((assemble >= 1) && (chitest==6)), priority = 3: chi6 = chi6+1; + at ((assemble >= 1) && (chitest==7)), priority = 3: chi7 = chi7+1; + at ((assemble >= 1) && (chitest==8)), priority = 3: chi8 = chi8+1; + at ((assemble >= 1) && (chitest==9)), priority = 3: chi9 = chi9+1; + at ((assemble >= 1) && (chitest==10)), priority = 3: chi10 = chi10+1; + at ((assemble >= 1) && (chitest==11)), priority = 3: chi11 = chi11+1; + at ((assemble >= 1) && (chitest==12)), priority = 3: chi12 = chi12+1; + at ((assemble >= 1) && (chitest==13)), priority = 3: chi13 = chi13+1; + at ((assemble >= 1) && (chitest==14)), priority = 3: chi14 = chi14+1; + at ((assemble >= 1) && (chitest==15)), priority = 3: chi15 = chi15+1; + at ((assemble >= 1) && (chitest==16)), priority = 3: chi16 = chi16+1; + at (assemble >= 1), priority = 1: assemble = 0, chitest=0, tests = tests+1; + + at ((tests >= 6240) && (finalchi==0)), priority = 0: finalchi = calculateerror(chi0, chi1, chi2, chi3, chi4, chi5, chi6, chi7, chi8, chi9, chi10, chi11, chi12, chi13, chi14, chi15, chi16) + error_check: at (finalchi > 50), priority = -1: error = 1; + + // Variable initializations: + chicount = 0; + chitest = 0; + assemble = 0; + reset = 0; + tests = 0; + Q = 0; + R = 0; + chi0 = 0; + chi1 = 0; + chi2 = 0; + chi3 = 0; + chi4 = 0; + chi5 = 0; + chi6 = 0; + chi7 = 0; + chi8 = 0; + chi9 = 0; + chi10 = 0; + chi11 = 0; + chi12 = 0; + chi13 = 0; + chi14 = 0; + chi15 = 0; + chi16 = 0; + error = 0; + +end + diff --git 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a/models/sbml-test-suite/cases/semantic/00966/00966-settings.txt b/models/sbml-test-suite/cases/semantic/00966/00966-settings.txt new file mode 100644 index 0000000000..db5688b23c --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00966/00966-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1000 +steps: 1000 +variables: S, error +absolute: 0.01 +relative: 0.01 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00966/00966-worksheet.xlsx b/models/sbml-test-suite/cases/semantic/00966/00966-worksheet.xlsx new file mode 100644 index 0000000000..66bb216ef0 Binary files /dev/null and b/models/sbml-test-suite/cases/semantic/00966/00966-worksheet.xlsx differ diff --git a/models/sbml-test-suite/cases/semantic/00967/00967-antimony.txt b/models/sbml-test-suite/cases/semantic/00967/00967-antimony.txt new file mode 100644 index 0000000000..5e73a7ac09 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00967/00967-antimony.txt @@ -0,0 +1,12 @@ +model case00967() + + // Events: + Qinc: at (time - reset >= 0.01), priority = R, persistent=false: Q = Q + 0.01, reset = time; + Rinc: at (time - reset >= 0.01), priority = 5.001, persistent=false: R = R + 0.01, reset = time; + + // Variable initializations: + Q = 0; + R = 0; + reset = 0; + +end diff --git a/models/sbml-test-suite/cases/semantic/00967/00967-results.csv b/models/sbml-test-suite/cases/semantic/00967/00967-results.csv new file mode 100644 index 0000000000..d6fdff8c3b --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00967/00967-results.csv @@ -0,0 +1,103 @@ +time,Q,R +0,0,0 +0.099009901,0,0.09 +0.198019802,0,0.19 +0.297029703,0,0.29 +0.396039604,0,0.39 +0.495049505,0,0.49 +0.594059406,0,0.59 +0.693069307,0,0.69 +0.792079208,0,0.79 +0.891089109,0,0.89 +0.99009901,0,0.99 +1.089108911,0,1.08 +1.188118812,0,1.18 +1.287128713,0,1.28 +1.386138614,0,1.38 +1.485148515,0,1.48 +1.584158416,0,1.58 +1.683168317,0,1.68 +1.782178218,0,1.78 +1.881188119,0,1.88 +1.98019802,0,1.98 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+ + + + + + + + + + + + + time + reset + + 0.01 + + + + + + 5.001 + + + + + + time + + + + + + + R + 0.01 + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00967/00967-settings.txt b/models/sbml-test-suite/cases/semantic/00967/00967-settings.txt new file mode 100644 index 0000000000..aff564c74e --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00967/00967-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 10 +steps: 101 +variables: Q, R +absolute: 0.01 +relative: 0.01 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00968/00968-results.csv b/models/sbml-test-suite/cases/semantic/00968/00968-results.csv new file mode 100644 index 0000000000..6212877eaa --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00968/00968-results.csv @@ -0,0 +1,102 @@ +time,X +0,0 +0.1,0.3 +0.2,0.6 +0.3,0.9 +0.4,1.2 +0.5,1.5 +0.6,1.8 +0.7,2.1 +0.8,2.4 +0.9,2.7 +1,3 +1.1,3.3 +1.2,3.6 +1.3,3.9 +1.4,4.2 +1.5,4.5 +1.6,4.8 +1.7,5.1 +1.8,5.4 +1.9,5.7 +2,6 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b/models/sbml-test-suite/cases/semantic/00968/00968-sbml-l2v4.xml @@ -0,0 +1,32 @@ + + + + + + + + + + + + + + + + + + + 3 + + + + + + + k1 + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00968/00968-settings.txt b/models/sbml-test-suite/cases/semantic/00968/00968-settings.txt new file mode 100644 index 0000000000..2279f9d36a --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00968/00968-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 10 +steps: 100 +variables: X +absolute: 0.0001 +relative: 0.0001 +amount: X +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00969/00969-results.csv b/models/sbml-test-suite/cases/semantic/00969/00969-results.csv new file mode 100644 index 0000000000..6212877eaa --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00969/00969-results.csv @@ -0,0 +1,102 @@ +time,X +0,0 +0.1,0.3 +0.2,0.6 +0.3,0.9 +0.4,1.2 +0.5,1.5 +0.6,1.8 +0.7,2.1 +0.8,2.4 +0.9,2.7 +1,3 +1.1,3.3 +1.2,3.6 +1.3,3.9 +1.4,4.2 +1.5,4.5 +1.6,4.8 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b/models/sbml-test-suite/cases/semantic/00969/00969-sbml-l3v1.xml @@ -0,0 +1,33 @@ + + + + + + + + + + + + + + + + 3 + + + + + + + + + + + k1 + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00969/00969-settings.txt b/models/sbml-test-suite/cases/semantic/00969/00969-settings.txt new file mode 100644 index 0000000000..2279f9d36a --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00969/00969-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 10 +steps: 100 +variables: X +absolute: 0.0001 +relative: 0.0001 +amount: X +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00970/00970-results.csv b/models/sbml-test-suite/cases/semantic/00970/00970-results.csv new file mode 100644 index 0000000000..6212877eaa --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00970/00970-results.csv @@ -0,0 +1,102 @@ +time,X +0,0 +0.1,0.3 +0.2,0.6 +0.3,0.9 +0.4,1.2 +0.5,1.5 +0.6,1.8 +0.7,2.1 +0.8,2.4 +0.9,2.7 +1,3 +1.1,3.3 +1.2,3.6 +1.3,3.9 +1.4,4.2 +1.5,4.5 +1.6,4.8 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+10,0.178571429,1.071428571 diff --git a/models/sbml-test-suite/cases/semantic/00975/00975-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00975/00975-sbml-l3v1.xml new file mode 100644 index 0000000000..261d9743a3 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00975/00975-sbml-l3v1.xml @@ -0,0 +1,67 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + k1 + + + + + + + + + + + + + + + + + k2 + S1 + + S2 + + + + + + + + + + + + + k3 + S2 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00975/00975-settings.txt b/models/sbml-test-suite/cases/semantic/00975/00975-settings.txt new file mode 100644 index 0000000000..2eccbf3ed4 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00975/00975-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 10 +steps: 100 +variables: S1, S2 +absolute: 0.0001 +relative: 0.0001 +amount: S1, S2 +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00976/00976-results.csv b/models/sbml-test-suite/cases/semantic/00976/00976-results.csv new file mode 100644 index 0000000000..ea6d678bb0 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00976/00976-results.csv @@ -0,0 +1,102 @@ +time,S1,S2 +0,0,0.001 +0.1,0.053652186,0.379096494 +0.2,0.092004084,0.618162126 +0.3,0.119015127,0.771837291 +0.4,0.137808014,0.872008705 +0.5,0.150770481,0.938011044 +0.6,0.159657668,0.98184809 +0.7,0.165725567,1.011131391 +0.8,0.169856797,1.030772294 +0.9,0.172664044,1.043983129 +1,0.174569116,1.052886325 +1.1,0.175860797,1.058894495 +1.2,0.176736057,1.062952708 +1.3,0.177328901,1.065695528 +1.4,0.177730345,1.067550098 +1.5,0.17800213,1.068804433 +1.6,0.178186112,1.069652964 +1.7,0.178310644,1.070227054 +1.8,0.178394933,1.070615499 +1.9,0.17845198,1.070878349 +2,0.178490589,1.071056218 +2.1,0.178516719,1.071176585 +2.2,0.178534404,1.071258041 +2.3,0.178546371,1.071313165 +2.4,0.178554471,1.07135047 +2.5,0.178559952,1.071375716 +2.6,0.178563662,1.071392802 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+9.6,0.178571429,1.071428571 +9.7,0.178571429,1.071428571 +9.8,0.178571429,1.071428571 +9.9,0.178571429,1.071428571 +10,0.178571429,1.071428571 diff --git a/models/sbml-test-suite/cases/semantic/00976/00976-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00976/00976-sbml-l3v1.xml new file mode 100644 index 0000000000..ee42cd0546 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00976/00976-sbml-l3v1.xml @@ -0,0 +1,67 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + k1 + + + + + + + + + + + + + + + + + k2 + S1 + + S2 + + + + + + + + + + + + + k3 + S2 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00976/00976-settings.txt b/models/sbml-test-suite/cases/semantic/00976/00976-settings.txt new file mode 100644 index 0000000000..2eccbf3ed4 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00976/00976-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 10 +steps: 100 +variables: S1, S2 +absolute: 0.0001 +relative: 0.0001 +amount: S1, S2 +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00977/00977-results.csv b/models/sbml-test-suite/cases/semantic/00977/00977-results.csv new file mode 100644 index 0000000000..21b3243fa5 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00977/00977-results.csv @@ -0,0 +1,102 @@ +time,S1,S2 +0,0,0.001 +0.1,0.020483491,0.131302767 +0.2,0.038612305,0.245675377 +0.3,0.054748694,0.346034626 +0.4,0.06909398,0.434117406 +0.5,0.081832679,0.511441534 +0.6,0.093133196,0.579334052 +0.7,0.103148648,0.638955761 +0.8,0.112017761,0.691322524 +0.9,0.119865836,0.737323747 +1,0.126805722,0.777738449 +1.1,0.13293879,0.813249224 +1.2,0.138355894,0.844454394 +1.3,0.143138291,0.871878589 +1.4,0.147358516,0.895981962 +1.5,0.151081216,0.917168232 +1.6,0.154363914,0.935791689 +1.7,0.157257733,0.952163326 +1.8,0.159808049,0.966556182 +1.9,0.162055097,0.979210022 +2,0.164034517,0.990335429 +2.1,0.165777856,1.000117382 +2.2,0.167313015,1.008718393 +2.3,0.168664654,1.016281253 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+9.4,0.178570337,1.071422524 +9.5,0.178570469,1.071423253 +9.6,0.178570584,1.071423894 +9.7,0.178570686,1.071424457 +9.8,0.178570776,1.071424953 +9.9,0.178570854,1.071425389 +10,0.178570923,1.071425773 diff --git a/models/sbml-test-suite/cases/semantic/00977/00977-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00977/00977-sbml-l3v1.xml new file mode 100644 index 0000000000..55c637f47f --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00977/00977-sbml-l3v1.xml @@ -0,0 +1,67 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + k1 + + + + + + + + + + + + + + + + + k2 + S1 + + S2 + + + + + + + + + + + + + k3 + S2 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00977/00977-settings.txt b/models/sbml-test-suite/cases/semantic/00977/00977-settings.txt new file mode 100644 index 0000000000..2eccbf3ed4 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00977/00977-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 10 +steps: 100 +variables: S1, S2 +absolute: 0.0001 +relative: 0.0001 +amount: S1, S2 +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00978/00978-antimony.txt b/models/sbml-test-suite/cases/semantic/00978/00978-antimony.txt new file mode 100644 index 0000000000..d7076f76fa --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00978/00978-antimony.txt @@ -0,0 +1,33 @@ +model case00978() + multitrig=0; + x = 0; + y = 0; + z = 0; + //On! + at(time>=.99), priority = 10: multitrig=2; + //Off! + at(time>=.99), priority = 9: multitrig=0; + //On! + at(time>=.99), priority = 8: multitrig=2; + //Off! + at(time>=.99), priority = 7: multitrig=0; + //On! + at(time>=.99), priority = 6: multitrig=2; + //Off! + at(time>=.99), priority = 5: multitrig=0; + //On! + at(time>=.99), priority = 4: multitrig=2; + //Off! + at(time>=.99), priority = 3: multitrig=0; + //On! + at(time>=.99), priority = 2: multitrig=2; + + //Our events that just got triggered 5 times: + // This one will end up executing five times: + at(multitrig > 1), priority = 1, persistent=true, fromTrigger=false : x = x+1; + // This one will end up executing five times, but performing the same action each time, since fromTrigger was true: + at(multitrig > 1), priority = 1, persistent=true, fromTrigger=true : y = y+1; + // And this one will only end up executing once: + at(multitrig > 1), priority = 1, persistent=false, fromTrigger=false: z = z+3; + +end diff --git a/models/sbml-test-suite/cases/semantic/00978/00978-results.csv b/models/sbml-test-suite/cases/semantic/00978/00978-results.csv new file mode 100644 index 0000000000..9d38924519 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00978/00978-results.csv @@ -0,0 +1,12 @@ +time,x,y,z +0,0,0,0 +0.2,0,0,0 +0.4,0,0,0 +0.6,0,0,0 +0.8,0,0,0 +1,5,1,3 +1.2,5,1,3 +1.4,5,1,3 +1.6,5,1,3 +1.8,5,1,3 +2,5,1,3 diff --git a/models/sbml-test-suite/cases/semantic/00978/00978-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00978/00978-sbml-l3v1.xml new file mode 100644 index 0000000000..6c9989b295 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00978/00978-sbml-l3v1.xml @@ -0,0 +1,302 @@ + + + + + + + + + + + + + + + + + time + 0.99 + + + + + + 10 + + + + + + 2 + + + + + + + + + + time + 0.99 + + + + + + 9 + + + + + + 0 + + + + + + + + + + time + 0.99 + + + + + + 8 + + + + + + 2 + + + + + + + + + + time + 0.99 + + + + + + 7 + + + + + + 0 + + + + + + + + + + time + 0.99 + + + + + + 6 + + + + + + 2 + + + + + + + + + + time + 0.99 + + + + + + 5 + + + + + + 0 + + + + + + + + + + time + 0.99 + + + + + + 4 + + + + + + 2 + + + + + + + + + + time + 0.99 + + + + + + 3 + + + + + + 0 + + + + + + + + + + time + 0.99 + + + + + + 2 + + + + + + 2 + + + + + + + + + + multitrig + 1 + + + + + + 1 + + + + + + + + x + 1 + + + + + + + + + + + multitrig + 1 + + + + + + 1 + + + + + + + + y + 1 + + + + + + + + + + + multitrig + 1 + + + + + + 1 + + + + + + + + z + 3 + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00978/00978-settings.txt b/models/sbml-test-suite/cases/semantic/00978/00978-settings.txt new file mode 100644 index 0000000000..04a38ad8a7 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00978/00978-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 2 +steps: 10 +variables: x, y, z +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00979/00979-antimony.txt b/models/sbml-test-suite/cases/semantic/00979/00979-antimony.txt new file mode 100644 index 0000000000..0a3955e626 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00979/00979-antimony.txt @@ -0,0 +1,8 @@ +model case00979() + x = 0; + y = 0; + p = 0; + q = 0; + at(time>=.98): x = 2, y = y+x; + at(time>=.99): q = p+1, p = 3; +end diff --git a/models/sbml-test-suite/cases/semantic/00979/00979-results.csv b/models/sbml-test-suite/cases/semantic/00979/00979-results.csv new file mode 100644 index 0000000000..753eba11e1 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00979/00979-results.csv @@ -0,0 +1,12 @@ +time,x,y,p,q +0,0,0,0,0 +0.2,0,0,0,0 +0.4,0,0,0,0 +0.6,0,0,0,0 +0.8,0,0,0,0 +1,2,0,3,1 +1.2,2,0,3,1 +1.4,2,0,3,1 +1.6,2,0,3,1 +1.8,2,0,3,1 +2,2,0,3,1 diff --git a/models/sbml-test-suite/cases/semantic/00979/00979-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00979/00979-sbml-l2v4.xml new file mode 100644 index 0000000000..5df4cd94bf --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00979/00979-sbml-l2v4.xml @@ -0,0 +1,67 @@ + + + + + + + + + + + + + + + + time + 0.98 + + + + + + + + + y + x + + + + + + 2 + + + + + + + + + + time + 0.99 + + + + + + + 3 + + + + + + + p + 1 + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00979/00979-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00979/00979-sbml-l3v1.xml new file mode 100644 index 0000000000..728045fded --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00979/00979-sbml-l3v1.xml @@ -0,0 +1,68 @@ + + + + + + + + + + + + + + + + + time + 0.98 + + + + + + + + + y + x + + + + + + 2 + + + + + + + + + + time + 0.99 + + + + + + + 3 + + + + + + + p + 1 + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00979/00979-settings.txt b/models/sbml-test-suite/cases/semantic/00979/00979-settings.txt new file mode 100644 index 0000000000..024bc49cb0 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00979/00979-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 2 +steps: 10 +variables: x, y, p, q +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00980/00980-antimony.txt b/models/sbml-test-suite/cases/semantic/00980/00980-antimony.txt new file mode 100644 index 0000000000..421836d7e1 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00980/00980-antimony.txt @@ -0,0 +1,8 @@ +model case00980() + x = 0; + y = 0; + p = 0; + q = 0; + at 0.1 after (time>=.99), fromTrigger=false: x = 2, y = y+x; + at 0.1 after (time>=.99), fromTrigger=false: q = p+1, p = 3; +end diff --git a/models/sbml-test-suite/cases/semantic/00980/00980-results.csv b/models/sbml-test-suite/cases/semantic/00980/00980-results.csv new file mode 100644 index 0000000000..eb5c14c5e6 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00980/00980-results.csv @@ -0,0 +1,12 @@ +time,x,y,p,q +0,0,0,0,0 +0.2,0,0,0,0 +0.4,0,0,0,0 +0.6,0,0,0,0 +0.8,0,0,0,0 +1,0,0,0,0 +1.2,2,0,3,1 +1.4,2,0,3,1 +1.6,2,0,3,1 +1.8,2,0,3,1 +2,2,0,3,1 diff --git a/models/sbml-test-suite/cases/semantic/00980/00980-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00980/00980-sbml-l2v4.xml new file mode 100644 index 0000000000..aaabf7a465 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00980/00980-sbml-l2v4.xml @@ -0,0 +1,77 @@ + + + + + + + + + + + + + + + + time + 0.98 + + + + + + 0.1 + + + + + + + + y + x + + + + + + 2 + + + + + + + + + + time + 0.99 + + + + + + 0.1 + + + + + + 3 + + + + + + + p + 1 + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00980/00980-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00980/00980-sbml-l3v1.xml new file mode 100644 index 0000000000..bbf86fc76b --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00980/00980-sbml-l3v1.xml @@ -0,0 +1,78 @@ + + + + + + + + + + + + + + + + + time + 0.98 + + + + + + 0.1 + + + + + + + + y + x + + + + + + 2 + + + + + + + + + + time + 0.99 + + + + + + 0.1 + + + + + + 3 + + + + + + + p + 1 + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00980/00980-settings.txt b/models/sbml-test-suite/cases/semantic/00980/00980-settings.txt new file mode 100644 index 0000000000..024bc49cb0 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00980/00980-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 2 +steps: 10 +variables: x, y, p, q +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00981/00981-results.csv b/models/sbml-test-suite/cases/semantic/00981/00981-results.csv new file mode 100644 index 0000000000..c72cec6f8e --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00981/00981-results.csv @@ -0,0 +1,12 @@ +time,x,y +0,0,0 +0.2,0.2,0.1 +0.4,0.4,0.2 +0.6,0.6,0.3 +0.8,0.8,0.4 +1,1,0.5 +1.2,1.2,0.6 +1.4,1.4,0.7 +1.6,1.6,0.8 +1.8,1.8,0.9 +2,2,1 diff --git a/models/sbml-test-suite/cases/semantic/00981/00981-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00981/00981-sbml-l2v4.xml new file mode 100644 index 0000000000..8cf26ccc57 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00981/00981-sbml-l2v4.xml @@ -0,0 +1,32 @@ + + + + + + + + + + + + + + 1 + + + + + + delay + x + + + time + 2 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00981/00981-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00981/00981-sbml-l3v1.xml new file mode 100644 index 0000000000..1e9d406d14 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00981/00981-sbml-l3v1.xml @@ -0,0 +1,33 @@ + + + + + + + + + + + + + + + 1 + + + + + + delay + x + + + time + 2 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00981/00981-settings.txt b/models/sbml-test-suite/cases/semantic/00981/00981-settings.txt new file mode 100644 index 0000000000..3934251d6a --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00981/00981-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 2 +steps: 10 +variables: x, y +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00982/00982-results.csv b/models/sbml-test-suite/cases/semantic/00982/00982-results.csv new file mode 100644 index 0000000000..c72cec6f8e --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00982/00982-results.csv @@ -0,0 +1,12 @@ +time,x,y +0,0,0 +0.2,0.2,0.1 +0.4,0.4,0.2 +0.6,0.6,0.3 +0.8,0.8,0.4 +1,1,0.5 +1.2,1.2,0.6 +1.4,1.4,0.7 +1.6,1.6,0.8 +1.8,1.8,0.9 +2,2,1 diff --git a/models/sbml-test-suite/cases/semantic/00982/00982-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00982/00982-sbml-l2v4.xml new file mode 100644 index 0000000000..85c81eae87 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00982/00982-sbml-l2v4.xml @@ -0,0 +1,35 @@ + + + + + + + + + + + + 1 + + + + + + + time + 2 + + + + + + + delay + x + temp + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00982/00982-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00982/00982-sbml-l3v1.xml new file mode 100644 index 0000000000..2cd53c7786 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00982/00982-sbml-l3v1.xml @@ -0,0 +1,36 @@ + + + + + + + + + + + + + 1 + + + + + + + time + 2 + + + + + + + delay + x + temp + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00982/00982-settings.txt b/models/sbml-test-suite/cases/semantic/00982/00982-settings.txt new file mode 100644 index 0000000000..3934251d6a --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00982/00982-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 2 +steps: 10 +variables: x, y +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00983/00983-results.csv b/models/sbml-test-suite/cases/semantic/00983/00983-results.csv new file mode 100644 index 0000000000..c72cec6f8e --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00983/00983-results.csv @@ -0,0 +1,12 @@ +time,x,y +0,0,0 +0.2,0.2,0.1 +0.4,0.4,0.2 +0.6,0.6,0.3 +0.8,0.8,0.4 +1,1,0.5 +1.2,1.2,0.6 +1.4,1.4,0.7 +1.6,1.6,0.8 +1.8,1.8,0.9 +2,2,1 diff --git