.gitignore

# git will ignore these files

# Compiled source #
###################
*.com
*.class
*.dll
*.exe
*.o
*.so
 
# Packages #
############
# it's better to unpack these files and commit the raw source
# git has its own built in compression methods
*.7z
*.dmg
*.gz
*.iso
*.jar
*.rar
*.tar
*.zip
 
# Logs and databases #
######################
*.log
*.sql
*.sqlite
 
# OS generated files #
######################
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db
_gsdata_/*

# UPGRADE STUDY #
#################
# We want to exclude *input* and *output* images (i.e. tiles, NDPI, TIFs); 
# these are 1) personal data, and 2) too large.
upgrade_study/_temp/*
upgrade_study/CD14/*/*.ndpi
upgrade_study/CD14/*/*.TIF
upgrade_study/CD3/*/*.ndpi
upgrade_study/CD3/*/*.TIF
upgrade_study/CD34/*/*.ndpi
upgrade_study/CD34/*/*.TIF
upgrade_study/CD66b/*/*.ndpi
upgrade_study/CD66b/*/*.TIF
upgrade_study/CD68/*/*.ndpi
upgrade_study/CD68/*/*.TIF
upgrade_study/EVG/*/*.ndpi
upgrade_study/EVG/*/*.TIF
upgrade_study/FIBRIN/*/*.ndpi
upgrade_study/FIBRIN/*/*.TIF
upgrade_study/GLYCC/*/*.ndpi
upgrade_study/GLYCC/*/*.TIF
upgrade_study/GLYCC/AE1468.GLYCC/*
upgrade_study/HE/*/*.ndpi
upgrade_study/HE/*/*.TIF
upgrade_study/HE/AE3910.UMC.HE/*
upgrade_study/SMA/*/*.ndpi
upgrade_study/SMA/*/*.TIF
upgrade_study/SMA/AE4780.SMA/*
upgrade_study/SR/*/*.ndpi
upgrade_study/SR/*/*.TIF

# SLIDES FOLDER #
#################
# We want to exclude some AE-SLIDES images
AE-SLIDES/**