From f537d700051f6f21934c1ca3baaad7d883f07856 Mon Sep 17 00:00:00 2001
From: mgaynor1 <shellygaynor@Shellys-MBP.attlocal.net>
Date: Mon, 2 Dec 2024 13:37:07 -0500
Subject: [PATCH 1/3] gators yaml added

---
 inst/extdata/packages/gatoRs.yaml | 32 +++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)
 create mode 100644 inst/extdata/packages/gatoRs.yaml

diff --git a/inst/extdata/packages/gatoRs.yaml b/inst/extdata/packages/gatoRs.yaml
new file mode 100644
index 0000000..1bd5088
--- /dev/null
+++ b/inst/extdata/packages/gatoRs.yaml
@@ -0,0 +1,32 @@
+name : gatoRs
+title: "Geographic and Taxonomic Occurrence R-Based Scrubbing"
+version: 1.0.2
+author: "Natalie N. Patten, Michelle L. Gaynor, Douglas E. Soltis, Pamela S. Soltis"
+maintainer: "Natalie N. Patten <natalienpatten@gmail.com>"
+cran: yes
+repository: "https://github.com/nataliepatten/gatoRs"
+description: "Streamlines downloading and cleaning biodiversity data from Integrated Digitized Biocollections (iDigBio) and the Global Biodiversity Information Facility (GBIF)."
+occ_acquisition: yes
+occ_cleaning: yes
+data_integration: no
+env_collinearity: no
+env_process: no
+bias: yes
+study_region: no
+backg_sample: no
+data_partitioning: no
+mod_fit: no
+mod_tuning: no
+mod_ensemble: no
+mod_stack: yes
+mod_evaluate: no
+mod_multispecies: no
+mod_mechanistic: no
+pred_general: yes
+pred_extrapolation: no
+pred_inspect: no
+post_processing: no
+gui: yes
+metadata: no
+manuscript_citation: "Patten N, Gaynor M, Soltis D, Soltis P (2024). Geographic And Taxonomic Occurrence R-based Scrubbing (gatoRs): An R package and workflow for processing biodiversity data. Applications in Plant Sciences, 12(2), e11575"
+manuscript_doi: "10.1002/aps3.11575"

From a5a8a3d8aba3fdf3433a3588eaca1cc9ebd0d6fb Mon Sep 17 00:00:00 2001
From: mgaynor1 <shellygaynor@Shellys-MacBook-Pro.local>
Date: Thu, 5 Dec 2024 12:09:06 -0500
Subject: [PATCH 2/3] corrected based on @hannahlowens comments

---
 inst/extdata/packages/gatoRs.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/inst/extdata/packages/gatoRs.yaml b/inst/extdata/packages/gatoRs.yaml
index 1bd5088..8a99168 100644
--- a/inst/extdata/packages/gatoRs.yaml
+++ b/inst/extdata/packages/gatoRs.yaml
@@ -18,15 +18,15 @@ data_partitioning: no
 mod_fit: no
 mod_tuning: no
 mod_ensemble: no
-mod_stack: yes
+mod_stack: no
 mod_evaluate: no
 mod_multispecies: no
 mod_mechanistic: no
-pred_general: yes
+pred_general: no
 pred_extrapolation: no
 pred_inspect: no
 post_processing: no
 gui: yes
-metadata: no
+metadata: yes
 manuscript_citation: "Patten N, Gaynor M, Soltis D, Soltis P (2024). Geographic And Taxonomic Occurrence R-based Scrubbing (gatoRs): An R package and workflow for processing biodiversity data. Applications in Plant Sciences, 12(2), e11575"
 manuscript_doi: "10.1002/aps3.11575"

From 37f49987696388ccf7b58f3f6b9456976a55981b Mon Sep 17 00:00:00 2001
From: mgaynor1 <shellygaynor@Shellys-MBP.attlocal.net>
Date: Fri, 6 Dec 2024 15:48:19 -0500
Subject: [PATCH 3/3] Since GUI indicates a shiny app, this was corrected to
 no.

---
 inst/extdata/packages/gatoRs.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/inst/extdata/packages/gatoRs.yaml b/inst/extdata/packages/gatoRs.yaml
index 8a99168..79cdb96 100644
--- a/inst/extdata/packages/gatoRs.yaml
+++ b/inst/extdata/packages/gatoRs.yaml
@@ -26,7 +26,7 @@ pred_general: no
 pred_extrapolation: no
 pred_inspect: no
 post_processing: no
-gui: yes
+gui: no
 metadata: yes
 manuscript_citation: "Patten N, Gaynor M, Soltis D, Soltis P (2024). Geographic And Taxonomic Occurrence R-based Scrubbing (gatoRs): An R package and workflow for processing biodiversity data. Applications in Plant Sciences, 12(2), e11575"
 manuscript_doi: "10.1002/aps3.11575"