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main.py
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import argparse
import os
import runBMCA
# ant, data_file, output_dir, n_iter,
# all data
runBMCA.runBMCA('data/interim/Antimony/JSexample22.ant',
'data/interim/generated_data/JSexample22-noReg/JSexample22',
'data/interim/generated_data/JSexample22-noReg', 5)
runBMCA.runBMCA('data/interim/Antimony/JSexample22_reg1.ant',
'data/interim/generated_data/JSexample22-reg1/JSexample22_reg1',
'data/interim/generated_data/JSexample22-reg1', 5)
runBMCA.runBMCA('data/interim/Antimony/JSexample22_reg2.ant',
'data/interim/generated_data/JSexample22-reg2/JSexample22_reg2',
'data/interim/generated_data/JSexample22-reg2', 5)
# omitted fluxes
runBMCA.runBMCA('data/interim/Antimony/JSexample22.ant',
'data/interim/generated_data/JSexample22-noReg/JSexample22',
'data/interim/generated_data/JSexample22-noReg', 5,
omit='fluxes')
runBMCA.runBMCA('data/interim/Antimony/JSexample22_reg1.ant',
'data/interim/generated_data/JSexample22-reg1/JSexample22_reg1',
'data/interim/generated_data/JSexample22-reg1', 5,
omit='fluxes')
runBMCA.runBMCA('data/interim/Antimony/JSexample22_reg2.ant',
'data/interim/generated_data/JSexample22-reg2/JSexample22_reg2',
'data/interim/generated_data/JSexample22-reg2', 5,
omit='fluxes')
# omitted enzymes
runBMCA.runBMCA('data/interim/Antimony/JSexample22.ant',
'data/interim/generated_data/JSexample22-noReg/JSexample22',
'data/interim/generated_data/JSexample22-noReg', 5,
omit='enzymes')
runBMCA.runBMCA('data/interim/Antimony/JSexample22_reg1.ant',
'data/interim/generated_data/JSexample22-reg1/JSexample22_reg1',
'data/interim/generated_data/JSexample22-reg1', 5,
omit='enzymes')
runBMCA.runBMCA('data/interim/Antimony/JSexample22_reg2.ant',
'data/interim/generated_data/JSexample22-reg2/JSexample22_reg2',
'data/interim/generated_data/JSexample22-reg2', 5,
omit='enzymes')
# omitted internal
runBMCA.runBMCA('data/interim/Antimony/JSexample22.ant',
'data/interim/generated_data/JSexample22-noReg/JSexample22',
'data/interim/generated_data/JSexample22-noReg', 5,
omit='internal')
runBMCA.runBMCA('data/interim/Antimony/JSexample22_reg1.ant',
'data/interim/generated_data/JSexample22-reg1/JSexample22_reg1',
'data/interim/generated_data/JSexample22-reg1', 5,
omit='internal')
runBMCA.runBMCA('data/interim/Antimony/JSexample22_reg2.ant',
'data/interim/generated_data/JSexample22-reg2/JSexample22_reg2',
'data/interim/generated_data/JSexample22-reg2', 5,
omit='internal')
# omitted external
runBMCA.runBMCA('data/interim/Antimony/JSexample22.ant',
'data/interim/generated_data/JSexample22-noReg/JSexample22',
'data/interim/generated_data/JSexample22-noReg', 5,
omit='external')
runBMCA.runBMCA('data/interim/Antimony/JSexample22_reg1.ant',
'data/interim/generated_data/JSexample22-reg1/JSexample22_reg1',
'data/interim/generated_data/JSexample22-reg1', 5,
omit='external')
runBMCA.runBMCA('data/interim/Antimony/JSexample22_reg2.ant',
'data/interim/generated_data/JSexample22-reg2/JSexample22_reg2',
'data/interim/generated_data/JSexample22-reg2', 5,
omit='external')