a/models/sbml-test-suite/cases/semantic/00983/00983-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00983/00983-sbml-l2v4.xml new file mode 100644 index 0000000000..c3255a9dc0 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00983/00983-sbml-l2v4.xml @@ -0,0 +1,43 @@ + + + + + + + + + + + + 1 + + + + + + + + + -1 + temp + + + + time + 2 + + + + + + + + delay + x + temp + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00983/00983-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00983/00983-sbml-l3v1.xml new file mode 100644 index 0000000000..783adbeb98 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00983/00983-sbml-l3v1.xml @@ -0,0 +1,44 @@ + + + + + + + + + + + + + 1 + + + + + + + + + -1 + temp + + + + time + 2 + + + + + + + + delay + x + temp + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00983/00983-settings.txt b/models/sbml-test-suite/cases/semantic/00983/00983-settings.txt new file mode 100644 index 0000000000..64d83eba97 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00983/00983-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 2 +steps: 10 +variables: x, y +absolute: 0.0002 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00984/00984-results.csv b/models/sbml-test-suite/cases/semantic/00984/00984-results.csv new file mode 100644 index 0000000000..53be30228e --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00984/00984-results.csv @@ -0,0 +1,12 @@ +time,x,y +0,0,0 +0.2,0.2,0.2 +0.4,0.4,0.4 +0.6,0.6,0.6 +0.8,0.8,0.8 +1,1,0 +1.2,1.2,0.2 +1.4,1.4,0.4 +1.6,1.6,0.6 +1.8,1.8,0.8 +2,2,1 diff --git a/models/sbml-test-suite/cases/semantic/00984/00984-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00984/00984-sbml-l2v4.xml new file mode 100644 index 0000000000..cc6f0568cf --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00984/00984-sbml-l2v4.xml @@ -0,0 +1,49 @@ + + + + + + + + + + + + + + + + delay + x + temp + + + + + + 1 + + + + + + + + + + time + 0.99 + + + + + + + 1 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00984/00984-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00984/00984-sbml-l3v1.xml new file mode 100644 index 0000000000..824f6fd7f2 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00984/00984-sbml-l3v1.xml @@ -0,0 +1,50 @@ + + + + + + + + + + + + + + + + + delay + x + temp + + + + + + 1 + + + + + + + + + + time + 0.99 + + + + + + + 1 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00984/00984-settings.txt b/models/sbml-test-suite/cases/semantic/00984/00984-settings.txt new file mode 100644 index 0000000000..3934251d6a --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00984/00984-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 2 +steps: 10 +variables: x, y +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00985/00985-results.csv b/models/sbml-test-suite/cases/semantic/00985/00985-results.csv new file mode 100644 index 0000000000..325473c396 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00985/00985-results.csv @@ -0,0 +1,12 @@ +time,x,y,z +0,0,0,0 +0.2,0.2,0.2,0 +0.4,0.4,0.4,0 +0.6,0.6,0.6,0 +0.8,0.8,0.8,0 +1,1,1,0 +1.2,1.2,1,0.2 +1.4,1.4,1,0.4 +1.6,1.6,1,0.6 +1.8,1.8,1,0.8 +2,2,1,1 diff --git a/models/sbml-test-suite/cases/semantic/00985/00985-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00985/00985-sbml-l2v4.xml new file mode 100644 index 0000000000..fc1d284e2c --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00985/00985-sbml-l2v4.xml @@ -0,0 +1,35 @@ + + + + + + + + + + + + + delay + x + 1 + + + + + + 1 + + + + + + delay + x + z + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00985/00985-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00985/00985-sbml-l3v1.xml new file mode 100644 index 0000000000..a1e8699302 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00985/00985-sbml-l3v1.xml @@ -0,0 +1,36 @@ + + + + + + + + + + + + + + delay + x + 1 + + + + + + 1 + + + + + + delay + x + z + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00985/00985-settings.txt b/models/sbml-test-suite/cases/semantic/00985/00985-settings.txt new file mode 100644 index 0000000000..04a38ad8a7 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00985/00985-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 2 +steps: 10 +variables: x, y, z +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00986/00986-results.csv b/models/sbml-test-suite/cases/semantic/00986/00986-results.csv new file mode 100644 index 0000000000..57a6ec17e5 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00986/00986-results.csv @@ -0,0 +1,12 @@ +time,A,B,C +0,0,1,0 +0.2,0,0.818730753,0.181269247 +0.4,0,0.670320046,0.329679954 +0.6,0,0.548811636,0.451188364 +0.8,0,0.449328964,0.550671036 +1,0,0.367879441,0.632120559 +1.2,0,0.301194212,0.698805788 +1.4,0,0.246596964,0.753403036 +1.6,0,0.201896518,0.798103482 +1.8,0,0.165298888,0.834701112 +2,0,0.135335283,0.864664717 diff --git a/models/sbml-test-suite/cases/semantic/00986/00986-sbml-l1v2.xml b/models/sbml-test-suite/cases/semantic/00986/00986-sbml-l1v2.xml new file mode 100644 index 0000000000..e95925f571 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00986/00986-sbml-l1v2.xml @@ -0,0 +1,33 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00986/00986-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00986/00986-sbml-l2v4.xml new file mode 100644 index 0000000000..1f4abf4736 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00986/00986-sbml-l2v4.xml @@ -0,0 +1,49 @@ + + + + + + + + + + + + + + + + + + + + + + + + 1 + A + + + + + + + + + + + + + + + + 1 + B + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00986/00986-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00986/00986-sbml-l3v1.xml new file mode 100644 index 0000000000..ae98f4f3cc --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00986/00986-sbml-l3v1.xml @@ -0,0 +1,50 @@ + + + + + + + + + + + + + + + + + + + + + + + + + 1 + A + + + + + + + + + + + + + + + + 1 + B + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00986/00986-settings.txt b/models/sbml-test-suite/cases/semantic/00986/00986-settings.txt new file mode 100644 index 0000000000..888fedbdd1 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00986/00986-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 2 +steps: 10 +variables: A, B, C +absolute: 0.0001 +relative: 0.0001 +amount: A, B, C +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00987/00987-results.csv b/models/sbml-test-suite/cases/semantic/00987/00987-results.csv new file mode 100644 index 0000000000..748a4c164f --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00987/00987-results.csv @@ -0,0 +1,12 @@ +time,A,B,C +0,1,0,0 +0.2,1,0,0 +0.4,1,0,0 +0.6,1,0,0 +0.8,1,0,0 +1,0,0.990049834,0.009950166 +1.2,0,0.810584246,0.189415754 +1.4,0,0.66365025,0.33634975 +1.6,0,0.543350869,0.456649131 +1.8,0,0.444858066,0.555141934 +2,0,0.36421898,0.63578102 diff --git a/models/sbml-test-suite/cases/semantic/00987/00987-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00987/00987-sbml-l2v4.xml new file mode 100644 index 0000000000..4f124fb557 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00987/00987-sbml-l2v4.xml @@ -0,0 +1,72 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + k1 + A + + + + + + + + + + + + + + + + k1 + B + + + + + + + + + + + + time + 0.99 + + + + + + + 1 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00987/00987-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00987/00987-sbml-l3v1.xml new file mode 100644 index 0000000000..53fca418da --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00987/00987-sbml-l3v1.xml @@ -0,0 +1,73 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + k1 + A + + + + + + + + + + + + + + + + k1 + B + + + + + + + + + + + + time + 0.99 + + + + + + + 1 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00987/00987-settings.txt b/models/sbml-test-suite/cases/semantic/00987/00987-settings.txt new file mode 100644 index 0000000000..888fedbdd1 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00987/00987-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 2 +steps: 10 +variables: A, B, C +absolute: 0.0001 +relative: 0.0001 +amount: A, B, C +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00988/00988-antimony.txt b/models/sbml-test-suite/cases/semantic/00988/00988-antimony.txt new file mode 100644 index 0000000000..1c79a03871 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00988/00988-antimony.txt @@ -0,0 +1,24 @@ +//Created by libAntimony v2.1-beta +model *case00988() + + species A in comp, B in comp; + // Reactions: + slow: B -> A; k1 ; + fast: A -> B; k2 * A; + + // Events: + E0: at (A>=1): k2 = 1; + E1: at 0.1 after (A>=1): k2 = 0; + + // Species initializations: + A = 0/comp; + B = 2/comp; + comp = 1; + + // Variable initializations: + k1 = 1; + k2 = 0; + + //Other declarations: + var k1; +end diff --git a/models/sbml-test-suite/cases/semantic/00988/00988-results.csv b/models/sbml-test-suite/cases/semantic/00988/00988-results.csv new file mode 100644 index 0000000000..82fb7410d2 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00988/00988-results.csv @@ -0,0 +1,22 @@ +time,A,B +0,0,2 +0.1,0.1,1.9 +0.2,0.2,1.8 +0.3,0.3,1.7 +0.4,0.4,1.6 +0.5,0.5,1.5 +0.6,0.6,1.4 +0.7,0.7,1.3 +0.8,0.8,1.2 +0.9,0.9,1.1 +1,0,2 +1.1,0.01,1.99 +1.2,0.11,1.89 +1.3,0.21,1.79 +1.4,0.31,1.69 +1.5,0.41,1.59 +1.6,0.51,1.49 +1.7,0.61,1.39 +1.8,0.71,1.29 +1.9,0.81,1.19 +2,0.91,1.09 diff --git a/models/sbml-test-suite/cases/semantic/00988/00988-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00988/00988-sbml-l2v4.xml new file mode 100644 index 0000000000..0115303742 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00988/00988-sbml-l2v4.xml @@ -0,0 +1,91 @@ + + + + + + + + + + + + + + + + + + + + + + + + + k1 + + + + + + + + + + + + + + + k2 + A + + + + + + + + + + + + A + 0.99 + + + + + + + 1 + + + + + + + + + + A + 0.99 + + + + + + 0.1 + + + + + + 0 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00988/00988-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/00988/00988-sbml-l3v1.xml new file mode 100644 index 0000000000..d568b68f84 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00988/00988-sbml-l3v1.xml @@ -0,0 +1,92 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + k1 + + + + + + + + + + + + + + + k2 + A + + + + + + + + + + + + A + 0.99 + + + + + + + 1 + + + + + + + + + + A + 0.99 + + + + + + 0.1 + + + + + + 0 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00988/00988-settings.txt b/models/sbml-test-suite/cases/semantic/00988/00988-settings.txt new file mode 100644 index 0000000000..3610745d6f --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00988/00988-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 2 +steps: 20 +variables: A, B +absolute: 0.001 +relative: 0.001 +amount: A, B +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00989/00989-results.csv b/models/sbml-test-suite/cases/semantic/00989/00989-results.csv new file mode 100644 index 0000000000..91da47be65 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00989/00989-results.csv @@ -0,0 +1,102 @@ +time,X,Y +0,1,1 +0.1,1.105170918,1.105170918 +0.2,1.221402758,1.221402758 +0.3,1.349858808,1.349858808 +0.4,1.491824698,1.491824698 +0.5,1.648721271,1.648721271 +0.6,1.8221188,1.8221188 +0.7,2.013752708,2.013752708 +0.8,2.225540929,2.225540929 +0.9,2.459603111,2.459603111 +1,2.718281829,2.718281829 +1.1,3.004166024,3.004166024 +1.2,3.320116923,3.320116923 +1.3,3.669296668,3.669296668 +1.4,4.055199967,4.055199967 +1.5,4.481689071,4.481689071 +1.6,4.953032425,4.953032425 +1.7,5.473947392,5.473947392 +1.8,6.049647465,6.049647465 +1.9,6.685894443,6.685894443 +2,7.3890561,7.3890561 +2.1,8.166169913,8.166169913 +2.2,9.0250135,9.0250135 +2.3,9.974182456,9.974182456 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+9.3,10938.01921,10938.01921 +9.4,12088.38073,12088.38073 +9.5,13359.72683,13359.72683 +9.6,14764.78157,14764.78157 +9.7,16317.6072,16317.6072 +9.8,18033.74493,18033.74493 +9.9,19930.37044,19930.37044 +10,22026.4658,22026.4658 diff --git a/models/sbml-test-suite/cases/semantic/00989/00989-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00989/00989-sbml-l2v4.xml new file mode 100644 index 0000000000..7544036e87 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00989/00989-sbml-l2v4.xml @@ -0,0 +1,47 @@ + + + + + + + + + + + + + + + + + + + + X + + + + + + + k1 + + + + + + + + + + + + k1 + Y + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00989/00989-settings.txt b/models/sbml-test-suite/cases/semantic/00989/00989-settings.txt new file mode 100644 index 0000000000..c9d4808a8b --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00989/00989-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 10 +steps: 100 +variables: X, Y +absolute: 0.0001 +relative: 0.0001 +amount: X, Y +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00990/00990-results.csv b/models/sbml-test-suite/cases/semantic/00990/00990-results.csv new file mode 100644 index 0000000000..66264ba345 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00990/00990-results.csv @@ -0,0 +1,102 @@ +time,X +0,1 +0.1,1.105 +0.2,1.22 +0.3,1.345 +0.4,1.48 +0.5,1.625 +0.6,1.78 +0.7,1.945 +0.8,2.12 +0.9,2.305 +1,2.5 +1.1,2.705 +1.2,2.92 +1.3,3.145 +1.4,3.38 +1.5,3.625 +1.6,3.88 +1.7,4.145 +1.8,4.42 +1.9,4.705 +2,5 +2.1,5.305 +2.2,5.62 +2.3,5.945 +2.4,6.28 +2.5,6.625 +2.6,6.98 +2.7,7.345 +2.8,7.72 +2.9,8.105 +3,8.5 +3.1,8.905 +3.2,9.32 +3.3,9.745 +3.4,10.18 +3.5,10.625 +3.6,11.08 +3.7,11.545 +3.8,12.02 +3.9,12.505 +4,13 +4.1,13.505 +4.2,14.02 +4.3,14.545 +4.4,15.08 +4.5,15.625 +4.6,16.18 +4.7,16.745 +4.8,17.32 +4.9,17.905 +5,18.5 +5.1,19.105 +5.2,19.72 +5.3,20.345 +5.4,20.98 +5.5,21.625 +5.6,22.28 +5.7,22.945 +5.8,23.62 +5.9,24.305 +6,25 +6.1,25.705 +6.2,26.42 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/dev/null +++ b/models/sbml-test-suite/cases/semantic/00990/00990-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 10 +steps: 100 +variables: X +absolute: 0.0001 +relative: 0.0001 +amount: X +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00991/00991-results.csv b/models/sbml-test-suite/cases/semantic/00991/00991-results.csv new file mode 100644 index 0000000000..0ae989b4a2 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00991/00991-results.csv @@ -0,0 +1,22 @@ +time,X +0,1 +0.1,1.1 +0.2,1.2 +0.3,1.3 +0.4,1.4 +0.5,1.5 +0.6,1.6 +0.7,1.7 +0.8,1.8 +0.9,1.9 +1,2 +1.1,2.2 +1.2,2.4 +1.3,2.6 +1.4,2.8 +1.5,3 +1.6,3.2 +1.7,3.4 +1.8,3.6 +1.9,3.8 +2,4 diff --git a/models/sbml-test-suite/cases/semantic/00991/00991-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/00991/00991-sbml-l2v4.xml new file mode 100644 index 0000000000..5ca90203b5 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00991/00991-sbml-l2v4.xml @@ -0,0 +1,53 @@ + + + + + + + + + + + + + + + + + + + + p1 + + + + + + + k1 + + + + + + + + + + + X + 2 + + + + + + + 2 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/00991/00991-settings.txt b/models/sbml-test-suite/cases/semantic/00991/00991-settings.txt new file mode 100644 index 0000000000..8bc7254928 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00991/00991-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 2 +steps: 20 +variables: X +absolute: 0.0001 +relative: 0.0001 +amount: X +concentration: diff --git a/models/sbml-test-suite/cases/semantic/00992/00992-results.csv b/models/sbml-test-suite/cases/semantic/00992/00992-results.csv new file mode 100644 index 0000000000..53f242c667 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/00992/00992-results.csv @@ -0,0 +1,102 @@ +time,X +0,1 +0.1,1.105170918 +0.2,1.221402758 +0.3,1.349858808 +0.4,1.491824698 +0.5,1.648721271 +0.6,1.8221188 +0.7,2.013752708 +0.8,2.225540929 +0.9,2.459603111 +1,2.718281829 +1.1,3.004166024 +1.2,3.320116923 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a/models/sbml-test-suite/cases/semantic/01017/01017-sbml-l2v4.xml b/models/sbml-test-suite/cases/semantic/01017/01017-sbml-l2v4.xml new file mode 100644 index 0000000000..1318a6ab58 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01017/01017-sbml-l2v4.xml @@ -0,0 +1,64 @@ + + + + + + + + + + + + + + + + + + + + 1 -7 + + + + + + + + + + + + + + + + + k1 + S1 + S2 + + + + + + + + + + + + + + + + + k2 + S3 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01017/01017-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/01017/01017-sbml-l3v1.xml new file mode 100644 index 0000000000..cd42ae3377 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01017/01017-sbml-l3v1.xml @@ -0,0 +1,81 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 1 -7 + + + + + + + + + + + + + + + + + k1 + S1 + S2 + + + + + + + + + + + + + + + + + k2 + S3 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01017/01017-settings.txt 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b/models/sbml-test-suite/cases/semantic/01120/01120-settings.txt new file mode 100644 index 0000000000..827d4c8680 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01120/01120-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 2 +steps: 20 +variables: comp, S3 +absolute: 0.0001 +relative: 0.0001 +amount: S3 +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01121/01121-results.csv b/models/sbml-test-suite/cases/semantic/01121/01121-results.csv new file mode 100644 index 0000000000..6ab13a0ae7 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01121/01121-results.csv @@ -0,0 +1,307 @@ +time, S1, S2, S3, S4, k1, k2, k3, k4, k5, kavo, comp, comp2 +0,1,3,4,2,1.1,8.12,2.5,1,2.8,1.000023545,5,1 +0.009836066,0.743383395,3.044697171,4,2,1.1,8.12,2.5,1.000048368,2.8,1.000023545,5.009836066,1.000048368 +0.019672131,0.486914228,3.076159836,4,2,1.1,8.12,2.5,1.00019349,2.8,1.000023545,5.019672131,1.00019349 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a/models/sbml-test-suite/cases/semantic/01151/01151-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/01151/01151-sbml-l3v1.xml new file mode 100644 index 0000000000..98dbd06f3f --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01151/01151-sbml-l3v1.xml @@ -0,0 +1,48 @@ + + + + + + + + + + + + + + 3 + + + + + + + + + + + + + + + + + + + + + + + + 4 + p80 + + 3 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01151/01151-settings.txt b/models/sbml-test-suite/cases/semantic/01151/01151-settings.txt new file mode 100644 index 0000000000..ce8f13c8af --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01151/01151-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1 +steps: 10 +variables: p8 +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01152/01152-results.csv b/models/sbml-test-suite/cases/semantic/01152/01152-results.csv new file mode 100644 index 0000000000..ae9f7ac3bd --- /dev/null +++ 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a/models/sbml-test-suite/cases/semantic/01163/01163-settings.txt b/models/sbml-test-suite/cases/semantic/01163/01163-settings.txt new file mode 100644 index 0000000000..ce8f13c8af --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01163/01163-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1 +steps: 10 +variables: p8 +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01164/01164-results.csv b/models/sbml-test-suite/cases/semantic/01164/01164-results.csv new file mode 100644 index 0000000000..f0017bab1c --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01164/01164-results.csv @@ -0,0 +1,12 @@ +time,submod1__S,submod1__E,submod1__D,submod1__ES,submod2__S,submod2__E,submod2__D,submod2__ES +0,1,1,1,1,1,1,1,1 +0.1,0.826224455,0.880489294,1.054264839,1.119510706,0.826224455,0.880489294,1.054264839,1.119510706 +0.2,0.688713681,0.803334579,1.114620897,1.196665421,0.688713681,0.803334579,1.114620897,1.196665421 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b/models/sbml-test-suite/cases/semantic/01173/01173-sbml-l3v1.xml new file mode 100644 index 0000000000..a3e67719db --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01173/01173-sbml-l3v1.xml @@ -0,0 +1,45 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + time + + + + + + delay + t1 + 3 + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01173/01173-settings.txt b/models/sbml-test-suite/cases/semantic/01173/01173-settings.txt new file mode 100644 index 0000000000..dfee5e8fe0 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01173/01173-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1 +steps: 10 +variables: t1, t3 +absolute: 0.0001 +relative: 0.0001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01174/01174-results.csv b/models/sbml-test-suite/cases/semantic/01174/01174-results.csv new file mode 100644 index 0000000000..8e0afee522 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01174/01174-results.csv @@ 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a/models/sbml-test-suite/cases/semantic/01176/01176-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/01176/01176-sbml-l3v1.xml new file mode 100644 index 0000000000..726b44043a --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01176/01176-sbml-l3v1.xml @@ -0,0 +1,66 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + time + + + + + + + + + + + + + + delay + t5 + 0.2 + + time + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01176/01176-settings.txt b/models/sbml-test-suite/cases/semantic/01176/01176-settings.txt new file mode 100644 index 0000000000..e85da605f0 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01176/01176-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1 +steps: 10 +variables: t5, s1 +absolute: 0.0001 +relative: 0.0001 +amount: s1 +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01177/01177-results.csv b/models/sbml-test-suite/cases/semantic/01177/01177-results.csv new file mode 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b/models/sbml-test-suite/cases/semantic/01185/01185-settings.txt @@ -0,0 +1,8 @@ +start: 0 +duration: 1 +steps: 10 +variables: S1, k1, y +absolute: 0.0001 +relative: 0.0001 +amount: S1 +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01186/01186-results.csv b/models/sbml-test-suite/cases/semantic/01186/01186-results.csv new file mode 100644 index 0000000000..0c27364a6e --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01186/01186-results.csv @@ -0,0 +1,2 @@ +R01,R26,OBJF +1.0,1.0,1.0 diff --git a/models/sbml-test-suite/cases/semantic/01186/01186-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/01186/01186-sbml-l3v1.xml new file mode 100644 index 0000000000..db7ca7d449 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01186/01186-sbml-l3v1.xml @@ -0,0 +1,633 @@ + + + + + +

+ Maximize single objective function, hard bounds. +

+ + + + + + + + + + Olivier + Brett + + bgoli@users.sourceforge.net + + VU university Amsterdam + + + + + + 2012-12-21T11:05:21Z + + + 2012-12-21T10:05:21Z + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

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subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01186/01186-settings.txt b/models/sbml-test-suite/cases/semantic/01186/01186-settings.txt new file mode 100644 index 0000000000..6e3223508d --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01186/01186-settings.txt @@ -0,0 +1,8 @@ +start: +duration: +steps: +variables: R01,R26,OBJF +absolute: 0.001 +relative: 0.001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01187/01187-results.csv b/models/sbml-test-suite/cases/semantic/01187/01187-results.csv new file mode 100644 index 0000000000..dceda79dd0 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01187/01187-results.csv @@ -0,0 +1,2 @@ +R01,R26,OBJF +0.0,0.0,0.0 diff --git a/models/sbml-test-suite/cases/semantic/01187/01187-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/01187/01187-sbml-l3v1.xml new file mode 100644 index 0000000000..5ffaf9c136 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01187/01187-sbml-l3v1.xml @@ -0,0 +1,633 @@ + + + + + +

+ Minimize single objective function, hard bounds. +

+ + + + + + + + + + Olivier + Brett + + bgoli@users.sourceforge.net + + VU university Amsterdam + + + + + + 2012-12-21T11:05:21Z + + + 2012-12-21T10:05:21Z + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01187/01187-settings.txt b/models/sbml-test-suite/cases/semantic/01187/01187-settings.txt new file mode 100644 index 0000000000..6e3223508d --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01187/01187-settings.txt @@ -0,0 +1,8 @@ +start: +duration: +steps: +variables: R01,R26,OBJF +absolute: 0.001 +relative: 0.001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01188/01188-results.csv b/models/sbml-test-suite/cases/semantic/01188/01188-results.csv new file mode 100644 index 0000000000..0c27364a6e --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01188/01188-results.csv @@ -0,0 +1,2 @@ +R01,R26,OBJF +1.0,1.0,1.0 diff --git a/models/sbml-test-suite/cases/semantic/01188/01188-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/01188/01188-sbml-l3v1.xml new file mode 100644 index 0000000000..d5b643f090 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01188/01188-sbml-l3v1.xml @@ -0,0 +1,633 @@ + + + + + +

+ Maximize single objective function, infinite bounds. +

+ + + + + + + + + + Olivier + Brett + + bgoli@users.sourceforge.net + + VU university Amsterdam + + + + + + 2012-12-21T11:05:21Z + + + 2012-12-21T10:05:21Z + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01188/01188-settings.txt b/models/sbml-test-suite/cases/semantic/01188/01188-settings.txt new file mode 100644 index 0000000000..6e3223508d --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01188/01188-settings.txt @@ -0,0 +1,8 @@ +start: +duration: +steps: +variables: R01,R26,OBJF +absolute: 0.001 +relative: 0.001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01189/01189-results.csv b/models/sbml-test-suite/cases/semantic/01189/01189-results.csv new file mode 100644 index 0000000000..dceda79dd0 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01189/01189-results.csv @@ -0,0 +1,2 @@ +R01,R26,OBJF +0.0,0.0,0.0 diff --git a/models/sbml-test-suite/cases/semantic/01189/01189-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/01189/01189-sbml-l3v1.xml new file mode 100644 index 0000000000..dce328627b --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01189/01189-sbml-l3v1.xml @@ -0,0 +1,633 @@ + + + + + +

+ Minimize single objective function, infinite bounds. +

+ + + + + + + + + + Olivier + Brett + + bgoli@users.sourceforge.net + + VU university Amsterdam + + + + + + 2012-12-21T11:05:21Z + + + 2012-12-21T10:05:21Z + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01189/01189-settings.txt b/models/sbml-test-suite/cases/semantic/01189/01189-settings.txt new file mode 100644 index 0000000000..6e3223508d --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01189/01189-settings.txt @@ -0,0 +1,8 @@ +start: +duration: +steps: +variables: R01,R26,OBJF +absolute: 0.001 +relative: 0.001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01190/01190-results.csv b/models/sbml-test-suite/cases/semantic/01190/01190-results.csv new file mode 100644 index 0000000000..89aac284f2 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01190/01190-results.csv @@ -0,0 +1,2 @@ +R01,R26,OBJF +1.0,1.0,0.5 diff --git a/models/sbml-test-suite/cases/semantic/01190/01190-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/01190/01190-sbml-l3v1.xml new file mode 100644 index 0000000000..bbc75f0a1a --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01190/01190-sbml-l3v1.xml @@ -0,0 +1,633 @@ + + + + + +

+ Maximize single objective function, non-unitary objective flux coefficient +

+ + + + + + + + + + Olivier + Brett + + bgoli@users.sourceforge.net + + VU university Amsterdam + + + + + + 2012-12-21T11:05:21Z + + + 2012-12-21T10:05:21Z + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01190/01190-settings.txt b/models/sbml-test-suite/cases/semantic/01190/01190-settings.txt new file mode 100644 index 0000000000..6e3223508d --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01190/01190-settings.txt @@ -0,0 +1,8 @@ +start: +duration: +steps: +variables: R01,R26,OBJF +absolute: 0.001 +relative: 0.001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01191/01191-results.csv b/models/sbml-test-suite/cases/semantic/01191/01191-results.csv new file mode 100644 index 0000000000..566d0433e2 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01191/01191-results.csv @@ -0,0 +1,2 @@ +R01,R26,OBJF2 +1.0,1.0,1.0 diff --git a/models/sbml-test-suite/cases/semantic/01191/01191-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/01191/01191-sbml-l3v1.xml new file mode 100644 index 0000000000..38b0fdea17 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01191/01191-sbml-l3v1.xml @@ -0,0 +1,638 @@ + + + + + +

+ Multiple objectives defined, optimize active one (maximize) +

+ + + + + + + + + + Olivier + Brett + + bgoli@users.sourceforge.net + + VU university Amsterdam + + + + + + 2012-12-21T11:05:21Z + + + 2012-12-21T10:05:21Z + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01191/01191-settings.txt b/models/sbml-test-suite/cases/semantic/01191/01191-settings.txt new file mode 100644 index 0000000000..1842b9c11e --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01191/01191-settings.txt @@ -0,0 +1,8 @@ +start: +duration: +steps: +variables: R01,R26,OBJF2 +absolute: 0.001 +relative: 0.001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01192/01192-results.csv b/models/sbml-test-suite/cases/semantic/01192/01192-results.csv new file mode 100644 index 0000000000..4e7c731662 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01192/01192-results.csv @@ -0,0 +1,2 @@ +R01,R26,R10,R07,OBJF +1.0,1.0,1.0,0.0,2.0 diff --git a/models/sbml-test-suite/cases/semantic/01192/01192-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/01192/01192-sbml-l3v1.xml new file mode 100644 index 0000000000..f4c8dcaa29 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01192/01192-sbml-l3v1.xml @@ -0,0 +1,634 @@ + + + + + +

+ Single objective, multiple flux objectives +

+ + + + + + + + + + Olivier + Brett + + bgoli@users.sourceforge.net + + VU university Amsterdam + + + + + + 2012-12-21T11:05:21Z + + + 2012-12-21T10:05:21Z + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C2

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subsystem: C2

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subsystem: C2

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subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01192/01192-settings.txt b/models/sbml-test-suite/cases/semantic/01192/01192-settings.txt new file mode 100644 index 0000000000..ffc04deeba --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01192/01192-settings.txt @@ -0,0 +1,8 @@ +start: +duration: +steps: +variables: R01,R26,R10,R07,OBJF +absolute: 0.001 +relative: 0.001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01193/01193-results.csv b/models/sbml-test-suite/cases/semantic/01193/01193-results.csv new file mode 100644 index 0000000000..d2168d88a4 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01193/01193-results.csv @@ -0,0 +1,2 @@ +R01,R26,R10,R07,OBJF +1.0,1.0,0.5,0.5,1.0 diff --git a/models/sbml-test-suite/cases/semantic/01193/01193-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/01193/01193-sbml-l3v1.xml new file mode 100644 index 0000000000..7559683246 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01193/01193-sbml-l3v1.xml @@ -0,0 +1,633 @@ + + + + + +

+ Single objective, test R07 GE 0.5, R10 GE 0.5 +

+ + + + + + + + + + Olivier + Brett + + bgoli@users.sourceforge.net + + VU university Amsterdam + + + + + + 2012-12-21T11:05:21Z + + + 2012-12-21T10:05:21Z + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

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subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C1

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subsystem: C1

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subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C1

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subsystem: C2

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subsystem: C2

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subsystem: C2

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subsystem: C2

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subsystem: C2

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subsystem: C3

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subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01193/01193-settings.txt b/models/sbml-test-suite/cases/semantic/01193/01193-settings.txt new file mode 100644 index 0000000000..ffc04deeba --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01193/01193-settings.txt @@ -0,0 +1,8 @@ +start: +duration: +steps: +variables: R01,R26,R10,R07,OBJF +absolute: 0.001 +relative: 0.001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01194/01194-results.csv b/models/sbml-test-suite/cases/semantic/01194/01194-results.csv new file mode 100644 index 0000000000..23fdfa8aa3 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01194/01194-results.csv @@ -0,0 +1,2 @@ +R01,R07,R10,OBJF,R26,R25 +1.0,0.2,0.3,0.75,0.75,0.5 diff --git a/models/sbml-test-suite/cases/semantic/01194/01194-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/01194/01194-sbml-l3v1.xml new file mode 100644 index 0000000000..d5c4c21954 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01194/01194-sbml-l3v1.xml @@ -0,0 +1,633 @@ + + + + + +

+ Single objective, test R07 LE 0.2, R10 LE 0.3 +

+ + + + + + + + + + Olivier + Brett + + bgoli@users.sourceforge.net + + VU university Amsterdam + + + + + + 2012-12-21T11:05:22Z + + + 2012-12-21T10:05:22Z + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01194/01194-settings.txt b/models/sbml-test-suite/cases/semantic/01194/01194-settings.txt new file mode 100644 index 0000000000..d2718d5115 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01194/01194-settings.txt @@ -0,0 +1,8 @@ +start: +duration: +steps: +variables: R01,R07,R10,OBJF,R26,R25 +absolute: 0.001 +relative: 0.001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01195/01195-results.csv b/models/sbml-test-suite/cases/semantic/01195/01195-results.csv new file mode 100644 index 0000000000..1089a0ace4 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01195/01195-results.csv @@ -0,0 +1,2 @@ +R01,R07,R10,OBJF,R26,R25 +0.9,0.2,0.3,0.7,0.7,0.4 diff --git a/models/sbml-test-suite/cases/semantic/01195/01195-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/01195/01195-sbml-l3v1.xml new file mode 100644 index 0000000000..8568989144 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01195/01195-sbml-l3v1.xml @@ -0,0 +1,630 @@ + + + + + +

+ Single objective, test: R07 EQ 0.2, R10 EQ 0.2, R25 EQ 0.6 +

+ + + + + + + + + + Olivier + Brett + + bgoli@users.sourceforge.net + + VU university Amsterdam + + + + + + 2012-12-21T11:05:22Z + + + 2012-12-21T10:05:22Z + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01195/01195-settings.txt b/models/sbml-test-suite/cases/semantic/01195/01195-settings.txt new file mode 100644 index 0000000000..d2718d5115 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01195/01195-settings.txt @@ -0,0 +1,8 @@ +start: +duration: +steps: +variables: R01,R07,R10,OBJF,R26,R25 +absolute: 0.001 +relative: 0.001 +amount: +concentration: diff --git a/models/sbml-test-suite/cases/semantic/01196/01196-results.csv b/models/sbml-test-suite/cases/semantic/01196/01196-results.csv new file mode 100644 index 0000000000..2b86674b0a --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01196/01196-results.csv @@ -0,0 +1,2 @@ +OBJF +NaN diff --git a/models/sbml-test-suite/cases/semantic/01196/01196-sbml-l3v1.xml b/models/sbml-test-suite/cases/semantic/01196/01196-sbml-l3v1.xml new file mode 100644 index 0000000000..befe95eea1 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01196/01196-sbml-l3v1.xml @@ -0,0 +1,633 @@ + + + + + +

+ Infeasible solution, should return a nan +

+ + + + + + + + + + Olivier + Brett + + bgoli@users.sourceforge.net + + VU university Amsterdam + + + + + + 2012-12-21T11:05:22Z + + + 2012-12-21T10:05:22Z + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C1

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C2

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: C4

+ + + + + + + + + + + + + + + + + +

subsystem: L

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + +

subsystem: C3

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/models/sbml-test-suite/cases/semantic/01196/01196-settings.txt b/models/sbml-test-suite/cases/semantic/01196/01196-settings.txt new file mode 100644 index 0000000000..9681782924 --- /dev/null +++ b/models/sbml-test-suite/cases/semantic/01196/01196-settings.txt @@ -0,0 +1,8 @@ +start: +duration: +steps: +variables: OBJF +absolute: 0.001 +relative: 0.001 +amount: +concentration: diff --git a/third_party/unit_test/src/TestRunner.h b/third_party/unit_test/src/TestRunner.h index b2e8b00a57..30fc1c0738 100644 --- a/third_party/unit_test/src/TestRunner.h +++ b/third_party/unit_test/src/TestRunner.h @@ -48,6 +48,8 @@ class TestRunner } int Finish() const; + TestResults* GetTestResults() { return m_result; } + private: TestReporter* m_reporter; TestResults* m_result; diff --git a/wrappers/C/Testing/main.cpp b/wrappers/C/Testing/main.cpp index f89459c662..ad7e4610e9 100644 --- a/wrappers/C/Testing/main.cpp +++ b/wrappers/C/Testing/main.cpp @@ -193,7 +193,7 @@ int main(int argc, char* argv[]) //Finish outputs result to xml file runner1.Finish(); - return 0; + return runner1.GetTestResults()->GetFailureCount(); } bool setup(Args& args)